Experiment: Phloretic Acid 2 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02515 and PFLU_RS02520 are separated by 63 nucleotides PFLU_RS02520 and PFLU_RS02525 are separated by 286 nucleotides
PFLU_RS02515: PFLU_RS02515 - flagellar motor protein MotB, at 578,813 to 579,832
_RS02515
PFLU_RS02520: PFLU_RS02520 - hypothetical protein, at 579,896 to 580,291
_RS02520
PFLU_RS02525: PFLU_RS02525 - small ribosomal subunit biogenesis GTPase RsgA, at 580,578 to 581,609
_RS02525
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 578.987 kb on + strand, within PFLU_RS02515 at 578.987 kb on + strand, within PFLU_RS02515 at 578.987 kb on + strand, within PFLU_RS02515 at 578.987 kb on + strand, within PFLU_RS02515 at 578.988 kb on - strand, within PFLU_RS02515 at 578.988 kb on - strand, within PFLU_RS02515 at 579.076 kb on + strand, within PFLU_RS02515 at 579.076 kb on + strand, within PFLU_RS02515 at 579.077 kb on - strand, within PFLU_RS02515 at 579.077 kb on - strand, within PFLU_RS02515 at 579.077 kb on - strand, within PFLU_RS02515 at 579.342 kb on - strand, within PFLU_RS02515 at 579.432 kb on - strand, within PFLU_RS02515 at 579.432 kb on - strand, within PFLU_RS02515 at 579.432 kb on - strand, within PFLU_RS02515 at 579.515 kb on + strand, within PFLU_RS02515 at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.808 kb on + strand at 579.809 kb on - strand at 579.809 kb on - strand at 579.809 kb on - strand at 579.809 kb on - strand at 579.817 kb on + strand at 579.817 kb on + strand at 579.817 kb on + strand at 579.817 kb on + strand at 579.817 kb on + strand at 579.818 kb on - strand at 579.830 kb on + strand at 579.831 kb on - strand at 579.831 kb on - strand at 579.831 kb on - strand at 579.831 kb on - strand at 579.842 kb on + strand at 579.842 kb on + strand at 579.842 kb on + strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.843 kb on - strand at 579.844 kb on + strand at 579.844 kb on + strand at 579.844 kb on + strand at 579.845 kb on - strand at 579.845 kb on - strand at 579.858 kb on + strand at 579.859 kb on - strand at 579.859 kb on - strand at 579.859 kb on - strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.909 kb on + strand at 579.910 kb on - strand at 579.910 kb on - strand at 579.969 kb on + strand, within PFLU_RS02520 at 579.970 kb on - strand, within PFLU_RS02520 at 579.997 kb on + strand, within PFLU_RS02520 at 579.997 kb on + strand, within PFLU_RS02520 at 579.997 kb on + strand, within PFLU_RS02520 at 579.998 kb on - strand, within PFLU_RS02520 at 580.030 kb on + strand, within PFLU_RS02520 at 580.030 kb on + strand, within PFLU_RS02520 at 580.030 kb on + strand, within PFLU_RS02520 at 580.030 kb on + strand, within PFLU_RS02520 at 580.031 kb on - strand, within PFLU_RS02520 at 580.031 kb on - strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.032 kb on + strand, within PFLU_RS02520 at 580.033 kb on - strand, within PFLU_RS02520 at 580.033 kb on - strand, within PFLU_RS02520 at 580.033 kb on - strand, within PFLU_RS02520 at 580.033 kb on - strand, within PFLU_RS02520 at 580.033 