Experiment: 4-Acetoxy-3-methoxycinnamic 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04270 and PFLU_RS04275 are separated by 107 nucleotides PFLU_RS04275 and PFLU_RS04280 overlap by 4 nucleotides PFLU_RS04280 and PFLU_RS04285 are separated by 58 nucleotides PFLU_RS04285 and PFLU_RS04290 are separated by 172 nucleotides
PFLU_RS04270: PFLU_RS04270 - AEC family transporter, at 965,631 to 966,572
_RS04270
PFLU_RS04275: PFLU_RS04275 - 4-carboxymuconolactone decarboxylase, at 966,680 to 967,063
_RS04275
PFLU_RS04280: PFLU_RS04280 - calcium/sodium antiporter, at 967,060 to 968,106
_RS04280
PFLU_RS04285: PFLU_RS04285 - septal ring lytic transglycosylase RlpA family protein, at 968,165 to 968,536
_RS04285
PFLU_RS04290: PFLU_RS04290 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 968,709 to 970,154
_RS04290
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 966.081 kb on + strand, within PFLU_RS04270 at 966.082 kb on - strand, within PFLU_RS04270 at 966.082 kb on - strand, within PFLU_RS04270 at 966.177 kb on + strand, within PFLU_RS04270 at 966.178 kb on - strand, within PFLU_RS04270 at 966.223 kb on - strand, within PFLU_RS04270 at 966.414 kb on + strand, within PFLU_RS04270 at 966.414 kb on + strand, within PFLU_RS04270 at 966.415 kb on - strand, within PFLU_RS04270 at 966.415 kb on - strand, within PFLU_RS04270 at 966.494 kb on + strand at 966.670 kb on + strand at 966.670 kb on + strand at 966.670 kb on + strand at 966.699 kb on + strand at 966.699 kb on + strand at 966.700 kb on - strand at 966.700 kb on - strand at 966.700 kb on - strand at 966.759 kb on + strand, within PFLU_RS04275 at 966.759 kb on + strand, within PFLU_RS04275 at 966.759 kb on + strand, within PFLU_RS04275 at 966.759 kb on + strand, within PFLU_RS04275 at 966.759 kb on + strand, within PFLU_RS04275 at 966.760 kb on - strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.007 kb on + strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.008 kb on - strand, within PFLU_RS04275 at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.142 kb on + strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.143 kb on - strand at 967.145 kb on + strand at 967.145 kb on + strand at 967.145 kb on + strand at 967.145 kb on + strand at 967.145 kb on + strand at 967.145 kb on + strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.146 kb on - strand at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.201 kb on + strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.202 kb on - strand, within PFLU_RS04280 at 967.223 kb on + strand, within PFLU_RS04280 at 967.223 kb on + strand, within PFLU_RS04280 at 967.223 kb on + strand, within PFLU_RS04280 at 967.224 kb on - strand, within PFLU_RS04280 at 967.224 