Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3957

Experiment: DAC23_cps8_10MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DAC23_cps8_10MOI
5,141,111	+		BT3956	0.51	-0.6
5,141,112	-		BT3956	0.51	-2.0
5,141,278	+		BT3956	0.63	+0.3
5,141,335	+		BT3956	0.67	-2.4
5,141,339	+		BT3956	0.67	-0.2
5,141,393	+		BT3956	0.71	-2.1
5,141,393	+		BT3956	0.71	-2.0
5,141,397	-		BT3956	0.72	-1.7
5,141,398	+		BT3956	0.72	-3.5
5,141,419	-		BT3956	0.73	-0.8
5,141,451	+		BT3956	0.75	+0.3
5,141,451	+		BT3956	0.75	-1.0
5,141,452	-		BT3956	0.76	+0.4
5,141,530	-		BT3956	0.81	-2.8
5,141,564	+		BT3956	0.84	-3.0
5,141,565	-		BT3956	0.84	+0.4
5,141,586	-		BT3956	0.85	-2.0
5,141,586	-		BT3956	0.85	-1.8
5,141,608	-		BT3956	0.87	-0.4
5,141,775	+				-0.6
5,141,776	-				-0.9
5,141,799	+				-1.3
5,141,828	+				-1.8
5,141,844	+				-0.3
5,141,893	+				-0.2
5,141,901	+				-1.3
5,141,962	-				+0.3
5,142,028	-				-1.9
5,142,031	-				-1.1
5,142,032	+				-0.3
5,142,087	+				-2.3
5,142,088	-				-1.2
5,142,094	-				+0.1
5,142,113	+				-1.7
5,142,213	+				-2.6
5,142,271	+				-0.6
5,142,289	+				-1.5
5,142,366	+				+1.0
5,142,381	+				-0.6
5,142,400	-				-2.6
5,142,403	-				-0.0
5,142,403	-				-0.5
5,142,454	+				-1.9
5,142,458	-				-2.2
5,142,475	+				-1.5
5,142,479	-				-1.0
5,142,505	-		BT3957	0.10	+0.2
5,142,512	+		BT3957	0.11	-0.6
5,142,540	+		BT3957	0.11	-0.9
5,142,543	+		BT3957	0.11	-0.6
5,142,544	-		BT3957	0.11	+0.2
5,142,636	-		BT3957	0.14	-0.6
5,142,655	-		BT3957	0.14	+0.3
5,142,655	-		BT3957	0.14	-0.6
5,142,681	-		BT3957	0.15	+1.0
5,142,681	-		BT3957	0.15	-1.7
5,142,681	-		BT3957	0.15	-3.0
5,142,718	-		BT3957	0.16	-3.3
5,142,812	-		BT3957	0.18	-2.8
5,142,816	-		BT3957	0.18	+0.3
5,142,817	+		BT3957	0.18	+0.3
5,142,817	+		BT3957	0.18	-2.3
5,142,907	+		BT3957	0.21	-1.1
5,142,908	-		BT3957	0.21	-2.0
5,142,921	-		BT3957	0.21	-0.2
5,142,921	-		BT3957	0.21	-1.3
5,142,970	+		BT3957	0.22	-1.9
5,142,998	+		BT3957	0.23	+0.4
5,142,998	+		BT3957	0.23	-2.0
5,143,002	+		BT3957	0.23	-1.6
5,143,002	+		BT3957	0.23	+0.4
5,143,002	+		BT3957	0.23	-1.4
5,143,003	-		BT3957	0.23	+1.0
5,143,003	-		BT3957	0.23	-3.3
5,143,005	-		BT3957	0.23	-0.6
5,143,006	+		BT3957	0.23	-0.6
5,143,006	+		BT3957	0.23	-0.8
5,143,006	+		BT3957	0.23	-1.2
5,143,046	+		BT3957	0.24	-0.3
5,143,076	-		BT3957	0.25	-1.0
5,143,081	-		BT3957	0.25	+0.1
5,143,122	-		BT3957	0.26	-0.7
5,143,222	+		BT3957	0.28	-1.2
5,143,248	+		BT3957	0.29	-1.0
5,143,269	-		BT3957	0.30	-0.6
5,143,291	+		BT3957	0.30	-3.0
5,143,292	-		BT3957	0.30	-1.7
5,143,343	-		BT3957	0.32	-0.8
5,143,404	+		BT3957	0.33	-1.6
5,143,429	-		BT3957	0.34	-3.0
5,143,454	+		BT3957	0.34	+0.5
5,143,484	+		BT3957	0.35	-1.4
5,143,485	-		BT3957	0.35	+0.3
