Experiment: nitrogen source Ammonium chloride 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_90 and Pf6N2E2_91 are separated by 141 nucleotides
Pf6N2E2_90 - Lipoprotein, putative, at 135,485 to 136,639
_90
Pf6N2E2_91 - Transcriptional regulator, LysR family, at 136,781 to 137,665
_91
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.583 kb on + strand at 134.583 kb on + strand at 134.583 kb on + strand at 134.584 kb on - strand at 134.587 kb on + strand at 134.587 kb on + strand at 134.588 kb on - strand at 134.588 kb on - strand at 134.620 kb on - strand at 134.679 kb on + strand at 134.679 kb on + strand at 134.680 kb on - strand at 134.680 kb on - strand at 134.695 kb on - strand at 134.727 kb on + strand at 134.775 kb on + strand at 134.775 kb on + strand at 134.775 kb on + strand at 134.776 kb on - strand at 134.776 kb on - strand at 134.776 kb on - strand at 134.908 kb on + strand at 134.908 kb on + strand at 134.957 kb on - strand at 135.009 kb on - strand at 135.020 kb on - strand at 135.020 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.144 kb on - strand at 135.144 kb on - strand at 135.148 kb on - strand at 135.408 kb on - strand at 135.688 kb on - strand, within Pf6N2E2_90 at 135.691 kb on - strand, within Pf6N2E2_90 at 135.725 kb on + strand, within Pf6N2E2_90 at 135.940 kb on - strand, within Pf6N2E2_90 at 136.015 kb on + strand, within Pf6N2E2_90 at 136.264 kb on + strand, within Pf6N2E2_90 at 136.352 kb on + strand, within Pf6N2E2_90 at 136.352 kb on + strand, within Pf6N2E2_90 at 136.369 kb on + strand, within Pf6N2E2_90 at 136.397 kb on + strand, within Pf6N2E2_90 at 136.547 kb on - strand at 136.567 kb on + strand at 136.568 kb on - strand at 136.613 kb on + strand at 136.613 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.680 kb on - strand at 136.680 kb on - strand at 136.865 kb on - strand at 136.865 kb on - strand at 136.866 kb on + strand at 137.163 kb on + strand, within Pf6N2E2_91 at 137.164 kb on - strand, within Pf6N2E2_91 at 137.285 kb on - strand, within Pf6N2E2_91 at 137.448 kb on + strand, within Pf6N2E2_91 at 137.448 kb on + strand, within Pf6N2E2_91 at 137.449 kb on - strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM remove 134,583 + -0.7 134,583 + +0.2 134,583 + -0.4 134,584 - -1.6 134,587 + -0.3 134,587 + +1.3 134,588 - +2.0 134,588 - -0.1 134,620 - -0.3 134,679 + +0.3 134,679 + -0.6 134,680 - -0.3 134,680 - +1.0 134,695 - +0.5 134,727 + +1.0 134,775 + -0.3 134,775 + +0.0 134,775 + +0.1 134,776 - +0.3 134,776 - +2.0 134,776 - +0.1 134,908 + +1.0 134,908 + -0.3 134,957 - -0.8 135,009 - +0.3 135,020 - -0.1 135,020 - +0.8 135,132 - +1.4 135,132 - +1.0 135,132 - -0.3 135,132 - -0.0 135,144 - -0.1 135,144 - +2.0 135,148 - +2.0 135,408 - -1.0 135,688 - Pf6N2E2_90 0.18 -0.7 135,691 - Pf6N2E2_90 0.18 -0.9 135,725 + Pf6N2E2_90 0.21 +2.0 135,940 - Pf6N2E2_90 0.39 -2.9 136,015 + Pf6N2E2_90 0.46 +1.0 136,264 + Pf6N2E2_90 0.67 -1.1 136,352 + Pf6N2E2_90 0.75 -2.9 136,352 + Pf6N2E2_90 0.75 +0.2 136,369 + Pf6N2E2_90 0.77 +0.0 136,397 + Pf6N2E2_90 0.79 +2.0 136,547 - +0.6 136,567 + +0.3 136,568 - -1.2 136,613 + -0.2 136,613 + -1.8 136,679 + +0.1 136,679 + -0.0 136,679 + +0.0 136,679 + +1.0 136,680 - +0.1 136,680 - -1.1 136,865 - -0.1 136,865 - -1.7 136,866 + -2.4 137,163 + Pf6N2E2_91 0.43 -0.9 137,164 - Pf6N2E2_91 0.43 +0.3 137,285 - Pf6N2E2_91 0.57 -0.1 137,448 + Pf6N2E2_91 0.75 -2.1 137,448 + Pf6N2E2_91 0.75 -0.6 137,449 - Pf6N2E2_91 0.75 +2.0 137,454 + Pf6N2E2_91 0.76 -1.2 137,454 + Pf6N2E2_91 0.76 -0.6 137,454 + Pf6N2E2_91 0.76 +0.1 137,454 + Pf6N2E2_91 0.76 +0.3 137,454 + Pf6N2E2_91 0.76 +0.8 137,454 + Pf6N2E2_91 0.76 +0.4 137,454 + Pf6N2E2_91 0.76 +0.8 137,454 + Pf6N2E2_91 0.76 +0.9 137,454 + Pf6N2E2_91 0.76 -1.5 137,455 - Pf6N2E2_91 0.76 +2.0 137,455 - Pf6N2E2_91 0.76 -0.5 137,455 - Pf6N2E2_91 0.76 -0.4 137,455 - Pf6N2E2_91 0.76 +0.2 137,455 - Pf6N2E2_91 0.76 +0.1 137,455 - Pf6N2E2_91 0.76 +0.0 137,455 - Pf6N2E2_91 0.76 +1.7 137,455 - Pf6N2E2_91 0.76 +2.0 137,455 - Pf6N2E2_91 0.76 +1.0
Or see this region's nucleotide sequence