Experiment: Phloretic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03470 and PFLU_RS03475 overlap by 86 nucleotides PFLU_RS03475 and PFLU_RS03480 overlap by 4 nucleotides
PFLU_RS03470: PFLU_RS03470 - CusA/CzcA family heavy metal efflux RND transporter, at 799,006 to 802,152
_RS03470
PFLU_RS03475: PFLU_RS03475 - heavy metal sensor histidine kinase, at 802,067 to 803,503
_RS03475
PFLU_RS03480: PFLU_RS03480 - heavy metal response regulator transcription factor, at 803,500 to 804,174
_RS03480
Position (kb) 802
803
804 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 801.288 kb on + strand, within PFLU_RS03470 at 801.295 kb on + strand, within PFLU_RS03470 at 801.295 kb on + strand, within PFLU_RS03470 at 801.295 kb on + strand, within PFLU_RS03470 at 801.295 kb on + strand, within PFLU_RS03470 at 801.296 kb on - strand, within PFLU_RS03470 at 801.296 kb on - strand, within PFLU_RS03470 at 801.418 kb on - strand, within PFLU_RS03470 at 801.822 kb on + strand, within PFLU_RS03470 at 801.823 kb on - strand, within PFLU_RS03470 at 802.059 kb on + strand at 802.059 kb on + strand at 802.060 kb on - strand at 802.068 kb on + strand at 802.068 kb on + strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.102 kb on + strand at 802.103 kb on - strand at 802.103 kb on - strand at 802.357 kb on - strand, within PFLU_RS03475 at 802.357 kb on - strand, within PFLU_RS03475 at 802.377 kb on - strand, within PFLU_RS03475 at 802.377 kb on - strand, within PFLU_RS03475 at 802.377 kb on - strand, within PFLU_RS03475 at 802.377 kb on - strand, within PFLU_RS03475 at 802.652 kb on - strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.674 kb on + strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 802.675 kb on - strand, within PFLU_RS03475 at 803.016 kb on + strand, within PFLU_RS03475 at 803.016 kb on + strand, within PFLU_RS03475 at 803.016 kb on + strand, within PFLU_RS03475 at 803.016 kb on + strand, within PFLU_RS03475 at 803.017 kb on - strand, within PFLU_RS03475 at 803.017 kb on - strand, within PFLU_RS03475 at 803.149 kb on - strand, within PFLU_RS03475 at 803.149 kb on - strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.256 kb on + strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.257 kb on - strand, within PFLU_RS03475 at 803.416 kb on - strand at 803.416 kb on - strand at 803.523 kb on - strand at 803.652 kb on + strand, within PFLU_RS03480 at 803.652 kb on + strand, within PFLU_RS03480 at 803.653 kb on - strand, within PFLU_RS03480 at 803.653 kb on - strand, within PFLU_RS03480 at 803.653 kb on - strand, within PFLU_RS03480 at 803.750 kb on + strand, within PFLU_RS03480 at 803.885 kb on + strand, within PFLU_RS03480 at 803.885 kb on + strand, within PFLU_RS03480 at 803.885 kb on + strand, within PFLU_RS03480 at 803.886 kb on - strand, within PFLU_RS03480 at 803.886 kb on - strand, within PFLU_RS03480 at 803.886 kb on - strand, within PFLU_RS03480 at 803.886 kb on - strand, within PFLU_RS03480 at 804.101 kb on + strand, within PFLU_RS03480 at 804.102 kb on - strand, within PFLU_RS03480 at 804.102 kb on - strand, within PFLU_RS03480 at 804.102 kb on - strand, within PFLU_RS03480 at 804.131 kb on + strand at 804.132 kb on - strand at 804.169 kb on - strand at 804.218 kb on + strand at 804.219 kb on - strand at 804.219 kb on - strand at 804.232 kb on - strand at 804.238 kb on + strand at 804.239 kb on - strand at 804.262 kb on - strand at 804.268 kb on - strand at 804.268 kb on - strand at 804.372 kb on + strand at 804.373 kb on - strand at 804.373 kb on - strand at 804.373 kb on - strand at 804.373 kb on - strand at 804.414 kb on + strand at 804.414 kb on + strand at 804.414 kb on + strand at 804.415 kb on - strand at 804.449 kb on - strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.451 kb on + strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.452 kb on - strand at 804.486 kb on + strand at 804.486 kb on + strand at 804.486 kb on + strand at 804.486 kb on + strand at 804.486 kb on + strand at 804.487 kb on - strand at 804.487 kb on - strand at 804.