Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21005

Experiment: Phloretic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phloretic Acid 2 mM (C)
4,719,514	+		PFLU_RS21000	0.59	+0.9
4,719,514	+		PFLU_RS21000	0.59	+1.7
4,719,514	+		PFLU_RS21000	0.59	+0.8
4,719,514	+		PFLU_RS21000	0.59	+2.3
4,719,515	-		PFLU_RS21000	0.59	+1.7
4,719,636	+		PFLU_RS21000	0.68	-3.0
4,719,637	-		PFLU_RS21000	0.69	+1.1
4,719,646	+		PFLU_RS21000	0.69	+0.6
4,719,646	+		PFLU_RS21000	0.69	+1.2
4,719,646	+		PFLU_RS21000	0.69	-1.0
4,719,647	-		PFLU_RS21000	0.69	-0.4
4,719,666	+		PFLU_RS21000	0.71	+1.7
4,719,666	+		PFLU_RS21000	0.71	-0.6
4,719,666	+		PFLU_RS21000	0.71	-1.2
4,719,667	-		PFLU_RS21000	0.71	-2.0
4,719,718	+		PFLU_RS21000	0.75	-0.9
4,719,718	+		PFLU_RS21000	0.75	-0.1
4,719,718	+		PFLU_RS21000	0.75	-1.2
4,719,719	-		PFLU_RS21000	0.75	-0.9
4,719,719	-		PFLU_RS21000	0.75	-1.2
4,719,719	-		PFLU_RS21000	0.75	-0.7
4,719,719	-		PFLU_RS21000	0.75	-1.7
4,719,900	+		PFLU_RS21000	0.89	+1.3
4,719,901	-		PFLU_RS21000	0.90	+0.7
4,719,901	-		PFLU_RS21000	0.90	-0.7
4,719,944	+				+3.7
4,719,949	-				-0.4
4,719,949	-				-1.2
4,719,949	-				-1.7
4,719,972	+				+0.8
4,719,972	+				-0.9
4,719,973	-				-2.3
4,719,987	-				+1.9
4,720,005	+				-1.8
4,720,005	+				-0.4
4,720,006	-				+1.3
4,720,015	-				+1.7
4,720,017	-				+2.8
4,720,017	-				-1.9
4,720,029	+				+5.1
4,720,029	+				-0.7
4,720,030	-				-2.0
4,720,030	-				-2.3
4,720,113	+				-1.8
4,720,113	+				-2.1
4,720,113	+				+0.9
4,720,113	+				+3.5
4,720,113	+				+0.3
4,720,114	-				-1.1
4,720,114	-				-0.9
4,720,114	-				-0.7
4,720,206	+				-1.4
4,720,206	+				+0.9
4,720,219	-				+1.9
4,720,219	-				-0.6
4,720,219	-				-1.8
4,720,243	-				-2.9
4,720,243	-				-2.0
4,720,298	+				+1.1
4,720,318	+				-0.9
4,720,318	+				+0.0
4,720,319	-				+0.7
4,720,322	+				-1.2
4,720,322	+				+0.0
4,720,322	+				-2.2
4,720,322	+				-0.4
4,720,322	+				-0.1
4,720,323	-				-2.5
4,720,323	-				-0.1
4,720,323	-				+0.8
4,720,323	-				-1.2
4,720,323	-				+1.7
4,720,323	-				-0.9
4,720,398	+				-0.4
4,720,445	+				+0.2
4,720,445	+				-2.5
4,720,445	+				+0.0
4,720,446	-				+1.9
4,720,696	+		PFLU_RS21005	0.12	-2.2
4,720,696	+		PFLU_RS21005	0.12	-1.5
4,720,697	-		PFLU_RS21005	0.12	+1.9
4,720,697	-		PFLU_RS21005	0.12	-0.1
4,720,902	+		PFLU_RS21005	0.23	-1.4
4,720,903	-		PFLU_RS21005	0.23	-2.2
4,720,903	-		PFLU_RS21005	0.23	-0.9
4,720,912	+		PFLU_RS21005	0.23	-1.0
4,720,913	-		PFLU_RS21005	0.23	-2.4
4,720,913	-		PFLU_RS21005	0.23	+0.9
4,720,913	-		PFLU_RS21005	0.23	-1.1
4,720,913	-		PFLU_RS21005	0.23	-0.3
4,720,913	-		PFLU_RS21005	0.23	-0.4
4,720,913	-		PFLU_RS21005	0.23	-1.9
