Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16935

Experiment: Phloretic Acid 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phloretic Acid 2 mM (C)
3,838,123	+		PFLU_RS16930	0.29	+2.5
3,838,123	+		PFLU_RS16930	0.29	-1.4
3,838,123	+		PFLU_RS16930	0.29	+1.7
3,838,123	+		PFLU_RS16930	0.29	+0.2
3,838,123	+		PFLU_RS16930	0.29	-0.7
3,838,123	+		PFLU_RS16930	0.29	+0.6
3,838,124	-		PFLU_RS16930	0.29	+2.7
3,838,124	-		PFLU_RS16930	0.29	+1.6
3,838,156	+		PFLU_RS16930	0.32	+1.7
3,838,157	-		PFLU_RS16930	0.32	+2.3
3,838,189	+		PFLU_RS16930	0.35	-0.6
3,838,189	+		PFLU_RS16930	0.35	-1.7
3,838,190	-		PFLU_RS16930	0.36	+1.9
3,838,190	-		PFLU_RS16930	0.36	+2.6
3,838,190	-		PFLU_RS16930	0.36	+2.3
3,838,243	+		PFLU_RS16930	0.41	-1.6
3,838,243	+		PFLU_RS16930	0.41	+0.4
3,838,244	-		PFLU_RS16930	0.41	+2.0
3,838,244	-		PFLU_RS16930	0.41	+4.8
3,838,244	-		PFLU_RS16930	0.41	-2.5
3,838,244	-		PFLU_RS16930	0.41	+1.0
3,838,402	+		PFLU_RS16930	0.57	-1.7
3,838,403	-		PFLU_RS16930	0.57	+1.4
3,838,513	+		PFLU_RS16930	0.68	+0.2
3,838,513	+		PFLU_RS16930	0.68	+1.4
3,838,513	+		PFLU_RS16930	0.68	-0.3
3,838,514	-		PFLU_RS16930	0.68	+0.4
3,838,514	-		PFLU_RS16930	0.68	-0.1
3,838,514	-		PFLU_RS16930	0.68	+0.4
3,838,514	-		PFLU_RS16930	0.68	-0.9
3,838,534	+		PFLU_RS16930	0.71	+0.2
3,838,534	+		PFLU_RS16930	0.71	-2.8
3,838,534	+		PFLU_RS16930	0.71	-1.7
3,838,534	+		PFLU_RS16930	0.71	+1.6
3,838,534	+		PFLU_RS16930	0.71	-2.6
3,838,534	+		PFLU_RS16930	0.71	-1.7
3,838,534	+		PFLU_RS16930	0.71	-2.6
3,838,534	+		PFLU_RS16930	0.71	-2.5
3,838,535	-		PFLU_RS16930	0.71	+0.4
3,838,535	-		PFLU_RS16930	0.71	-0.1
3,838,535	-		PFLU_RS16930	0.71	+1.4
3,838,535	-		PFLU_RS16930	0.71	+3.3
3,838,535	-		PFLU_RS16930	0.71	-3.0
3,838,535	-		PFLU_RS16930	0.71	+0.6
3,838,535	-		PFLU_RS16930	0.71	-2.6
3,838,535	-		PFLU_RS16930	0.71	-0.6
3,838,535	-		PFLU_RS16930	0.71	-3.0
3,838,535	-		PFLU_RS16930	0.71	-0.9
3,838,535	-		PFLU_RS16930	0.71	+1.9
3,838,535	-		PFLU_RS16930	0.71	-1.7
3,838,839	+				+0.7
3,838,839	+				+1.4
3,838,839	+				-1.1
3,838,840	-				+2.8
3,838,840	-				+1.0
3,838,840	-				-2.1
3,838,840	-				+0.2
3,838,840	-				-1.0
3,838,840	-				+2.4
3,838,840	-				+5.8
3,838,840	-				-2.3
3,838,840	-				-0.1
3,838,880	+				+2.1
3,838,897	+				+3.0
3,838,898	-				-0.4
3,838,902	-				-1.4
3,839,057	+				+0.9
3,839,057	+				+0.7
3,839,057	+				-0.8
3,839,057	+				+2.1
3,839,057	+				+1.2
3,839,058	-				+2.0
3,839,058	-				-3.0
3,839,058	-				+0.4
3,839,058	-				-2.1
3,839,058	-				+0.8
3,839,058	-				+1.4
3,839,058	-				+1.7
3,839,061	-				-1.5
3,839,144	+		PFLU_RS16935	0.12	-1.1
3,839,144	+		PFLU_RS16935	0.12	-1.0
3,839,253	+		PFLU_RS16935	0.26	-1.7
3,839,253	+		PFLU_RS16935	0.26	-1.4
3,839,254	-		PFLU_RS16935	0.26	-1.1