kb on - strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.065 kb on + strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.066 kb on - strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.090 kb on + strand, within PFLU_RS02520 at 580.091 kb on - strand, within PFLU_RS02520 at 580.091 kb on - strand, within PFLU_RS02520 at 580.091 kb on - strand, within PFLU_RS02520 at 580.091 kb on - strand, within PFLU_RS02520 at 580.094 kb on + strand, within PFLU_RS02520 at 580.094 kb on + strand, within PFLU_RS02520 at 580.094 kb on + strand, within PFLU_RS02520 at 580.094 kb on + strand, within PFLU_RS02520 at 580.094 kb on + strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.095 kb on - strand, within PFLU_RS02520 at 580.118 kb on + strand, within PFLU_RS02520 at 580.119 kb on - strand, within PFLU_RS02520 at 580.119 kb on - strand, within PFLU_RS02520 at 580.119 kb on - strand, within PFLU_RS02520 at 580.119 kb on - strand, within PFLU_RS02520 at 580.119 kb on - strand, within PFLU_RS02520 at 580.132 kb on + strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.133 kb on - strand, within PFLU_RS02520 at 580.169 kb on - strand, within PFLU_RS02520 at 580.187 kb on + strand, within PFLU_RS02520 at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.256 kb on + strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.257 kb on - strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.279 kb on - strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.281 kb on + strand at 580.282 kb on - strand at 580.282 kb on - strand at 580.282 kb on - strand at 580.282 kb on - strand at 580.296 kb on + strand at 580.297 kb on - strand at 580.436 kb on + strand at 580.436 kb on + strand at 580.436 kb on + strand at 580.436 kb on + strand at 580.436 kb on + strand at 580.437 kb on - strand at 580.437 kb on - strand at 580.437 kb on - strand at 580.437 kb on - strand at 580.437 kb on - strand at 580.437 kb on - strand at 580.520 kb on + strand at 580.533 kb on + strand at 580.534 kb on - strand at 580.534 kb on - strand at 580.534 kb on - strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.555 kb on + strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.556 kb on - strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.557 kb on + strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.558 kb on - strand at 580.583 kb on - strand at 580.622 kb on + strand at 580.622 kb on + strand at 580.622 kb on + strand at 580.623 kb on - strand at 580.623 kb on - strand at 580.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phloretic Acid 2 mM (C) remove 578,987 + PFLU_RS02515 0.17 -0.7 578,987 + PFLU_RS02515 0.17 -1.2 578,987 + PFLU_RS02515 0.17 -0.2 578,987 + PFLU_RS02515 0.17 +0.1 578,988 - PFLU_RS02515 0.17 -1.8 578,988 - PFLU_RS02515 0.17 -1.9 579,076 + PFLU_RS02515 0.26 +0.8 579,076 + PFLU_RS02515 0.26 -1.0 579,077 - PFLU_RS02515 0.26 +0.7 579,077 - PFLU_RS02515 0.26 +0.7 579,077 - PFLU_RS02515 0.26 +0.1 579,342 - PFLU_RS02515 0.52 +0.6 579,432 - PFLU_RS02515 0.61 +2.1 579,432 - PFLU_RS02515 0.61 -1.3 579,432 - PFLU_RS02515 