5,143,485	-		BT3957	0.35	+0.9
5,143,585	+		BT3957	0.38	-2.5
5,143,602	-		BT3957	0.38	-0.0
5,143,617	+		BT3957	0.39	-0.5
5,143,617	+		BT3957	0.39	+2.7
5,143,617	+		BT3957	0.39	-1.7
5,143,671	-		BT3957	0.40	+0.5
5,143,687	+		BT3957	0.40	-1.1
5,143,702	-		BT3957	0.41	-1.3
5,143,724	+		BT3957	0.41	-2.3
5,143,753	-		BT3957	0.42	+1.0
5,143,776	+		BT3957	0.43	-0.2
5,143,783	+		BT3957	0.43	-0.6
5,143,783	+		BT3957	0.43	-0.3
5,143,784	-		BT3957	0.43	-1.1
5,143,787	+		BT3957	0.43	-0.8
5,143,788	-		BT3957	0.43	+1.0
5,143,821	+		BT3957	0.44	-1.6
5,143,824	+		BT3957	0.44	-0.4
5,143,846	+		BT3957	0.44	-0.4
5,143,847	-		BT3957	0.44	-2.6
5,143,849	-		BT3957	0.44	-2.0
5,143,873	-		BT3957	0.45	-1.6
5,143,879	-		BT3957	0.45	+0.7
5,143,893	-		BT3957	0.45	-1.4
5,143,951	-		BT3957	0.47	-1.3
5,143,979	-		BT3957	0.48	+0.6
5,143,979	-		BT3957	0.48	+0.4
5,143,982	-		BT3957	0.48	-0.0
5,143,982	-		BT3957	0.48	+0.6
5,143,984	+		BT3957	0.48	-1.2
5,144,026	+		BT3957	0.49	-0.3
5,144,027	-		BT3957	0.49	-1.3
5,144,027	-		BT3957	0.49	+0.5
5,144,041	+		BT3957	0.49	+1.0
5,144,119	+		BT3957	0.51	-1.4
5,144,129	+		BT3957	0.51	-0.9
5,144,140	-		BT3957	0.52	-1.6
5,144,140	-		BT3957	0.52	+0.4
5,144,145	-		BT3957	0.52	+0.4
5,144,145	-		BT3957	0.52	+2.2
5,144,157	+		BT3957	0.52	-2.6
5,144,158	-		BT3957	0.52	-0.9
5,144,180	-		BT3957	0.53	+1.3
5,144,182	+		BT3957	0.53	-1.3
5,144,185	-		BT3957	0.53	-3.1
5,144,281	+		BT3957	0.55	-1.3
5,144,281	+		BT3957	0.55	-2.3
5,144,287	+		BT3957	0.55	-1.8
5,144,287	+		BT3957	0.55	-1.0
5,144,287	+		BT3957	0.55	-0.8
5,144,287	+		BT3957	0.55	+2.6
5,144,288	-		BT3957	0.55	-0.6
5,144,290	-		BT3957	0.56	-1.3
5,144,290	-		BT3957	0.56	+1.4
5,144,290	-		BT3957	0.56	+1.6
5,144,331	+		BT3957	0.57	-1.3
5,144,333	+		BT3957	0.57	-0.4
5,144,334	-		BT3957	0.57	+1.7
5,144,347	+		BT3957	0.57	+0.1
5,144,347	+		BT3957	0.57	-1.8
5,144,372	-		BT3957	0.58	-1.7
5,144,372	-		BT3957	0.58	-0.6
5,144,378	+		BT3957	0.58	+0.6
5,144,391	+		BT3957	0.58	-0.8
5,144,392	-		BT3957	0.58	+0.1
5,144,410	-		BT3957	0.59	-0.4
5,144,416	+		BT3957	0.59	-2.2
5,144,417	-		BT3957	0.59	+0.2
5,144,418	+		BT3957	0.59	-0.3
5,144,428	+		BT3957	0.59	-2.0
5,144,428	-		BT3957	0.59	-1.7
5,144,476	+		BT3957	0.60	-1.0
5,144,477	-		BT3957	0.60	-1.8
5,144,477	-		BT3957	0.60	-1.6
5,144,485	+		BT3957	0.60	+1.0
5,144,504	+		BT3957	0.61	-0.4
5,144,617	-		BT3957	0.64	+3.6
5,144,627	+		BT3957	0.64	-1.8
5,144,628	-		BT3957	0.64	-0.1
5,144,710	-		BT3957	0.66	-0.8
5,144,768	+		BT3957	0.68	+0.7
5,144,778	+		BT3957	0.68	-0.9
5,144,779	-		BT3957	0.68	-1.3
5,144,808	+		BT3957	0.69	-0.3
5,144,817	+		BT3957	0.69	+1.0
5,144,817	+		BT3957	0.69	-0.6
5,144,818	-		BT3957	0.69	-1.0
5,144,818	-		BT3957	0.69	+2.0