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phloretic Acid 2 mM (C) remove 801,288 + PFLU_RS03470 0.73 -0.9 801,295 + PFLU_RS03470 0.73 -1.8 801,295 + PFLU_RS03470 0.73 +0.5 801,295 + PFLU_RS03470 0.73 +1.2 801,295 + PFLU_RS03470 0.73 -1.9 801,296 - PFLU_RS03470 0.73 -1.3 801,296 - PFLU_RS03470 0.73 +2.9 801,418 - PFLU_RS03470 0.77 +2.6 801,822 + PFLU_RS03470 0.89 +1.1 801,823 - PFLU_RS03470 0.90 +2.5 802,059 + +1.7 802,059 + +2.3 802,060 - -3.2 802,068 + -1.9 802,068 + +0.5 802,069 - +1.1 802,069 - -3.2 802,069 - +0.5 802,102 + +2.4 802,102 + +2.1 802,102 + -1.6 802,102 + +4.7 802,102 + +0.1 802,102 + -0.2 802,102 + -2.1 802,102 + -1.8 802,103 - +0.4 802,103 - -1.2 802,357 - PFLU_RS03475 0.20 -1.9 802,357 - PFLU_RS03475 0.20 -0.9 802,377 - PFLU_RS03475 0.22 -2.7 802,377 - PFLU_RS03475 0.22 +1.0 802,377 - PFLU_RS03475 0.22 +2.6 802,377 - PFLU_RS03475 0.22 +4.8 802,652 - PFLU_RS03475 0.41 +0.6 802,674 + PFLU_RS03475 0.42 -1.9 802,674 + PFLU_RS03475 0.42 +0.8 802,674 + PFLU_RS03475 0.42 +0.9 802,674 + PFLU_RS03475 0.42 -1.9 802,674 + PFLU_RS03475 0.42 -0.5 802,674 + PFLU_RS03475 0.42 -3.1 802,674 + PFLU_RS03475 0.42 +3.9 802,674 + PFLU_RS03475 0.42 +0.1 802,674 + PFLU_RS03475 0.42 +0.4 802,675 - PFLU_RS03475 0.42 +2.8 802,675 - PFLU_RS03475 0.42 +0.3 802,675 - PFLU_RS03475 0.42 +0.2 802,675 - PFLU_RS03475 0.42 +0.9 802,675 - PFLU_RS03475 0.42 -1.5 802,675 - PFLU_RS03475 0.42 -0.1 802,675 - PFLU_RS03475 0.42 +1.8 802,675 - PFLU_RS03475 0.42 +1.3 802,675 - PFLU_RS03475 0.42 -2.0 802,675 - PFLU_RS03475 0.42 +2.0 802,675 - PFLU_RS03475 0.42 -0.9 802,675 - PFLU_RS03475 0.42 +1.5 802,675 - PFLU_RS03475 0.42 -1.9 803,016 + PFLU_RS03475 0.66 +2.0 803,016 + PFLU_RS03475 0.66 +0.8 803,016 + PFLU_RS03475 0.66 +0.5 803,016 + PFLU_RS03475 0.66 -2.5 803,017 - PFLU_RS03475 0.66 +0.0 803,017 - PFLU_RS03475 0.66 +2.5 803,149 - PFLU_RS03475 0.75 -1.2 803,149 - PFLU_RS03475 0.75 +1.6 803,256 + PFLU_RS03475 0.83 -0.9 803,256 + PFLU_RS03475 0.83 +2.0 803,256 + PFLU_RS03475 0.83 -2.8 803,256 + PFLU_RS03475 0.83 -1.8 803,256 + PFLU_RS03475 0.83 -1.6 803,256 + PFLU_RS03475 0.83 -1.5 803,256 + PFLU_RS03475 0.83 +2.8 803,256 + PFLU_RS03475 0.83 +1.9 803,257 - PFLU_RS03475 0.83 +2.1 803,257 - PFLU_RS03475 0.83 +0.7 803,257 - PFLU_RS03475 0.83 -0.5 803,257 - PFLU_RS03475 0.83 +1.6 803,257 - PFLU_RS03475 0.83 -1.2 803,257 - PFLU_RS03475 0.83 -0.1 803,257 - PFLU_RS03475 0.83 +0.9 803,257 - PFLU_RS03475 0.83 -1.9 803,257 - PFLU_RS03475 0.83 +2.0 803,257 - PFLU_RS03475 0.83 +1.9 803,416 - -1.3 803,416 - -1.9 803,523 - +1.5 803,652 + PFLU_RS03480 0.23 +0.9 803,652 + PFLU_RS03480 0.23 -0.5 803,653 - PFLU_RS03480 0.23 -1.2 803,653 - PFLU_RS03480 0.23 -1.7 803,653 - PFLU_RS03480 0.23 -0.5 803,750 + PFLU_RS03480 0.37 +1.9 803,885 + PFLU_RS03480 0.57 -2.1 803,885 + PFLU_RS03480 0.57 -2.0 803,885 + PFLU_RS03480 0.57 -0.6 803,886 - PFLU_RS03480 0.57 -1.7 803,886 - PFLU_RS03480 0.57 -1.4 803,886 - PFLU_RS03480 0.57 +1.1 803,886 - PFLU_RS03480 0.57 -1.2 804,101 + PFLU_RS03480 0.89 +1.2 804,102 - PFLU_RS03480 0.89 +1.5 804,102 - PFLU_RS03480 0.89 +0.8 804,102 - PFLU_RS03480 0.89 +1.6 804,131 + +1.6 804,132 - +0.9 804,169 - -0.1 804,218 + -0.9 804,219 - +4.2 804,219 - +0.5 804,232 - +2.3 804,238 + -1.3 804,239 - +0.9 804,262 - -1.3 804,268 - -0.1 804,268 - +1.6 804,372 + +2.4 804,373 - +0.5 804,373 - +2.1 804,373 - +3.3 804,373 - +0.7 804,414 + +1.7 804,414 + +1.9 804,414 + -0.5 804,415 - -1.5 804,449 - +1.0 804,451 + -0.1 804,451 + +0.5 804,451 + +2.1 804,451 + +1.1 804,451 + -2.1 804,451 + -1.0 804,452 - -0.7 804,452 - -0.4 804,452 - -1.1 804,452 - +1.8 804,452 - -1.3 804,452 - +3.0 804,486 + +2.0 804,486 + +0.2 804,486 + +1.0 804,486 + -0.3 804,486 + -0.5 804,487 - +0.3 804,487 - +1.1 804,487 - +2.1
Or see this region's nucleotide sequence