0.61 +4.1 579,515 + PFLU_RS02515 0.69 +2.2 579,808 + +3.1 579,808 + +1.4 579,808 + -0.0 579,808 + -2.5 579,808 + +0.6 579,808 + +0.3 579,808 + +2.5 579,808 + +3.1 579,809 - -1.4 579,809 - +4.3 579,809 - -0.2 579,809 - +0.7 579,817 + -1.4 579,817 + -1.9 579,817 + -0.4 579,817 + +0.0 579,817 + +1.3 579,818 - -2.1 579,830 + -0.1 579,831 - -2.8 579,831 - +1.4 579,831 - -1.4 579,831 - +0.8 579,842 + +0.9 579,842 + +0.4 579,842 + -1.1 579,843 - -0.7 579,843 - +1.2 579,843 - -3.1 579,843 - -1.4 579,843 - +0.1 579,843 - -1.0 579,843 - +3.3 579,843 - -0.2 579,843 - +0.8 579,843 - +0.1 579,843 - +1.4 579,843 - +1.9 579,843 - -1.9 579,844 + +2.4 579,844 + -1.3 579,844 + +0.1 579,845 - +1.1 579,845 - -2.5 579,858 + -1.8 579,859 - +2.5 579,859 - +0.6 579,859 - -0.2 579,909 + -1.8 579,909 + +2.3 579,909 + -0.4 579,909 + -1.3 579,909 + -0.7 579,909 + +3.0 579,909 + +2.0 579,910 - +0.3 579,910 - -2.7 579,969 + PFLU_RS02520 0.18 -0.6 579,970 - PFLU_RS02520 0.19 -2.5 579,997 + PFLU_RS02520 0.26 -1.5 579,997 + PFLU_RS02520 0.26 -0.4 579,997 + PFLU_RS02520 0.26 +0.5 579,998 - PFLU_RS02520 0.26 -1.5 580,030 + PFLU_RS02520 0.34 -1.8 580,030 + PFLU_RS02520 0.34 -1.6 580,030 + PFLU_RS02520 0.34 -1.2 580,030 + PFLU_RS02520 0.34 +1.4 580,031 - PFLU_RS02520 0.34 +2.6 580,031 - PFLU_RS02520 0.34 -1.7 580,032 + PFLU_RS02520 0.34 +1.3 580,032 + PFLU_RS02520 0.34 +1.6 580,032 + PFLU_RS02520 0.34 -0.6 580,032 + PFLU_RS02520 0.34 +0.8 580,032 + PFLU_RS02520 0.34 +1.9 580,032 + PFLU_RS02520 0.34 +2.1 580,032 + PFLU_RS02520 0.34 +0.1 580,032 + PFLU_RS02520 0.34 +1.6 580,032 + PFLU_RS02520 0.34 -0.8 580,033 - PFLU_RS02520 0.35 +1.6 580,033 - PFLU_RS02520 0.35 +0.7 580,033 - PFLU_RS02520 0.35 +0.9 580,033 - PFLU_RS02520 0.35 +2.7 580,033 - PFLU_RS02520 0.35 -1.3 580,065 + PFLU_RS02520 0.43 +0.6 580,065 + PFLU_RS02520 0.43 +0.1 580,065 + PFLU_RS02520 0.43 -1.4 580,065 + PFLU_RS02520 0.43 -0.7 580,065 + PFLU_RS02520 0.43 +1.5 580,065 + PFLU_RS02520 0.43 -2.0 580,065 + PFLU_RS02520 0.43 +2.4 580,066 - PFLU_RS02520 0.43 +0.6 580,066 - PFLU_RS02520 0.43 -0.4 580,066 - PFLU_RS02520 0.43 -2.3 580,066 - PFLU_RS02520 0.43 +1.0 580,066 - PFLU_RS02520 0.43 +2.5 580,066 - PFLU_RS02520 0.43 -1.2 580,066 - PFLU_RS02520 0.43 +0.9 580,066 - PFLU_RS02520 0.43 -1.4 580,090 + PFLU_RS02520 0.49 +1.2 580,090 + PFLU_RS02520 0.49 -2.6 580,090 + PFLU_RS02520 0.49 -2.5 580,090 + PFLU_RS02520 0.49 -1.3 580,090 + PFLU_RS02520 0.49 -0.9 580,090 + PFLU_RS02520 0.49 +0.9 580,090 + PFLU_RS02520 0.49 -0.2 580,091 - PFLU_RS02520 0.49 -2.4 580,091 - PFLU_RS02520 0.49 -1.6 580,091 - PFLU_RS02520 0.49 +0.6 580,091 - PFLU_RS02520 0.49 +1.4 580,094 + PFLU_RS02520 0.50 -0.0 580,094 + PFLU_RS02520 0.50 +1.7 580,094 + PFLU_RS02520 0.50 +1.5 580,094 + PFLU_RS02520 0.50 +1.1 580,094 + PFLU_RS02520 0.50 +0.8 580,095 - PFLU_RS02520 0.50 +0.9 580,095 - PFLU_RS02520 0.50 +4.3 580,095 - PFLU_RS02520 0.50 -1.1 580,095 - PFLU_RS02520 0.50 -2.8 580,095 - PFLU_RS02520 0.50 -1.3 580,095 - PFLU_RS02520 0.50 +3.5 580,095 - PFLU_RS02520 0.50 +0.5 580,095 - PFLU_RS02520 0.50 -1.4 580,095 - PFLU_RS02520 0.50 +3.9 