kb on - strand, within PFLU_RS04280 at 967.224 kb on - strand, within PFLU_RS04280 at 967.224 kb on - strand, within PFLU_RS04280 at 967.224 kb on - strand, within PFLU_RS04280 at 967.274 kb on + strand, within PFLU_RS04280 at 967.274 kb on + strand, within PFLU_RS04280 at 967.274 kb on + strand, within PFLU_RS04280 at 967.275 kb on - strand, within PFLU_RS04280 at 967.275 kb on - strand, within PFLU_RS04280 at 967.275 kb on - strand, within PFLU_RS04280 at 967.387 kb on + strand, within PFLU_RS04280 at 967.694 kb on + strand, within PFLU_RS04280 at 967.712 kb on + strand, within PFLU_RS04280 at 967.713 kb on - strand, within PFLU_RS04280 at 967.713 kb on - strand, within PFLU_RS04280 at 967.713 kb on - strand, within PFLU_RS04280 at 967.713 kb on - strand, within PFLU_RS04280 at 967.825 kb on + strand, within PFLU_RS04280 at 967.825 kb on + strand, within PFLU_RS04280 at 967.826 kb on - strand, within PFLU_RS04280 at 967.826 kb on - strand, within PFLU_RS04280 at 967.826 kb on - strand, within PFLU_RS04280 at 967.879 kb on + strand, within PFLU_RS04280 at 967.879 kb on + strand, within PFLU_RS04280 at 967.879 kb on + strand, within PFLU_RS04280 at 967.880 kb on - strand, within PFLU_RS04280 at 967.933 kb on - strand, within PFLU_RS04280 at 968.047 kb on + strand at 968.047 kb on + strand at 968.183 kb on + strand at 968.183 kb on + strand at 968.183 kb on + strand at 968.184 kb on - strand at 968.184 kb on - strand at 968.184 kb on - strand at 968.215 kb on + strand, within PFLU_RS04285 at 968.216 kb on - strand, within PFLU_RS04285 at 968.216 kb on - strand, within PFLU_RS04285 at 968.267 kb on - strand, within PFLU_RS04285 at 968.430 kb on + strand, within PFLU_RS04285 at 968.431 kb on - strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.433 kb on + strand, within PFLU_RS04285 at 968.434 kb on - strand, within PFLU_RS04285 at 968.434 kb on - strand, within PFLU_RS04285 at 968.434 kb on - strand, within PFLU_RS04285 at 968.434 kb on - strand, within PFLU_RS04285 at 968.457 kb on + strand, within PFLU_RS04285 at 968.457 kb on + strand, within PFLU_RS04285 at 968.525 kb on + strand at 968.526 kb on - strand at 968.543 kb on + strand at 968.543 kb on + strand at 968.543 kb on + strand at 968.544 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.572 kb on - strand at 968.604 kb on + strand at 968.604 kb on + strand at 968.604 kb on + strand at 968.604 kb on + strand at 968.604 kb on + strand at 968.604 kb on + strand at 968.605 kb on - strand at 968.605 kb on - strand at 968.605 kb on - strand at 968.605 kb on - strand at 968.605 kb on - strand at 968.