Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24095

Experiment: L-Alanine 15 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine 15 mM (C)
5,393,423	-		PFLU_RS24085	0.87	-0.8
5,393,463	+				-0.1
5,393,463	+				+0.5
5,393,463	+				+0.5
5,393,463	+				-0.5
5,393,463	+				+1.5
5,393,463	+				+1.5
5,393,559	+				+0.5
5,393,559	+				+1.5
5,393,559	+				+0.5
5,393,560	-				-0.7
5,393,560	-				-1.3
5,393,560	-				+0.5
5,393,560	-				+1.5
5,393,560	-				+0.1
5,393,560	-				+0.2
5,393,560	-				+0.5
5,393,560	-				-0.1
5,393,655	+		PFLU_RS24090	0.16	+0.5
5,393,719	+		PFLU_RS24090	0.26	+0.5
5,393,720	-		PFLU_RS24090	0.26	+1.5
5,393,756	+		PFLU_RS24090	0.32	+0.5
5,393,757	-		PFLU_RS24090	0.33	-0.8
5,393,757	-		PFLU_RS24090	0.33	-0.5
5,393,757	-		PFLU_RS24090	0.33	-0.5
5,393,757	-		PFLU_RS24090	0.33	-0.8
5,393,988	+		PFLU_RS24090	0.70	-0.1
5,393,988	+		PFLU_RS24090	0.70	+0.5
5,393,988	+		PFLU_RS24090	0.70	+0.5
5,393,989	-		PFLU_RS24090	0.70	+1.5
5,393,989	-		PFLU_RS24090	0.70	-0.1
5,393,989	-		PFLU_RS24090	0.70	-0.5
5,394,017	+		PFLU_RS24090	0.75	+0.2
5,394,017	+		PFLU_RS24090	0.75	-0.5
5,394,017	+		PFLU_RS24090	0.75	-0.5
5,394,017	+		PFLU_RS24090	0.75	-0.8
5,394,017	+		PFLU_RS24090	0.75	+0.5
5,394,017	+		PFLU_RS24090	0.75	+0.5
5,394,018	-		PFLU_RS24090	0.75	+0.5
5,394,018	-		PFLU_RS24090	0.75	+0.5
5,394,018	-		PFLU_RS24090	0.75	-0.1
5,394,018	-		PFLU_RS24090	0.75	-1.1
5,394,093	+		PFLU_RS24090	0.87	+1.5
5,394,094	-		PFLU_RS24090	0.88	+1.5
5,394,183	-				-0.6
5,394,183	-				+1.5
5,394,217	+				+1.3
5,394,217	+				-0.2
5,394,217	+				+0.8
5,394,218	-				-0.5
5,394,235	+				+0.7
5,394,235	+				+0.2
5,394,235	+				+1.1
5,394,235	+				+0.6
5,394,236	-				+1.1
5,394,236	-				-0.8
5,394,236	-				-2.2
5,394,236	-				+1.1
5,394,457	+		PFLU_RS24095	0.42	-0.8
5,394,457	+		PFLU_RS24095	0.42	+1.5
5,394,457	+		PFLU_RS24095	0.42	-0.5
5,394,551	+		PFLU_RS24095	0.60	-0.1
5,394,573	-		PFLU_RS24095	0.64	+0.5
5,394,586	+		PFLU_RS24095	0.66	+1.5
5,394,586	+		PFLU_RS24095	0.66	+0.5
5,394,586	+		PFLU_RS24095	0.66	+0.5
5,394,587	-		PFLU_RS24095	0.67	+1.5
5,394,616	+		PFLU_RS24095	0.72	-0.5
5,394,617	-		PFLU_RS24095	0.72	-0.5
5,394,617	-		PFLU_RS24095	0.72	+0.2
5,394,679	+		PFLU_RS24095	0.84	+0.9
5,394,680	-		PFLU_RS24095	0.84	+0.5
5,394,680	-		PFLU_RS24095	0.84	+0.5
5,394,680	-		PFLU_RS24095	0.84	+1.5
5,394,747	+				+0.5
5,394,747	+				-0.5
5,394,748	-				-0.1
5,394,748	-				+1.5
5,394,748	-				+0.5
5,394,748	-				-1.9
5,394,748	-				+0.2
5,394,748	-				+0.5
5,394,753	+				+1.3
5,394,753	+				-0.3
5,394,753	+				-0.5
5,394,761	+				-0.5
5,394,761	+				+0.8
5,394,762	-				+1.3
5,394,788	+				+0.4