580,118 + PFLU_RS02520 0.56 +1.0 580,119 - PFLU_RS02520 0.56 +2.6 580,119 - PFLU_RS02520 0.56 +1.0 580,119 - PFLU_RS02520 0.56 +1.1 580,119 - PFLU_RS02520 0.56 +1.0 580,119 - PFLU_RS02520 0.56 +0.8 580,132 + PFLU_RS02520 0.60 +2.1 580,133 - PFLU_RS02520 0.60 +1.4 580,133 - PFLU_RS02520 0.60 +2.4 580,133 - PFLU_RS02520 0.60 +1.1 580,133 - PFLU_RS02520 0.60 +3.0 580,133 - PFLU_RS02520 0.60 -0.2 580,133 - PFLU_RS02520 0.60 +1.0 580,169 - PFLU_RS02520 0.69 +2.1 580,187 + PFLU_RS02520 0.73 -1.7 580,256 + +3.3 580,256 + +0.6 580,256 + -1.0 580,256 + -2.0 580,256 + -0.7 580,256 + -2.8 580,256 + +1.1 580,256 + +1.0 580,256 + -3.3 580,256 + +2.8 580,256 + +1.6 580,256 + -1.2 580,256 + -1.8 580,257 - +3.0 580,257 - -1.4 580,257 - -1.3 580,257 - -1.4 580,257 - -0.3 580,257 - -1.9 580,257 - +1.7 580,257 - -2.0 580,257 - -2.0 580,257 - -2.7 580,257 - +0.6 580,257 - +2.6 580,257 - -0.2 580,257 - +0.2 580,257 - +3.1 580,257 - +2.0 580,257 - -0.9 580,257 - +1.6 580,257 - +1.2 580,278 + -1.9 580,278 + -2.6 580,278 + -1.4 580,278 + +1.1 580,278 + +1.4 580,278 + +0.0 580,278 + +2.1 580,278 + -1.0 580,278 + +1.7 580,278 + +1.8 580,278 + -1.3 580,278 + +1.5 580,278 + +0.3 580,278 + -0.2 580,278 + -2.0 580,278 + -2.2 580,278 + +0.8 580,278 + -0.2 580,279 - +2.1 580,279 - +1.6 580,279 - -2.0 580,279 - +2.1 580,279 - +1.7 580,279 - -0.9 580,279 - -1.6 580,279 - -1.8 580,279 - -0.2 580,279 - -2.0 580,279 - -1.3 580,279 - -2.3 580,279 - +1.8 580,279 - -0.1 580,279 - +3.4 580,279 - -2.2 580,279 - -0.3 580,279 - -2.1 580,281 + -0.7 580,281 + +1.9 580,281 + -0.4 580,281 + -0.4 580,281 + -0.3 580,281 + +0.9 580,281 + +1.8 580,281 + +0.0 580,281 + -0.9 580,281 + +0.3 580,282 - -0.4 580,282 - +1.9 580,282 - -1.4 580,282 - +0.6 580,296 + +0.3 580,297 - -2.9 580,436 + +1.8 580,436 + -3.1 580,436 + -1.5 580,436 + +1.1 580,436 + -0.3 580,437 - +1.0 580,437 - -2.4 580,437 - +0.9 580,437 - +0.9 580,437 - +0.6 580,437 - -0.1 580,520 + +1.6 580,533 + +0.6 580,534 - -0.9 580,534 - -2.0 580,534 - -1.0 580,555 + +2.0 580,555 + +2.6 580,555 + -1.8 580,555 + +0.3 580,555 + -1.7 580,555 + -2.1 580,555 + -1.7 580,555 + -1.2 580,555 + +4.3 580,555 + +1.2 580,555 + +0.1 580,555 + -0.4 580,555 + -0.7 580,555 + +1.1 580,555 + +1.2 580,555 + -1.3 580,555 + +1.7 580,555 + -1.6 580,556 - -0.5 580,556 - +0.8 580,556 - +2.7 580,556 - -0.7 580,556 - +0.6 580,556 - +0.7 580,556 - -2.6 580,556 - +1.1 580,556 - -0.4 580,556 - +5.0 580,556 - +1.1 580,556 - +1.1 580,556 - +1.5 580,556 - -1.3 580,556 - -0.7 580,556 - +2.2 580,556 - -1.3 580,557 + +2.0 580,557 + +1.7 580,557 + +1.0 580,557 + +0.6 580,557 + -2.0 580,557 + +3.1 580,557 + +0.2 580,557 + -1.1 580,557 + -2.0 580,557 + -1.0 580,557 + +1.9 580,557 + +1.9 580,557 + +0.9 580,557 + +1.6 580,557 + +0.1 580,557 + +1.1 580,557 + +0.1 580,558 - +0.4 580,558 - -1.2 580,558 - +0.7 580,558 - +3.9 580,558 - -1.2 580,558 - +2.1 580,558 - +1.6 580,558 - -1.2 580,558 - -1.0 580,558 - -1.3 580,558 - +2.8 580,583 - -0.4 580,622 + +2.1 580,622 + +2.1 580,622 + +1.1 580,623 - +2.1 580,623 - -0.4 580,623 - +0.1
Or see this region's nucleotide sequence