Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_287

Experiment: nitrogen source nitrate 20mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_286 and Pf6N2E2_287 are separated by 59 nucleotides Pf6N2E2_286 - tRNA-specific 2-thiouridylase MnmA, at 352,495 to 353,619 _286 Pf6N2E2_287 - Nudix-like NDP and NTP phosphohydrolase YmfB, at 353,679 to 354,125 _287 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 353.728 kb on + strand, within Pf6N2E2_287at 353.728 kb on + strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.729 kb on - strand, within Pf6N2E2_287at 353.836 kb on + strand, within Pf6N2E2_287at 353.837 kb on - strand, within Pf6N2E2_287at 353.837 kb on - strand, within Pf6N2E2_287at 353.884 kb on + strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.885 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.912 kb on - strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.917 kb on + strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.918 kb on - strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.919 kb on + strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 353.920 kb on - strand, within Pf6N2E2_287at 354.136 kb on - strandat 354.136 kb on - strandat 354.184 kb on + strandat 354.185 kb on - strandat 354.206 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.306 kb on - strandat 354.314 kb on + strandat 354.315 kb on - strandat 354.315 kb on - strandat 354.357 kb on - strandat 354.383 kb on - strandat 354.423 kb on + strandat 354.496 kb on + strandat 354.617 kb on - strandat 354.649 kb on - strandat 354.692 kb on - strandat 354.712 kb on - strandat 354.715 kb on - strandat 354.715 kb on - strandat 354.784 kb on - strandat 354.814 kb on + strandat 354.903 kb on - strandat 354.907 kb on - strandat 354.941 kb on + strandat 354.941 kb on + strandat 354.989 kb on + strandat 354.995 kb on + strandat 354.995 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
remove
353,728 + Pf6N2E2_287 0.11 -0.4
353,728 + Pf6N2E2_287 0.11 -2.7
353,729 - Pf6N2E2_287 0.11 -0.1
353,729 - Pf6N2E2_287 0.11 +1.9
353,729 - Pf6N2E2_287 0.11 -0.1
353,836 + Pf6N2E2_287 0.35 -0.1
353,837 - Pf6N2E2_287 0.35 +0.9
353,837 - Pf6N2E2_287 0.35 -0.4
353,884 + Pf6N2E2_287 0.46 -0.1
353,885 - Pf6N2E2_287 0.46 -0.6
353,885 - Pf6N2E2_287 0.46 -1.9
353,885 - Pf6N2E2_287 0.46 -0.5
353,885 - Pf6N2E2_287 0.46 -0.9
353,912 - Pf6N2E2_287 0.52 -0.1
353,912 - Pf6N2E2_287 0.52 +1.9
353,912 - Pf6N2E2_287 0.52 -0.0
353,917 + Pf6N2E2_287 0.53 +1.9
353,917 + Pf6N2E2_287 0.53 +1.9
353,917 + Pf6N2E2_287 0.53 +0.3
353,917 + Pf6N2E2_287 0.53 -1.1
353,917 + Pf6N2E2_287 0.53 +0.3
353,917 + Pf6N2E2_287 0.53 -0.8
353,917 + Pf6N2E2_287 0.53 +1.9
353,917 + Pf6N2E2_287 0.53 +0.3
353,917 + Pf6N2E2_287 0.53 -0.4
353,917 + Pf6N2E2_287 0.53 -0.2
353,917 + Pf6N2E2_287 0.53 -0.8
353,917 + Pf6N2E2_287 0.53 -0.3
353,917 + Pf6N2E2_287 0.53 +0.5
353,917 + Pf6N2E2_287 0.53 -0.2
353,917 + Pf6N2E2_287 0.53 -0.0
353,917 + Pf6N2E2_287 0.53 +0.9
353,917 + Pf6N2E2_287 0.53 -1.5
353,917 + Pf6N2E2_287 0.53 -0.4
353,917 + Pf6N2E2_287 0.53 -0.7
353,917 + Pf6N2E2_287 0.53 -2.0
353,917 + Pf6N2E2_287 0.53 -0.9
353,917 + Pf6N2E2_287 0.53 -1.7
353,917 + Pf6N2E2_287 0.53 +0.3
353,917 + Pf6N2E2_287 0.53 -0.4
353,917 + Pf6N2E2_287 0.53 +2.2
353,917 + Pf6N2E2_287 0.53 +0.1
353,917 + Pf6N2E2_287 0.53 -0.1
353,918 - Pf6N2E2_287 0.53 +1.9
353,918 - Pf6N2E2_287 0.53 +1.9
353,918 - Pf6N2E2_287 0.53 -1.4
353,918 - Pf6N2E2_287 0.53 +1.9
353,918 - Pf6N2E2_287 0.53 +0.2
353,918 - Pf6N2E2_287 0.53 -1.0
353,918 - Pf6N2E2_287 0.53 -0.4
353,918 - Pf6N2E2_287 0.53 -0.4
353,918 - Pf6N2E2_287 0.53 +1.9
353,918 - Pf6N2E2_287 0.53 +0.6
353,918 - Pf6N2E2_287 0.53 -1.4
353,918 - Pf6N2E2_287 0.53 -1.4
353,918 - Pf6N2E2_287 0.53 +1.9
353,919 + Pf6N2E2_287 0.54 +1.9
353,919 + Pf6N2E2_287 0.54 -0.3
353,919 + Pf6N2E2_287 0.54 +0.3
353,919 + Pf6N2E2_287 0.54 -0.1
353,919 + Pf6N2E2_287 0.54 -1.4
353,919 + Pf6N2E2_287 0.54 -0.0
353,919 + Pf6N2E2_287 0.54 +1.9
353,919 + Pf6N2E2_287 0.54 -0.7
353,919 + Pf6N2E2_287 0.54 -0.3
353,919 + Pf6N2E2_287 0.54 +0.9
353,920 - Pf6N2E2_287 0.54 -2.7
353,920 - Pf6N2E2_287 0.54 -0.4
353,920 - Pf6N2E2_287 0.54 +0.3
353,920 - Pf6N2E2_287 0.54 +1.9
354,136 - -0.9
354,136 - -1.7
354,184 + +4.1
354,185 - +0.4
354,206 - -0.2
354,281 - +0.9
354,281 - -0.9
354,281 - +0.5
354,281 - +0.1
354,306 - -0.0
354,314 + +1.9
354,315 - +1.1
354,315 - +4.0
354,357 - -0.1
354,383 - +0.5
354,423 + -1.9
354,496 + -1.1
354,617 - +0.7
354,649 - +0.3
354,692 - -1.9
354,712 - +0.3
354,715 - +0.5
354,715 - +1.1
354,784 - +1.9
354,814 + +1.9
354,903 - +1.9
354,907 - -0.7
354,941 + +0.5
354,941 + +0.8
354,989 + +0.3
354,995 + +0.9
354,995 + -0.3

Or see this region's nucleotide sequence