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Acetoxy-3-methoxycinnamic 2 mM (C) remove 966,081 + PFLU_RS04270 0.48 -0.1 966,082 - PFLU_RS04270 0.48 -1.6 966,082 - PFLU_RS04270 0.48 -0.8 966,177 + PFLU_RS04270 0.58 -1.6 966,178 - PFLU_RS04270 0.58 -2.6 966,223 - PFLU_RS04270 0.63 +1.5 966,414 + PFLU_RS04270 0.83 -1.3 966,414 + PFLU_RS04270 0.83 -2.2 966,415 - PFLU_RS04270 0.83 -2.4 966,415 - PFLU_RS04270 0.83 -1.0 966,494 + -0.2 966,670 + -2.1 966,670 + +1.2 966,670 + -2.2 966,699 + -0.4 966,699 + -2.6 966,700 - +1.4 966,700 - +1.3 966,700 - -1.4 966,759 + PFLU_RS04275 0.21 +1.5 966,759 + PFLU_RS04275 0.21 -2.0 966,759 + PFLU_RS04275 0.21 -0.8 966,759 + PFLU_RS04275 0.21 -3.6 966,759 + PFLU_RS04275 0.21 -1.7 966,760 - PFLU_RS04275 0.21 +0.8 967,007 + PFLU_RS04275 0.85 +0.4 967,007 + PFLU_RS04275 0.85 +0.6 967,007 + PFLU_RS04275 0.85 +0.9 967,007 + PFLU_RS04275 0.85 +1.1 967,007 + PFLU_RS04275 0.85 +1.9 967,007 + PFLU_RS04275 0.85 -2.7 967,007 + PFLU_RS04275 0.85 +1.4 967,007 + PFLU_RS04275 0.85 -2.4 967,008 - PFLU_RS04275 0.85 -0.6 967,008 - PFLU_RS04275 0.85 -2.4 967,008 - PFLU_RS04275 0.85 -1.3 967,008 - PFLU_RS04275 0.85 -2.5 967,008 - PFLU_RS04275 0.85 +0.8 967,008 - PFLU_RS04275 0.85 +0.4 967,008 - PFLU_RS04275 0.85 +1.8 967,008 - PFLU_RS04275 0.85 -2.1 967,008 - PFLU_RS04275 0.85 +0.0 967,008 - PFLU_RS04275 0.85 +2.8 967,008 - PFLU_RS04275 0.85 +0.0 967,008 - PFLU_RS04275 0.85 -0.6 967,008 - PFLU_RS04275 0.85 +0.4 967,008 - PFLU_RS04275 0.85 -2.2 967,008 - PFLU_RS04275 0.85 -2.1 967,008 - PFLU_RS04275 0.85 +2.1 967,008 - PFLU_RS04275 0.85 +2.0 967,008 - PFLU_RS04275 0.85 -1.7 967,142 + -0.5 967,142 + -0.2 967,142 + +0.7 967,142 + -1.4 967,142 + +0.0 967,142 + +1.0 967,142 + -2.4 967,142 + -1.6 967,143 - -0.6 967,143 - -3.0 967,143 - -1.3 967,143 - +2.8 967,143 - +1.5 967,143 - +0.9 967,143 - +0.0 967,143 - +1.5 967,143 - +1.0 967,143 - -1.9 967,143 - +1.7 967,143 - +2.5 967,143 - +1.6 967,143 - +1.1 967,145 + -1.6 967,145 + +0.4 967,145 + +1.0 967,145 + +2.2 967,145 + -0.3 967,145 + -0.3 967,146 - -0.1 967,146 - +1.2 967,146 - +0.4 967,146 - +0.4 967,146 - -3.3 967,146 - +0.9 967,146 - -3.1 967,201 + PFLU_RS04280 0.13 -1.4 967,201 + PFLU_RS04280 0.13 -0.6 967,201 + PFLU_RS04280 0.13 +2.5 967,201 + PFLU_RS04280 0.13 +3.0 967,201 + PFLU_RS04280 0.13 -2.4 967,201 + PFLU_RS04280 0.13 -2.1 967,201 + PFLU_RS04280 0.13 -1.1 967,201 + PFLU_RS04280 0.13 -0.6 967,201 + PFLU_RS04280 0.13 +1.1 967,201 + PFLU_RS04280 0.13 -1.4 967,201 + PFLU_RS04280 0.13 -2.0 967,201 + PFLU_RS04280 0.13 -0.3 967,201 + PFLU_RS04280 0.13 +2.6 967,201 + PFLU_RS04280 0.13 +2.2 967,201 + PFLU_RS04280 0.13 +0.4 967,201 + PFLU_RS04280 0.13 -0.6 967,201 + PFLU_RS04280 0.13 -0.1 967,201 + PFLU_RS04280 0.13 +3.9 967,201 + PFLU_RS04280 0.13 +0.4 967,201 + PFLU_RS04280 0.13 +2.2 967,202 - PFLU_RS04280 0.14 +1.0 967,202 - PFLU_RS04280 