Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18950

Experiment: L-Alanine 15 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine 15 mM (C)
4,285,649	-		PFLU_RS18945	0.27	-0.5
4,285,692	+		PFLU_RS18945	0.31	+0.1
4,285,692	+		PFLU_RS18945	0.31	-0.1
4,285,693	-		PFLU_RS18945	0.32	+0.5
4,285,693	-		PFLU_RS18945	0.32	-0.3
4,285,908	+		PFLU_RS18945	0.54	-0.5
4,285,908	+		PFLU_RS18945	0.54	+0.2
4,285,908	+		PFLU_RS18945	0.54	-0.2
4,285,908	+		PFLU_RS18945	0.54	+0.1
4,285,971	+		PFLU_RS18945	0.61	+1.9
4,285,971	+		PFLU_RS18945	0.61	-0.1
4,285,971	+		PFLU_RS18945	0.61	-1.5
4,285,971	+		PFLU_RS18945	0.61	+1.1
4,285,971	+		PFLU_RS18945	0.61	+0.3
4,285,971	+		PFLU_RS18945	0.61	-0.4
4,285,972	-		PFLU_RS18945	0.61	-0.0
4,285,988	+		PFLU_RS18945	0.63	+0.5
4,285,989	-		PFLU_RS18945	0.63	-0.5
4,285,989	-		PFLU_RS18945	0.63	+0.9
4,285,994	+		PFLU_RS18945	0.64	-0.2
4,285,994	+		PFLU_RS18945	0.64	-0.4
4,285,994	+		PFLU_RS18945	0.64	-0.7
4,285,995	-		PFLU_RS18945	0.64	-0.5
4,285,995	-		PFLU_RS18945	0.64	-0.5
4,285,995	-		PFLU_RS18945	0.64	+0.5
4,285,995	-		PFLU_RS18945	0.64	-0.2
4,285,995	-		PFLU_RS18945	0.64	+0.4
4,285,995	-		PFLU_RS18945	0.64	-1.2
4,285,995	-		PFLU_RS18945	0.64	-0.4
4,286,085	+		PFLU_RS18945	0.73	+0.3
4,286,085	+		PFLU_RS18945	0.73	+0.4
4,286,085	+		PFLU_RS18945	0.73	-1.3
4,286,085	+		PFLU_RS18945	0.73	+0.3
4,286,086	-		PFLU_RS18945	0.74	-1.9
4,286,086	-		PFLU_RS18945	0.74	-0.3
4,286,086	-		PFLU_RS18945	0.74	-0.1
4,286,086	-		PFLU_RS18945	0.74	+0.8
4,286,086	-		PFLU_RS18945	0.74	-0.6
4,286,086	-		PFLU_RS18945	0.74	+0.4
4,286,086	-		PFLU_RS18945	0.74	+0.6
4,286,086	-		PFLU_RS18945	0.74	-0.5
4,286,217	+		PFLU_RS18945	0.88	+0.8
4,286,217	+		PFLU_RS18945	0.88	-0.1
4,286,218	-		PFLU_RS18945	0.88	+1.1
4,286,218	-		PFLU_RS18945	0.88	-0.1
4,286,332	-				+0.7
4,286,332	-				+0.5
4,286,339	-				-1.1
4,286,339	-				+0.3
4,286,339	-				-0.9
4,286,339	-				+0.4
4,286,339	-				+1.5
4,286,379	+				+0.1
4,286,405	+				+1.4
4,286,406	-				+2.1
4,286,406	-				+0.2
4,286,406	-				-0.1
4,286,466	+				+1.2
4,286,466	+				+0.7
4,286,466	+				-0.1
4,286,466	+				+0.4
4,286,466	+				+0.4
4,286,466	+				+0.4
4,286,466	+				+1.6
4,286,466	+				+0.5
4,286,506	+				+0.7
4,286,506	+				+0.1