3,839,401	+		PFLU_RS16935	0.44	-2.1
3,839,402	-		PFLU_RS16935	0.44	+0.5
3,839,402	-		PFLU_RS16935	0.44	-0.4
3,839,871	+				+1.5
3,839,871	+				+0.4
3,839,871	+				-2.0
3,839,872	-				+0.3
3,839,872	-				+1.6
3,839,874	+				+2.2
3,839,874	+				-0.6
3,839,875	-				-2.0
3,839,875	-				-0.6
3,839,880	+				+0.1
3,839,880	+				-0.9
3,839,880	+				+1.8
3,839,881	-				-0.1
3,839,888	+				-2.8
3,839,889	-				-2.8
3,839,889	-				-0.6
3,839,889	-				+1.1
3,839,889	-				-1.7
3,839,889	-				-1.7
3,839,893	-				+0.6
3,839,893	-				-0.7
3,840,114	+		PFLU_RS16940	0.19	+0.3
3,840,114	+		PFLU_RS16940	0.19	-0.6
3,840,115	-		PFLU_RS16940	0.19	-2.3
3,840,372	-		PFLU_RS16940	0.41	-2.3
3,840,377	+		PFLU_RS16940	0.41	-1.4
3,840,377	+		PFLU_RS16940	0.41	-2.6
3,840,377	+		PFLU_RS16940	0.41	+0.6
3,840,378	-		PFLU_RS16940	0.41	-1.6
3,840,378	-		PFLU_RS16940	0.41	-1.6
3,840,378	-		PFLU_RS16940	0.41	+2.0
3,840,378	-		PFLU_RS16940	0.41	+0.4
3,840,434	+		PFLU_RS16940	0.46	-2.6
3,840,434	+		PFLU_RS16940	0.46	+0.4
3,840,435	-		PFLU_RS16940	0.46	-3.1
3,840,435	-		PFLU_RS16940	0.46	+0.4
3,840,435	-		PFLU_RS16940	0.46	+0.1
3,840,437	+		PFLU_RS16940	0.46	-2.6
3,840,437	+		PFLU_RS16940	0.46	-2.5
3,840,437	+		PFLU_RS16940	0.46	-2.5
3,840,437	+		PFLU_RS16940	0.46	-1.4
3,840,437	+		PFLU_RS16940	0.46	+1.4
3,840,437	+		PFLU_RS16940	0.46	-1.7
3,840,437	+		PFLU_RS16940	0.46	+0.3
3,840,438	-		PFLU_RS16940	0.46	+0.7
3,840,438	-		PFLU_RS16940	0.46	-0.6
3,840,438	-		PFLU_RS16940	0.46	-0.5
3,840,438	-		PFLU_RS16940	0.46	-2.7
3,840,546	-		PFLU_RS16940	0.55	-1.6
3,840,551	+		PFLU_RS16940	0.56	-1.1
3,840,551	+		PFLU_RS16940	0.56	-1.7
3,840,551	+		PFLU_RS16940	0.56	-3.5
3,840,551	+		PFLU_RS16940	0.56	-1.1
3,840,551	+		PFLU_RS16940	0.56	-0.7
3,840,551	+		PFLU_RS16940	0.56	-3.7
3,840,551	+		PFLU_RS16940	0.56	+1.0
3,840,551	+		PFLU_RS16940	0.56	-1.1
3,840,551	+		PFLU_RS16940	0.56	-2.0
3,840,551	+		PFLU_RS16940	0.56	-2.1
3,840,551	+		PFLU_RS16940	0.56	-2.7
3,840,551	+		PFLU_RS16940	0.56	-2.6
3,840,551	+		PFLU_RS16940	0.56	-2.0
3,840,551	+		PFLU_RS16940	0.56	+1.4
3,840,552	-		PFLU_RS16940	0.56	+0.6
3,840,552	-		PFLU_RS16940	0.56	-0.6
3,840,552	-		PFLU_RS16940	0.56	+0.5
3,840,552	-		PFLU_RS16940	0.56	-1.0
3,840,552	-		PFLU_RS16940	0.56	+0.9
3,840,552	-		PFLU_RS16940	0.56	-3.4
3,840,552	-		PFLU_RS16940	0.56	+0.2
3,840,552	-		PFLU_RS16940	0.56	+1.4
3,840,552	-		PFLU_RS16940	0.56	-0.9
3,840,552	-		PFLU_RS16940	0.56	+0.2
3,840,552	-		PFLU_RS16940	0.56	-1.7
3,840,552	-		PFLU_RS16940	0.56	-3.5
3,840,552	-		PFLU_RS16940	0.56	-1.9
3,840,552	-		PFLU_RS16940	0.56	-2.6
3,840,662	+		PFLU_RS16940	0.65	-2.6
3,840,662	+		PFLU_RS16940	0.65	-1.1
3,840,662	+		PFLU_RS16940	0.65	-2.4
3,840,663	-		PFLU_RS16940	0.65	+2.1
3,840,681	-		PFLU_RS16940	0.66	-2.4