Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12820

Experiment: 4-Acetoxy-3-methoxycinnamic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Acetoxy-3-methoxycinnamic 2 mM (C)
2,889,774	-		PFLU_RS12815	0.46	+0.2
2,889,917	+		PFLU_RS12815	0.58	+3.8
2,889,917	+		PFLU_RS12815	0.58	+0.2
2,889,918	-		PFLU_RS12815	0.58	-1.7
2,889,918	-		PFLU_RS12815	0.58	-1.1
2,889,992	+		PFLU_RS12815	0.64	+2.4
2,889,992	+		PFLU_RS12815	0.64	-3.9
2,889,992	+		PFLU_RS12815	0.64	-0.1
2,889,992	+		PFLU_RS12815	0.64	+2.0
2,889,992	+		PFLU_RS12815	0.64	-0.4
2,889,992	+		PFLU_RS12815	0.64	+2.6
2,889,992	+		PFLU_RS12815	0.64	+2.3
2,889,992	+		PFLU_RS12815	0.64	+0.2
2,889,992	+		PFLU_RS12815	0.64	-0.4
2,889,992	+		PFLU_RS12815	0.64	+1.4
2,889,993	-		PFLU_RS12815	0.64	+0.7
2,889,993	-		PFLU_RS12815	0.64	+0.4
2,889,993	-		PFLU_RS12815	0.64	+2.4
2,890,016	+		PFLU_RS12815	0.66	+2.5
2,890,016	+		PFLU_RS12815	0.66	+0.6
2,890,016	+		PFLU_RS12815	0.66	-1.7
2,890,016	+		PFLU_RS12815	0.66	+1.6
2,890,017	-		PFLU_RS12815	0.66	-0.6
2,890,017	-		PFLU_RS12815	0.66	+1.6
2,890,017	-		PFLU_RS12815	0.66	+0.4
2,890,193	+		PFLU_RS12815	0.81	-1.1
2,890,193	+		PFLU_RS12815	0.81	+0.9
2,890,194	-		PFLU_RS12815	0.81	-1.9
2,890,411	+				+0.6
2,890,411	+				+0.6
2,890,411	+				+2.7
2,890,411	+				-0.9
2,890,411	+				-2.9
2,890,411	+				+0.9
2,890,411	+				+3.7
2,890,411	+				+0.1
2,890,412	-				+1.2
2,890,412	-				-1.5
2,890,468	+				-2.1
2,890,468	+				+1.3
2,890,469	-				-0.3
2,890,540	+				+2.8
2,890,541	-				+2.9
2,890,541	-				-1.6
2,890,541	-				-0.9
2,890,541	-				+1.4
2,890,541	-				+0.4
2,890,655	+		PFLU_RS12820	0.13	-2.9
2,890,655	+		PFLU_RS12820	0.13	+0.4
2,890,655	+		PFLU_RS12820	0.13	+1.8
2,890,656	-		PFLU_RS12820	0.13	+1.4
2,890,656	-		PFLU_RS12820	0.13	+0.1
2,890,656	-		PFLU_RS12820	0.13	+0.8
2,890,694	+		PFLU_RS12820	0.17	-1.4
2,890,695	-		PFLU_RS12820	0.17	-2.1
2,890,808	+		PFLU_RS12820	0.29	+0.8
2,890,808	+		PFLU_RS12820	0.29	-1.6
2,890,809	-		PFLU_RS12820	0.29	+0.5
2,890,809	-		PFLU_RS12820	0.29	-0.6
2,890,809	-		PFLU_RS12820	0.29	-1.6
2,890,872	+		PFLU_RS12820	0.36	+0.3
2,890,928	+		PFLU_RS12820	0.43	-1.1
2,890,929	-		PFLU_RS12820	0.43	-1.6
2,890,940	+		PFLU_RS12820	0.44	+0.4
2,890,940	+		PFLU_RS12820	0.44	+1.6
2,890,941	-		PFLU_RS12820	0.44	+2.3
2,890,941	-		PFLU_RS12820	0.44	+2.1
2,890,941	-		PFLU_RS12820	0.44	-1.0
2,891,007	+		PFLU_RS12820	0.51	+0.6
2,891,007	+		PFLU_RS12820	0.51	-0.6
2,891,007	+		PFLU_RS12820	0.51	-1.5
2,891,007	+		PFLU_RS12820	0.51	-1.1
2,891,007	+		PFLU_RS12820	0.51	-0.1
2,891,007	+		PFLU_RS12820	0.51	-2.5
2,891,008	-		PFLU_RS12820	0.51	-0.9
2,891,008	-		PFLU_RS12820	0.51	-2.0
2,891,008	-		PFLU_RS12820	0.51	+0.1
2,891,008	-		PFLU_RS12820	0.51	+2.4
2,891,008	-		PFLU_RS12820	0.51	-2.1
2,891,052	-		PFLU_RS12820	0.56	-0.6
2,891,165	+		PFLU_RS12820	0.69	+2.4
2,891,305	+		PFLU_RS12820	0.84	-2.0
2,891,306	-		PFLU_RS12820	0.84	+0.1
2,891,739	+		PFLU_RS12825	0.61	+0.6
2,891,739	+		PFLU_RS12825	0.61	-1.6
2,891,740	-		PFLU_RS12825	0.62	+1.4
2,891,740	-		PFLU_RS12825	0.62	-0.5
2,891,740	-		PFLU_RS12825	0.62	-1.1
2,891,740	-		PFLU_RS12825	0.62	-2.3
2,891,740	-		PFLU_RS12825	0.62	+1.7
2,891,824	+				-1.4
2,891,824	+				-2.6
2,891,824	+				+0.8
2,891,825	-				-2.4
2,891,853	+				+0.5
2,891,878	+				+0.9
2,892,198	+		PFLU_RS12830	0.12	-0.9
2,892,198	+		PFLU_RS12830	0.12	+0.9
2,892,198	+		PFLU_RS12830	0.12	+0.4
2,892,199	-		PFLU_RS12830	0.12	-2.5
2,892,199	-		PFLU_RS12830	0.12	+1.7
2,892,199	-		PFLU_RS12830	0.12	+1.6
2,892,315	-		PFLU_RS12830	0.17	-1.6
2,892,315	-		PFLU_RS12830	0.17	-0.3
2,892,315	-		PFLU_RS12830	0.17	+0.2
2,892,334	+		PFLU_RS12830	0.18	-2.4
2,892,334	+		PFLU_RS12830	0.18	+1.4
2,892,334	+		PFLU_RS12830	0.18	-3.1
2,892,335	-		PFLU_RS12830	0.18	+0.6
2,892,409	+		PFLU_RS12830	0.21	-0.4