4,286,506	+				+1.4
4,286,506	+				+0.8
4,286,507	-				-0.2
4,286,507	-				-1.7
4,286,507	-				-1.3
4,286,507	-				+1.1
4,286,507	-				+0.9
4,286,511	+				-0.9
4,286,511	+				-0.2
4,286,538	+				-0.2
4,286,538	+				-0.6
4,286,538	+				-0.9
4,286,538	+				+0.8
4,286,538	+				-0.0
4,286,539	-				+0.1
4,286,539	-				+0.7
4,286,539	-				-2.1
4,286,539	-				-2.2
4,286,554	+				-0.4
4,286,554	+				+1.0
4,286,554	+				+0.9
4,286,554	+				-0.9
4,286,555	-				-0.7
4,286,555	-				-0.1
4,286,555	-				-0.6
4,286,555	-				-1.0
4,286,611	+		PFLU_RS18950	0.18	-0.4
4,286,611	+		PFLU_RS18950	0.18	-1.6
4,286,612	-		PFLU_RS18950	0.18	-0.7
4,286,612	-		PFLU_RS18950	0.18	+1.4
4,286,612	-		PFLU_RS18950	0.18	+0.2
4,286,612	-		PFLU_RS18950	0.18	-0.8
4,286,658	+		PFLU_RS18950	0.30	-1.1
4,286,658	+		PFLU_RS18950	0.30	-2.1
4,286,658	+		PFLU_RS18950	0.30	-0.6
4,286,659	-		PFLU_RS18950	0.30	-0.7
4,286,659	-		PFLU_RS18950	0.30	-3.1
4,286,659	-		PFLU_RS18950	0.30	-1.7
4,286,659	-		PFLU_RS18950	0.30	-1.3
4,286,662	+		PFLU_RS18950	0.31	-0.2
4,286,662	+		PFLU_RS18950	0.31	+0.9
4,286,662	+		PFLU_RS18950	0.31	+0.4
4,286,662	+		PFLU_RS18950	0.31	-0.2
4,286,663	-		PFLU_RS18950	0.31	-1.2
4,286,663	-		PFLU_RS18950	0.31	+0.1
4,286,663	-		PFLU_RS18950	0.31	-0.8
4,286,663	-		PFLU_RS18950	0.31	-1.8
4,286,755	+		PFLU_RS18950	0.54	-0.9
4,286,756	-		PFLU_RS18950	0.54	+1.1
4,286,756	-		PFLU_RS18950	0.54	-0.9
4,286,756	-		PFLU_RS18950	0.54	-1.4
4,286,943	+				+0.2
4,286,943	+				+0.4
4,286,943	+				+0.4
4,286,944	-				+0.7
4,286,944	-				-1.5
4,286,970	+				-0.5
4,286,970	+				+1.6
4,286,970	+				-1.2
4,286,970	+				-1.9
4,286,970	+				-0.5
4,286,970	+				-1.1
4,286,970	+				+0.8
4,286,970	+				+2.1
4,286,970	+				-1.6
4,286,970	+				-1.2
4,286,971	-				+0.4
4,286,971	-				-0.9
4,286,971	-				+0.5
4,286,971	-				-0.9
4,286,971	-				+0.1
4,286,971	-				+2.3
4,286,971	-				+0.1
4,286,971	-				-0.1
4,286,971	-				+0.6
4,286,971	-				-0.1
4,287,022	+				+1.1
4,287,022	+				+1.5
4,287,022	+				+1.8
4,287,023	-				+0.4
4,287,023	-				+0.1
4,287,080	+		PFLU_RS18955	0.14	+0.4
4,287,080	+		PFLU_RS18955	0.14	-0.7
4,287,080	+		PFLU_RS18955	0.14	-0.5
4,287,080	+		PFLU_RS18955	0.14	-1.5
4,287,080	+		PFLU_RS18955	0.14	+0.1