4,720,966	+		PFLU_RS21005	0.26	-0.9
4,720,966	+		PFLU_RS21005	0.26	-1.1
4,721,017	-		PFLU_RS21005	0.28	-0.1
4,721,063	-		PFLU_RS21005	0.30	+1.7
4,721,299	+		PFLU_RS21005	0.42	+1.7
4,721,300	-		PFLU_RS21005	0.42	-2.7
4,721,458	+		PFLU_RS21005	0.50	+0.3
4,721,458	+		PFLU_RS21005	0.50	+0.5
4,721,459	-		PFLU_RS21005	0.50	-2.1
4,721,502	+		PFLU_RS21005	0.52	-0.5
4,721,503	-		PFLU_RS21005	0.52	-1.5
4,721,692	+		PFLU_RS21005	0.62	-0.7
4,721,692	+		PFLU_RS21005	0.62	-1.2
4,721,692	+		PFLU_RS21005	0.62	+0.2
4,721,692	+		PFLU_RS21005	0.62	+1.2
4,721,692	+		PFLU_RS21005	0.62	-2.3
4,721,692	+		PFLU_RS21005	0.62	+1.9
4,721,692	+		PFLU_RS21005	0.62	+2.2
4,721,693	-		PFLU_RS21005	0.62	+0.9
4,721,693	-		PFLU_RS21005	0.62	+3.3
4,721,693	-		PFLU_RS21005	0.62	+1.6
4,721,693	-		PFLU_RS21005	0.62	-3.5
4,721,693	-		PFLU_RS21005	0.62	-1.7
4,721,693	-		PFLU_RS21005	0.62	-0.1
4,721,693	-		PFLU_RS21005	0.62	-1.7
4,721,717	-		PFLU_RS21005	0.63	-0.9
4,721,717	-		PFLU_RS21005	0.63	+0.3
4,721,856	+		PFLU_RS21005	0.70	+0.9
4,721,857	-		PFLU_RS21005	0.70	-1.0
4,721,950	+		PFLU_RS21005	0.74	+1.5
4,721,994	+		PFLU_RS21005	0.77	+2.1
4,721,994	+		PFLU_RS21005	0.77	+0.0
4,721,995	-		PFLU_RS21005	0.77	-0.9
4,722,261	+		PFLU_RS21005	0.90	-2.3
4,722,262	-		PFLU_RS21005	0.90	-1.4
4,722,442	-				-0.6
4,722,466	+				+0.9
4,722,602	+				-2.6
4,722,602	+				-0.4
4,722,602	+				-1.0
4,722,602	+				+0.9
4,722,602	+				-2.2
4,722,602	+				-1.6
4,722,602	+				-1.0
4,722,602	+				-2.0
4,722,602	+				+2.2
4,722,602	+				+1.7
4,722,602	+				+2.3
4,722,602	+				-1.4
4,722,602	+				+3.4
4,722,602	+				+1.0
4,722,603	-				+2.9
4,722,603	-				-0.6
4,722,603	-				+3.5
4,722,603	-				+0.4
4,722,603	-				+1.2
4,722,603	-				+1.1
4,722,603	-				+1.3
4,722,603	-				+2.5
4,722,603	-				+1.4
4,722,603	-				+0.9
4,722,603	-				+0.2
4,722,603	-				-1.5
4,722,603	-				+1.0
4,722,604	+				+1.8
4,722,605	-				+0.2
4,722,605	-				-1.9
4,722,611	+		PFLU_RS21010	0.11	+2.3
4,722,731	+		PFLU_RS21010	0.35	-1.6
4,722,731	+		PFLU_RS21010	0.35	+0.6
4,722,744	-		PFLU_RS21010	0.37	+2.0
4,722,766	+		PFLU_RS21010	0.42	-1.2
4,722,766	+		PFLU_RS21010	0.42	-2.2
4,722,766	+		PFLU_RS21010	0.42	+3.2
4,722,767	-		PFLU_RS21010	0.42	-1.4
4,722,767	-		PFLU_RS21010	0.42	+1.1
4,722,770	-		PFLU_RS21010	0.42	-0.0
4,722,866	-		PFLU_RS21010	0.61	+3.4
4,722,929	-		PFLU_RS21010	0.74	+1.8
4,722,929	-		PFLU_RS21010	0.74	-1.6
4,722,959	-		PFLU_RS21010	0.80	+1.8
4,722,959	-		PFLU_RS21010	0.80	-1.4
4,722,959	-		PFLU_RS21010	0.80	-1.6
4,723,092	+				-0.6
4,723,092	+				-0.9
4,723,092	+				+1.6
4,723,093	-				+1.6
4,723,093	-				-0.9
4,723,096	+				+0.9
4,723,116	+				+3.5
4,723,117	-				+2.7
4,723,160	+				-1.2