5,394,788	+				-0.5
5,394,788	+				+0.6
5,394,788	+				-0.1
5,394,788	+				+0.8
5,394,788	+				-0.9
5,394,788	+				-0.1
5,394,788	+				+0.2
5,394,788	+				+0.1
5,394,789	-				+0.3
5,394,789	-				+0.7
5,394,789	-				+2.5
5,394,789	-				+0.5
5,394,789	-				+0.2
5,394,789	-				+0.2
5,394,789	-				-0.1
5,394,789	-				+0.3
5,394,789	-				-0.2
5,394,789	-				+0.4
5,394,789	-				+1.4
5,394,789	-				+0.3
5,394,789	-				+0.8
5,394,789	-				+1.7
5,394,789	-				-2.4
5,394,846	-				-0.9
5,394,939	+				-0.3
5,394,939	+				+1.5
5,394,939	+				+0.5
5,394,939	+				-0.2
5,394,939	+				-0.1
5,394,939	+				-0.1
5,394,939	+				+0.7
5,394,940	-				-0.2
5,394,940	-				+0.9
5,394,940	-				+1.1
5,394,940	-				+0.7
5,394,940	-				+1.8
5,394,984	+				+0.9
5,394,984	+				-2.1
5,394,984	+				+2.1
5,394,984	+				+0.4
5,394,985	-				-1.6
5,394,985	-				-0.7
5,394,985	-				-0.2
5,395,143	+		PFLU_RS24100	0.27	-0.5
5,395,143	+		PFLU_RS24100	0.27	-0.6
5,395,143	+		PFLU_RS24100	0.27	-0.4
5,395,143	+		PFLU_RS24100	0.27	+0.5
5,395,143	+		PFLU_RS24100	0.27	+0.7
5,395,143	+		PFLU_RS24100	0.27	-0.2
5,395,143	+		PFLU_RS24100	0.27	-0.1
5,395,143	+		PFLU_RS24100	0.27	+1.0
5,395,143	+		PFLU_RS24100	0.27	+2.5
5,395,143	+		PFLU_RS24100	0.27	-1.5
5,395,143	+		PFLU_RS24100	0.27	+0.1
5,395,143	+		PFLU_RS24100	0.27	-0.3
5,395,143	+		PFLU_RS24100	0.27	+2.1
5,395,144	-		PFLU_RS24100	0.28	+0.0
5,395,144	-		PFLU_RS24100	0.28	-1.4
5,395,144	-		PFLU_RS24100	0.28	+1.5
5,395,144	-		PFLU_RS24100	0.28	-0.6
5,395,144	-		PFLU_RS24100	0.28	+1.5
5,395,144	-		PFLU_RS24100	0.28	-0.5
5,395,144	-		PFLU_RS24100	0.28	-0.3
5,395,144	-		PFLU_RS24100	0.28	-1.3
5,395,144	-		PFLU_RS24100	0.28	-2.7
5,395,144	-		PFLU_RS24100	0.28	-1.6
5,395,144	-		PFLU_RS24100	0.28	+2.5
5,395,144	-		PFLU_RS24100	0.28	-0.1
5,395,144	-		PFLU_RS24100	0.28	-0.1
5,395,166	+		PFLU_RS24100	0.31	+1.7
5,395,166	+		PFLU_RS24100	0.31	+0.3
5,395,166	+		PFLU_RS24100	0.31	+1.5
5,395,166	+		PFLU_RS24100	0.31	-0.1
5,395,166	+		PFLU_RS24100	0.31	-1.8
5,395,166	+		PFLU_RS24100	0.31	+0.9
5,395,166	+		PFLU_RS24100	0.31	-0.8
5,395,166	+		PFLU_RS24100	0.31	-0.5
5,395,166	+		PFLU_RS24100	0.31	+0.9
5,395,166	+		PFLU_RS24100	0.31	+0.1
5,395,166	+		PFLU_RS24100	0.31	-0.4
5,395,166	+		PFLU_RS24100	0.31	+0.7
5,395,166	+		PFLU_RS24100	0.31	+1.0
5,395,166	+		PFLU_RS24100	0.31	-0.1
5,395,166	+		PFLU_RS24100	0.31	-0.2
5,395,166	+		PFLU_RS24100	0.31	-0.4
5,395,166	+		PFLU_RS24100	0.31	+0.5
5,395,166	+		PFLU_RS24100	0.31	+0.8
5,395,166	+		PFLU_RS24100	0.31	+0.8
5,395,166	+		PFLU_RS24100	0.31	-0.4
5,395,166	+		PFLU_RS24100	0.31	+2.1
5,395,166	+		PFLU_RS24100	0.31	-0.4
5,395,166	+		PFLU_RS24100	0.31	+1.5