4,287,080	+		PFLU_RS18955	0.14	+1.4
4,287,080	+		PFLU_RS18955	0.14	-0.9
4,287,080	+		PFLU_RS18955	0.14	+1.1
4,287,080	+		PFLU_RS18955	0.14	+1.9
4,287,080	+		PFLU_RS18955	0.14	+1.1
4,287,080	+		PFLU_RS18955	0.14	-0.2
4,287,081	-		PFLU_RS18955	0.14	-0.9
4,287,081	-		PFLU_RS18955	0.14	+0.1
4,287,081	-		PFLU_RS18955	0.14	+0.5
4,287,081	-		PFLU_RS18955	0.14	+0.1
4,287,081	-		PFLU_RS18955	0.14	-1.7
4,287,081	-		PFLU_RS18955	0.14	-1.5
4,287,083	-		PFLU_RS18955	0.15	+1.1
4,287,083	-		PFLU_RS18955	0.15	-0.9
4,287,145	-		PFLU_RS18955	0.22	-1.4
4,287,145	-		PFLU_RS18955	0.22	+0.2
4,287,145	-		PFLU_RS18955	0.22	-1.5
4,287,179	+		PFLU_RS18955	0.25	-0.5
4,287,179	+		PFLU_RS18955	0.25	-0.0
4,287,179	+		PFLU_RS18955	0.25	-0.0
4,287,179	+		PFLU_RS18955	0.25	-0.9
4,287,179	+		PFLU_RS18955	0.25	+0.9
4,287,179	+		PFLU_RS18955	0.25	+0.3
4,287,180	-		PFLU_RS18955	0.25	+0.5
4,287,180	-		PFLU_RS18955	0.25	-1.2
4,287,180	-		PFLU_RS18955	0.25	+1.6
4,287,180	-		PFLU_RS18955	0.25	-0.9
4,287,180	-		PFLU_RS18955	0.25	-1.4
4,287,180	-		PFLU_RS18955	0.25	+1.1
4,287,180	-		PFLU_RS18955	0.25	+0.3
4,287,180	-		PFLU_RS18955	0.25	-0.9
4,287,286	+		PFLU_RS18955	0.37	+0.9
4,287,286	+		PFLU_RS18955	0.37	-1.4
4,287,287	-		PFLU_RS18955	0.37	-0.9
4,287,287	-		PFLU_RS18955	0.37	+1.3
4,287,371	+		PFLU_RS18955	0.47	+0.5
4,287,371	+		PFLU_RS18955	0.47	+0.1
4,287,372	-		PFLU_RS18955	0.47	-2.6
4,287,372	-		PFLU_RS18955	0.47	+1.1
4,287,372	-		PFLU_RS18955	0.47	+0.1
4,287,372	-		PFLU_RS18955	0.47	-0.5
4,287,372	-		PFLU_RS18955	0.47	+0.3
4,287,372	-		PFLU_RS18955	0.47	-1.7
4,287,449	+		PFLU_RS18955	0.55	-0.7
4,287,449	+		PFLU_RS18955	0.55	+0.7
4,287,449	+		PFLU_RS18955	0.55	+1.1
4,287,449	+		PFLU_RS18955	0.55	+0.5
4,287,449	+		PFLU_RS18955	0.55	+0.7
4,287,450	-		PFLU_RS18955	0.55	+1.4
4,287,450	-		PFLU_RS18955	0.55	-0.5
4,287,450	-		PFLU_RS18955	0.55	-1.7
4,287,450	-		PFLU_RS18955	0.55	+0.4
4,287,450	-		PFLU_RS18955	0.55	+1.1
4,287,450	-		PFLU_RS18955	0.55	+1.1
4,287,450	-		PFLU_RS18955	0.55	+0.5
4,287,450	-		PFLU_RS18955	0.55	-1.5
4,287,450	-		PFLU_RS18955	0.55	-1.1
4,287,450	-		PFLU_RS18955	0.55	+1.7
4,287,450	-		PFLU_RS18955	0.55	-0.7
4,287,464	+		PFLU_RS18955	0.57	-0.9
4,287,464	+		PFLU_RS18955	0.57	-1.5
4,287,465	-		PFLU_RS18955	0.57	+0.1