0.14 +1.3 967,202 - PFLU_RS04280 0.14 -0.4 967,202 - PFLU_RS04280 0.14 -0.3 967,202 - PFLU_RS04280 0.14 +1.2 967,202 - PFLU_RS04280 0.14 -1.6 967,202 - PFLU_RS04280 0.14 +2.2 967,202 - PFLU_RS04280 0.14 +2.1 967,202 - PFLU_RS04280 0.14 +1.3 967,202 - PFLU_RS04280 0.14 -1.2 967,202 - PFLU_RS04280 0.14 +1.1 967,202 - PFLU_RS04280 0.14 +0.0 967,202 - PFLU_RS04280 0.14 -1.0 967,202 - PFLU_RS04280 0.14 +1.2 967,202 - PFLU_RS04280 0.14 +0.0 967,202 - PFLU_RS04280 0.14 -0.6 967,223 + PFLU_RS04280 0.16 +2.1 967,223 + PFLU_RS04280 0.16 -3.0 967,223 + PFLU_RS04280 0.16 +1.8 967,224 - PFLU_RS04280 0.16 -2.6 967,224 - PFLU_RS04280 0.16 +2.5 967,224 - PFLU_RS04280 0.16 +2.0 967,224 - PFLU_RS04280 0.16 -2.0 967,224 - PFLU_RS04280 0.16 -1.0 967,274 + PFLU_RS04280 0.20 +1.7 967,274 + PFLU_RS04280 0.20 +1.5 967,274 + PFLU_RS04280 0.20 +2.1 967,275 - PFLU_RS04280 0.21 -0.3 967,275 - PFLU_RS04280 0.21 +0.0 967,275 - PFLU_RS04280 0.21 +0.2 967,387 + PFLU_RS04280 0.31 +1.5 967,694 + PFLU_RS04280 0.61 +0.3 967,712 + PFLU_RS04280 0.62 +0.8 967,713 - PFLU_RS04280 0.62 -0.6 967,713 - PFLU_RS04280 0.62 +0.0 967,713 - PFLU_RS04280 0.62 -1.6 967,713 - PFLU_RS04280 0.62 -0.6 967,825 + PFLU_RS04280 0.73 +1.2 967,825 + PFLU_RS04280 0.73 +1.2 967,826 - PFLU_RS04280 0.73 +1.1 967,826 - PFLU_RS04280 0.73 -0.3 967,826 - PFLU_RS04280 0.73 -0.2 967,879 + PFLU_RS04280 0.78 +1.5 967,879 + PFLU_RS04280 0.78 +0.9 967,879 + PFLU_RS04280 0.78 -1.2 967,880 - PFLU_RS04280 0.78 +0.6 967,933 - PFLU_RS04280 0.83 +2.0 968,047 + +0.7 968,047 + +2.0 968,183 + +1.1 968,183 + -1.4 968,183 + +0.7 968,184 - -1.8 968,184 - +0.5 968,184 - -1.8 968,215 + PFLU_RS04285 0.13 -1.8 968,216 - PFLU_RS04285 0.14 +1.0 968,216 - PFLU_RS04285 0.14 -0.6 968,267 - PFLU_RS04285 0.27 -2.2 968,430 + PFLU_RS04285 0.71 -2.1 968,431 - PFLU_RS04285 0.72 +2.2 968,433 + PFLU_RS04285 0.72 -2.2 968,433 + PFLU_RS04285 0.72 -2.2 968,433 + PFLU_RS04285 0.72 -1.4 968,433 + PFLU_RS04285 0.72 +1.8 968,433 + PFLU_RS04285 0.72 +0.0 968,433 + PFLU_RS04285 0.72 -1.4 968,433 + PFLU_RS04285 0.72 +0.8 968,433 + PFLU_RS04285 0.72 -0.3 968,433 + PFLU_RS04285 0.72 -1.0 968,434 - PFLU_RS04285 0.72 +2.0 968,434 - PFLU_RS04285 0.72 -1.7 968,434 - PFLU_RS04285 0.72 -2.4 968,434 - PFLU_RS04285 0.72 -0.6 968,457 + PFLU_RS04285 0.78 +2.3 968,457 + PFLU_RS04285 0.78 +1.6 968,525 + +1.8 968,526 - -1.9 968,543 + +0.0 968,543 + -0.6 968,543 + +1.7 968,544 - -0.2 968,572 - +2.1 968,572 - +0.4 968,572 - +1.0 968,572 - -0.3 968,572 - +3.0 968,572 - +0.0 968,572 - -2.3 968,604 + -2.3 968,604 + -0.1 968,604 + +3.2 968,604 + +2.0 968,604 + +1.6 968,604 + +1.2 968,605 - +1.0 968,605 - +2.3 968,605 - -1.3 968,605 - +1.0 968,605 - -1.2 968,707 + -0.6
Or see this region's nucleotide sequence