Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4088

Experiment: SJC16_cps8_10MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SJC16_cps8_10MOI
5,333,132	-		BT4087	0.13	+1.0
5,333,136	+		BT4087	0.13	+1.6
5,333,137	-		BT4087	0.13	+0.2
5,333,137	-		BT4087	0.13	-1.4
5,333,211	+		BT4087	0.20	-0.9
5,333,285	-		BT4087	0.27	-3.4
5,333,345	-		BT4087	0.33	-2.2
5,333,353	-		BT4087	0.34	-0.9
5,333,391	-		BT4087	0.38	-2.8
5,333,430	+		BT4087	0.41	-2.3
5,333,443	+		BT4087	0.42	+0.2
5,333,444	-		BT4087	0.43	-0.4
5,333,473	-		BT4087	0.45	+0.6
5,333,473	-		BT4087	0.45	+5.2
5,333,473	-		BT4087	0.45	-0.7
5,333,476	-		BT4087	0.46	+1.3
5,333,485	-		BT4087	0.46	+0.6
5,333,613	-		BT4087	0.59	-0.7
5,333,654	-		BT4087	0.62	-2.4
5,333,693	-		BT4087	0.66	+1.6
5,333,697	-		BT4087	0.67	-1.4
5,333,756	-		BT4087	0.72	+1.8
5,333,760	-		BT4087	0.73	+0.6
5,333,760	-		BT4087	0.73	-0.5
5,333,760	-		BT4087	0.73	-0.6
5,333,766	+		BT4087	0.73	-0.2
5,333,774	-		BT4087	0.74	+0.1
5,333,774	-		BT4087	0.74	-1.4
5,333,792	+		BT4087	0.76	+1.1
5,333,795	-		BT4087	0.76	+1.3
5,333,795	-		BT4087	0.76	+2.9
5,333,923	+		BT4087	0.88	+1.2
5,333,952	-				-0.6
5,333,956	-				-0.7
5,334,000	-				-0.4
5,334,000	-				-1.5
5,334,011	+				-0.0
5,334,046	+				-0.9
5,334,099	+				-1.8
5,334,125	+				-1.1
5,334,192	+				-0.7
5,334,196	-				+0.1
5,334,196	-				+1.2
5,334,218	-				+1.1
5,334,242	+				-0.9
5,334,258	+				-1.8
5,334,292	-				-1.4
5,334,310	-				+0.1
5,334,350	+				-0.7
5,334,350	+				+1.1
5,334,350	+				+0.1
5,334,469	-		BT4088	0.13	+1.2
5,334,469	-		BT4088	0.13	+0.1
5,334,482	+		BT4088	0.13	-3.0
5,334,483	-		BT4088	0.13	-3.4
5,334,504	+		BT4088	0.14	-0.4
5,334,552	-		BT4088	0.15	+0.6
5,334,577	-		BT4088	0.16	+1.0
5,334,601	-		BT4088	0.17	+1.1
5,334,674	-		BT4088	0.19	-0.7
5,334,674	-		BT4088	0.19	+0.2
5,334,681	+		BT4088	0.19	-0.4
5,334,681	+		BT4088	0.19	-1.4
5,334,693	+		BT4088	0.20	-0.2
5,334,701	+		BT4088	0.20	-0.9
5,334,754	+		BT4088	0.22	-1.5
5,334,759	+		BT4088	0.22	-1.5
5,334,774	+		BT4088	0.22	+1.6
5,334,785	+		BT4088	0.23	+0.1
5,334,814	-		BT4088	0.24	+3.5
5,334,851	+		BT4088	0.25	-1.9
5,334,855	+		BT4088	0.25	+1.6
5,334,891	-		BT4088	0.26	+0.1
5,334,965	-		BT4088	0.28	-0.4
5,334,965	-		BT4088	0.28	-2.0
5,335,030	-		BT4088	0.31	-2.4
5,335,057	-		BT4088	0.31	-2.4
5,335,057	-		BT4088	0.31	+1.0
5,335,119	+		BT4088	0.33	-1.5
5,335,120	-		BT4088	0.33	-0.5
5,335,193	+		BT4088	0.36	-0.6
5,335,231	-		BT4088	0.37	+0.2
5,335,246	+		BT4088	0.37	+0.1
5,335,247	-		BT4088	0.37	-0.5
5,335,249	-		BT4088	0.38	-1.7
5,335,275	+		BT4088	0.38	+0.6
5,335,275	+		BT4088	0.38	-1.8
5,335,317	+		BT4088	0.40	-1.5
5,335,318	-		BT4088	0.40	+1.2
5,335,319	+		BT4088	0.40	-0.7
5,335,320	-		BT4088	0.40	-1.4
5,335,357	+		BT4088	0.41	+0.6
5,335,366	-		BT4088	0.41	-1.6
5,335,395	+		BT4088	0.42	-2.2
5,335,402	+		BT4088	0.42	+0.1
5,335,403	-		BT4088	0.42	-1.2