4,287,465	-		PFLU_RS18955	0.57	+3.1
4,287,465	-		PFLU_RS18955	0.57	-1.6
4,287,465	-		PFLU_RS18955	0.57	+1.6
4,287,465	-		PFLU_RS18955	0.57	-0.1
4,287,581	-		PFLU_RS18955	0.70	-1.2
4,287,581	-		PFLU_RS18955	0.70	+0.1
4,287,581	-		PFLU_RS18955	0.70	-0.4
4,287,581	-		PFLU_RS18955	0.70	-0.5
4,287,584	+		PFLU_RS18955	0.70	-1.2
4,287,584	+		PFLU_RS18955	0.70	+0.5
4,287,584	+		PFLU_RS18955	0.70	+0.5
4,287,584	+		PFLU_RS18955	0.70	+0.5
4,287,584	+		PFLU_RS18955	0.70	-1.7
4,287,584	+		PFLU_RS18955	0.70	-1.5
4,287,584	+		PFLU_RS18955	0.70	-0.2
4,287,584	+		PFLU_RS18955	0.70	+0.1
4,287,584	+		PFLU_RS18955	0.70	+1.0
4,287,584	+		PFLU_RS18955	0.70	+0.3
4,287,584	+		PFLU_RS18955	0.70	+0.9
4,287,585	-		PFLU_RS18955	0.70	-1.2
4,287,585	-		PFLU_RS18955	0.70	+0.2
4,287,585	-		PFLU_RS18955	0.70	-0.2
4,287,585	-		PFLU_RS18955	0.70	-1.7
4,287,585	-		PFLU_RS18955	0.70	+1.1
4,287,585	-		PFLU_RS18955	0.70	+0.6
4,287,585	-		PFLU_RS18955	0.70	+0.5
4,287,585	-		PFLU_RS18955	0.70	-1.1
4,287,585	-		PFLU_RS18955	0.70	+0.3
4,287,585	-		PFLU_RS18955	0.70	+1.3
4,287,585	-		PFLU_RS18955	0.70	-0.7
4,287,585	-		PFLU_RS18955	0.70	+0.1
4,287,585	-		PFLU_RS18955	0.70	-0.1
4,287,585	-		PFLU_RS18955	0.70	+0.3
4,287,585	-		PFLU_RS18955	0.70	+0.4
4,287,604	+		PFLU_RS18955	0.73	+0.9
4,287,604	+		PFLU_RS18955	0.73	+0.4
4,287,608	+		PFLU_RS18955	0.73	-0.4
4,287,608	+		PFLU_RS18955	0.73	-0.0
4,287,608	+		PFLU_RS18955	0.73	-0.5
4,287,609	-		PFLU_RS18955	0.73	-0.3
4,287,609	-		PFLU_RS18955	0.73	+0.4
4,287,649	+		PFLU_RS18955	0.78	+0.3
4,287,674	+		PFLU_RS18955	0.80	+2.7
4,287,719	+		PFLU_RS18955	0.85	+0.7
4,287,719	+		PFLU_RS18955	0.85	+1.1
4,287,720	-		PFLU_RS18955	0.85	-1.9
4,287,852	+				+0.5
4,287,853	-				-1.2
4,287,886	-				-0.1
4,287,886	-				-0.0
4,287,909	+				+0.4
4,287,909	+				-0.9
4,287,909	+				+0.4
4,287,909	+				-0.1
4,287,909	+				-0.0
4,287,909	+				+0.3
4,287,909	+				-0.0
4,287,909	+				-0.8
4,287,909	+				+0.2
4,287,910	-				-0.5
4,287,910	-				-0.8
4,287,910	-				-1.7
4,287,910	-				-1.1
4,287,910	-				+0.5
4,287,910	-				-0.4
4,287,910	-				+0.7
4,287,910	-				-0.8
4,287,910	-				+1.1
4,287,910	-				-0.8
4,287,910	-				+0.7
4,287,919	+				+1.3
4,287,919	+				+0.2
4,287,919	+				+0.5
4,287,920	-				+0.1