5,144,839	-		BT3957	0.69	-0.6
5,144,841	-		BT3957	0.70	-0.4
5,144,841	-		BT3957	0.70	-1.3
5,144,852	+		BT3957	0.70	-2.8
5,144,877	+		BT3957	0.70	-1.6
5,144,877	+		BT3957	0.70	-0.7
5,144,880	-		BT3957	0.70	-0.8
5,144,880	-		BT3957	0.70	+0.3
5,144,946	+		BT3957	0.72	-0.1
5,144,946	+		BT3957	0.72	+1.6
5,144,953	+		BT3957	0.72	-0.3
5,144,962	+		BT3957	0.73	-2.2
5,144,970	+		BT3957	0.73	+0.8
5,144,982	-		BT3957	0.73	-1.6
5,145,054	-		BT3957	0.75	-1.8
5,145,054	-		BT3957	0.75	-3.1
5,145,074	+		BT3957	0.75	-2.3
5,145,074	+		BT3957	0.75	-1.6
5,145,076	+		BT3957	0.75	+1.3
5,145,077	-		BT3957	0.75	-1.0
5,145,077	-		BT3957	0.75	-2.7
5,145,078	+		BT3957	0.76	+0.3
5,145,117	+		BT3957	0.76	-2.0
5,145,117	+		BT3957	0.76	-1.0
5,145,120	+		BT3957	0.77	-0.9
5,145,120	+		BT3957	0.77	-0.2
5,145,121	-		BT3957	0.77	-2.3
5,145,140	+		BT3957	0.77	-2.0
5,145,141	-		BT3957	0.77	+0.4
5,145,189	-		BT3957	0.78	+0.4
5,145,406	-		BT3957	0.84	+0.1
5,145,426	-		BT3957	0.84	-0.8
5,145,429	-		BT3957	0.84	-1.3
5,145,435	+		BT3957	0.85	-0.8
5,145,484	-		BT3957	0.86	-0.6
5,145,492	+		BT3957	0.86	-1.5
5,145,527	+		BT3957	0.87	+0.3
5,145,540	-		BT3957	0.87	-1.6
5,145,583	+		BT3957	0.88	-1.1
5,145,583	+		BT3957	0.88	-0.0
5,145,583	+		BT3957	0.88	-0.8
5,145,584	-		BT3957	0.88	-0.0
5,145,584	-		BT3957	0.88	-2.8
5,145,586	-		BT3957	0.88	-3.3
5,145,590	+		BT3957	0.88	-0.9
5,145,599	-		BT3957	0.89	+1.4
5,145,607	-		BT3957	0.89	-1.6
5,145,630	+		BT3957	0.89	-0.0
5,145,640	+		BT3957	0.90	-0.0
5,145,641	-		BT3957	0.90	+2.0
5,145,708	+				-1.0
5,145,851	+				+0.1
5,145,852	-				-0.4
5,145,878	+				-1.8
5,145,976	+				-0.4
5,146,070	-				-2.7
5,146,073	-				+2.0
5,146,083	+				+0.5
5,146,091	+				+0.3
5,146,106	+				-0.9
5,146,146	+				+0.2
5,146,162	+				-1.5
5,146,185	-				-2.1
5,146,207	-				-1.2
5,146,208	+				-2.5
5,146,234	-				-1.6
5,146,341	+				-2.1
5,146,342	-				-0.8
5,146,344	-				-2.2
5,146,370	+				-1.5
5,146,370	+				-0.1
5,146,371	-				-1.0
5,146,378	-				-1.8
5,146,492	-				-2.2
5,146,494	-				-1.8
5,146,496	-				-0.7
5,146,503	+				-0.8
5,146,504	-				+1.0
5,146,515	+				-0.8
5,146,535	+				-3.8
5,146,536	-				-0.2
5,146,560	-				+0.2
5,146,593	+				-1.6
5,146,628	-				+0.8
5,146,652	-				+0.3
5,146,732	-				+0.7
5,146,744	+				-1.7
5,146,752	+				-2.0
5,146,753	-				-0.7
5,146,753	-				-0.0
5,146,768	+				-0.0
5,146,769	-				-1.1
5,146,843	+				-0.1
5,146,858	-				-0.7
5,146,880	-				-0.3
5,146,922	+				-0.0
5,146,922	+				-0.9
5,146,923	-				+1.0
5,146,923	-				-2.3
5,146,926	+				-1.8
5,146,926	+				+1.0
5,146,926	+				+0.3
5,146,927	-				-2.0
5,146,927	-				+1.0
5,146,927	-				-1.0
5,146,953	+				+0.1
5,147,017	-		BT3958	0.11	-0.0
5,147,042	-		BT3958	0.12	+1.0