5,395,166	+		PFLU_RS24100	0.31	+0.1
5,395,167	-		PFLU_RS24100	0.31	+0.5
5,395,167	-		PFLU_RS24100	0.31	+0.0
5,395,167	-		PFLU_RS24100	0.31	-0.5
5,395,167	-		PFLU_RS24100	0.31	+0.9
5,395,167	-		PFLU_RS24100	0.31	+0.2
5,395,167	-		PFLU_RS24100	0.31	+1.5
5,395,167	-		PFLU_RS24100	0.31	-0.6
5,395,167	-		PFLU_RS24100	0.31	+1.5
5,395,167	-		PFLU_RS24100	0.31	-1.5
5,395,167	-		PFLU_RS24100	0.31	-2.1
5,395,167	-		PFLU_RS24100	0.31	-1.4
5,395,167	-		PFLU_RS24100	0.31	-0.6
5,395,167	-		PFLU_RS24100	0.31	+0.7
5,395,167	-		PFLU_RS24100	0.31	+1.4
5,395,167	-		PFLU_RS24100	0.31	+0.4
5,395,167	-		PFLU_RS24100	0.31	-0.1
5,395,167	-		PFLU_RS24100	0.31	-0.5
5,395,167	-		PFLU_RS24100	0.31	+0.9
5,395,167	-		PFLU_RS24100	0.31	+1.5
5,395,167	-		PFLU_RS24100	0.31	+0.2
5,395,167	-		PFLU_RS24100	0.31	+2.3
5,395,167	-		PFLU_RS24100	0.31	-0.2
5,395,167	-		PFLU_RS24100	0.31	+0.4
5,395,290	+		PFLU_RS24100	0.47	-0.8
5,395,290	+		PFLU_RS24100	0.47	-0.3
5,395,290	+		PFLU_RS24100	0.47	+1.1
5,395,290	+		PFLU_RS24100	0.47	+1.5
5,395,290	+		PFLU_RS24100	0.47	-0.9
5,395,291	-		PFLU_RS24100	0.47	-0.3
5,395,291	-		PFLU_RS24100	0.47	-1.3
5,395,291	-		PFLU_RS24100	0.47	-0.1
5,395,291	-		PFLU_RS24100	0.47	+0.2
5,395,291	-		PFLU_RS24100	0.47	+2.5
5,395,309	+		PFLU_RS24100	0.50	+0.9
5,395,381	+		PFLU_RS24100	0.59	+0.0
5,395,381	+		PFLU_RS24100	0.59	+0.6
5,395,381	+		PFLU_RS24100	0.59	-0.5
5,395,381	+		PFLU_RS24100	0.59	+2.1
5,395,381	+		PFLU_RS24100	0.59	+0.4
5,395,381	+		PFLU_RS24100	0.59	+0.8
5,395,381	+		PFLU_RS24100	0.59	+0.3
5,395,381	+		PFLU_RS24100	0.59	-1.0
5,395,381	+		PFLU_RS24100	0.59	-0.8
5,395,382	-		PFLU_RS24100	0.59	-0.5
5,395,382	-		PFLU_RS24100	0.59	-1.1
5,395,382	-		PFLU_RS24100	0.59	+0.8
5,395,382	-		PFLU_RS24100	0.59	-1.5
5,395,382	-		PFLU_RS24100	0.59	-0.1
5,395,382	-		PFLU_RS24100	0.59	-1.5
5,395,425	+		PFLU_RS24100	0.65	+0.7
5,395,425	+		PFLU_RS24100	0.65	-1.1
5,395,425	+		PFLU_RS24100	0.65	-0.2
5,395,425	+		PFLU_RS24100	0.65	-0.5
5,395,425	+		PFLU_RS24100	0.65	-0.4
5,395,425	+		PFLU_RS24100	0.65	+0.7
5,395,425	+		PFLU_RS24100	0.65	+1.0
5,395,425	+		PFLU_RS24100	0.65	-0.1
5,395,425	+		PFLU_RS24100	0.65	-0.1
5,395,426	-		PFLU_RS24100	0.65	-0.1
5,395,426	-		PFLU_RS24100	0.65	+0.5
5,395,426	-		PFLU_RS24100	0.65	-1.3
5,395,426	-		PFLU_RS24100	0.65	-1.2
5,395,426	-		PFLU_RS24100	0.65	-0.5
5,395,426	-		PFLU_RS24100	0.65	+1.0
5,395,426	-		PFLU_RS24100	0.65	-0.7
5,395,426	-		PFLU_RS24100	0.65	-0.4
5,395,684	+				-1.1
5,395,684	+				+0.2
5,395,684	+				-0.1
5,395,685	-				+0.2
5,395,705	+				+2.1
5,395,714	+				-0.3
5,395,715	-				-1.2
5,395,715	-				+0.5
5,395,747	+				+0.0
5,395,747	+				-0.4
5,395,747	+				+0.0