5,335,456	-		BT4088	0.44	-2.1
5,335,474	-		BT4088	0.45	-0.2
5,335,476	+		BT4088	0.45	-1.4
5,335,488	+		BT4088	0.45	-3.6
5,335,491	-		BT4088	0.45	-0.4
5,335,511	+		BT4088	0.46	-0.4
5,335,521	+		BT4088	0.46	+0.6
5,335,573	-		BT4088	0.48	-0.5
5,335,581	+		BT4088	0.48	+0.9
5,335,582	-		BT4088	0.48	-1.2
5,335,644	+		BT4088	0.50	+0.6
5,335,645	-		BT4088	0.50	+0.1
5,335,647	+		BT4088	0.50	-0.7
5,335,648	-		BT4088	0.50	+0.1
5,335,653	+		BT4088	0.50	-1.6
5,335,713	+		BT4088	0.52	-1.2
5,335,742	-		BT4088	0.53	-2.6
5,335,830	+		BT4088	0.56	-1.2
5,335,850	-		BT4088	0.57	-0.4
5,335,866	-		BT4088	0.57	+0.1
5,335,880	-		BT4088	0.58	-1.5
5,335,898	-		BT4088	0.58	-0.9
5,335,910	+		BT4088	0.59	-2.1
5,335,969	+		BT4088	0.60	-0.7
5,336,040	-		BT4088	0.63	+0.1
5,336,071	-		BT4088	0.64	-1.7
5,336,092	+		BT4088	0.64	+0.6
5,336,095	+		BT4088	0.64	-1.9
5,336,113	+		BT4088	0.65	-0.4
5,336,113	+		BT4088	0.65	-0.4
5,336,236	-		BT4088	0.69	-1.5
5,336,287	+		BT4088	0.71	-0.9
5,336,303	-		BT4088	0.71	-1.5
5,336,390	-		BT4088	0.74	-2.9
5,336,410	-		BT4088	0.75	+0.2
5,336,413	+		BT4088	0.75	-2.5
5,336,485	+		BT4088	0.77	-0.4
5,336,485	+		BT4088	0.77	-3.1
5,336,486	-		BT4088	0.77	-1.4
5,336,487	+		BT4088	0.77	+0.1
5,336,595	+		BT4088	0.80	+0.6
5,336,596	-		BT4088	0.80	-0.9
5,336,677	-		BT4088	0.83	-0.2
5,336,697	-		BT4088	0.84	-1.4
5,336,877	+		BT4088	0.89	-1.9
5,336,910	+				+0.6
5,336,947	-				-1.2
5,336,950	+				+0.8
5,336,951	-				-1.1
5,337,001	+				-2.4
5,337,026	+				-0.7
5,337,033	+				-0.4
5,337,034	-				-1.5
5,337,034	-				+1.1
5,337,107	+				-0.2
5,337,161	-				-0.9
5,337,190	-				-0.7
5,337,193	-				-0.4
5,337,211	-				-2.5
5,337,213	+				-2.6
5,337,213	+				-0.4
5,337,213	+				+0.1
5,337,213	+				-0.7
5,337,214	-				-0.1
5,337,222	+				+0.1
5,337,388	-				-2.2
5,337,392	-				-0.8
5,337,437	+		BT4089	0.12	-0.4
5,337,460	-		BT4089	0.14	-0.9
5,337,460	-		BT4089	0.14	-0.5
5,337,462	-		BT4089	0.14	-0.7
5,337,462	-		BT4089	0.14	+1.3
5,337,466	-		BT4089	0.14	+0.3
5,337,468	-		BT4089	0.14	-1.3
5,337,514	-		BT4089	0.17	-0.4
5,337,597	+		BT4089	0.21	+0.7
5,337,598	-		BT4089	0.21	+0.3
5,337,625	+		BT4089	0.23	-0.2
5,337,697	+		BT4089	0.27	+0.1
5,337,725	-		BT4089	0.28	-1.7
5,337,756	-		BT4089	0.30	+1.1
5,337,759	+		BT4089	0.30	+0.1
5,337,762	-		BT4089	0.30	-1.9
5,337,774	+		BT4089	0.31	-1.9
5,337,774	+		BT4089	0.31	-1.4
5,337,817	-		BT4089	0.34	-1.4
5,337,817	-		BT4089	0.34	-0.4
5,337,817	-		BT4089	0.34	+0.3
5,337,817	-		BT4089	0.34	-0.9
5,337,817	-		BT4089	0.34	+0.2
5,337,892	-		BT4089	0.38	-1.3
5,337,892	-		BT4089	0.38	+1.0
5,337,938	+		BT4089	0.40	-2.2
5,337,940	+		BT4089	0.40	+0.3
5,337,941	-		BT4089	0.40	-0.4
5,337,985	-		BT4089	0.43	-0.9
5,338,009	+		BT4089	0.44	-1.8
5,338,080	+		BT4089	0.48	-2.0
5,338,157	-		BT4089	0.52	-1.5
5,338,162	-		BT4089	0.53	-1.7
5,338,162	-		BT4089	0.53	+1.1
5,338,171	-		BT4089	0.53	-1.5
5,338,190	-		BT4089	0.54	-2.3