Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12580

Experiment: L-Alanine 15 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine 15 mM (C)
2,839,237	+		PFLU_RS12575	0.27	+0.9
2,839,237	+		PFLU_RS12575	0.27	+1.3
2,839,238	-		PFLU_RS12575	0.27	-0.5
2,839,238	-		PFLU_RS12575	0.27	+1.2
2,839,239	+		PFLU_RS12575	0.27	-2.7
2,839,239	+		PFLU_RS12575	0.27	-0.2
2,839,239	+		PFLU_RS12575	0.27	+0.6
2,839,240	-		PFLU_RS12575	0.27	+0.9
2,839,272	+		PFLU_RS12575	0.31	-1.1
2,839,272	+		PFLU_RS12575	0.31	-0.4
2,839,272	+		PFLU_RS12575	0.31	-1.7
2,839,272	+		PFLU_RS12575	0.31	-0.3
2,839,291	+		PFLU_RS12575	0.33	+0.8
2,839,291	+		PFLU_RS12575	0.33	-0.3
2,839,291	+		PFLU_RS12575	0.33	-1.5
2,839,292	-		PFLU_RS12575	0.33	+0.9
2,839,292	-		PFLU_RS12575	0.33	+0.0
2,839,292	-		PFLU_RS12575	0.33	-0.8
2,839,292	-		PFLU_RS12575	0.33	+0.0
2,839,292	-		PFLU_RS12575	0.33	+0.3
2,839,434	+		PFLU_RS12575	0.49	+0.1
2,839,435	-		PFLU_RS12575	0.49	+0.6
2,839,492	+		PFLU_RS12575	0.55	-0.1
2,839,492	+		PFLU_RS12575	0.55	-0.4
2,839,492	+		PFLU_RS12575	0.55	+0.6
2,839,492	+		PFLU_RS12575	0.55	+0.9
2,839,492	+		PFLU_RS12575	0.55	+0.5
2,839,492	+		PFLU_RS12575	0.55	+0.3
2,839,493	-		PFLU_RS12575	0.55	-0.2
2,839,493	-		PFLU_RS12575	0.55	-2.3
2,839,493	-		PFLU_RS12575	0.55	-0.1
2,839,493	-		PFLU_RS12575	0.55	-0.8
2,839,493	-		PFLU_RS12575	0.55	+0.4
2,839,493	-		PFLU_RS12575	0.55	+1.2
2,839,621	+		PFLU_RS12575	0.69	+0.5
2,839,622	-		PFLU_RS12575	0.69	+0.1
2,839,622	-		PFLU_RS12575	0.69	-0.3
2,839,622	-		PFLU_RS12575	0.69	-0.7
2,839,634	+		PFLU_RS12575	0.71	+0.4
2,839,634	+		PFLU_RS12575	0.71	+0.7
2,839,634	+		PFLU_RS12575	0.71	-0.1
2,839,634	+		PFLU_RS12575	0.71	-1.2
2,839,634	+		PFLU_RS12575	0.71	-0.3
2,839,634	+		PFLU_RS12575	0.71	-0.1
2,839,634	+		PFLU_RS12575	0.71	-0.3
2,839,635	-		PFLU_RS12575	0.71	+0.1
2,839,635	-		PFLU_RS12575	0.71	+1.1
2,839,635	-		PFLU_RS12575	0.71	-0.7
2,839,774	+		PFLU_RS12575	0.86	+0.2
2,839,774	+		PFLU_RS12575	0.86	-1.2
2,839,774	+		PFLU_RS12575	0.86	+0.6
2,839,774	+		PFLU_RS12575	0.86	-1.9
2,839,774	+		PFLU_RS12575	0.86	-0.1
2,839,774	+		PFLU_RS12575	0.86	+0.0
2,839,774	+		PFLU_RS12575	0.86	+0.2
2,839,774	+		PFLU_RS12575	0.86	-0.3
2,839,774	+		PFLU_RS12575	0.86	+0.6
2,839,774	+		PFLU_RS12575	0.86	+0.9
2,839,775	-		PFLU_RS12575	0.86	+0.1
2,839,775	-		PFLU_RS12575	0.86	-0.9
2,839,775	-		PFLU_RS12575	0.86	+1.3
2,839,775	-		PFLU_RS12575	0.86	-1.0
2,839,775	-		PFLU_RS12575	0.86	-0.3
2,839,775	-		PFLU_RS12575	0.86	+0.7
2,839,775	-		PFLU_RS12575	0.86	+0.1
2,839,775	-		PFLU_RS12575	0.86	-0.3
2,839,776	+		PFLU_RS12575	0.86	-0.3
2,839,777	-		PFLU_RS12575	0.86	+0.5
2,839,777	-		PFLU_RS12575	0.86	+1.1
2,839,794	+		PFLU_RS12575	0.88	+0.2
2,839,870	+				-0.4
2,839,870	+				-0.2
2,839,870	+				+0.3
2,839,870	+				+0.9
2,839,870	+				-1.0
2,839,870	+				-1.1
2,839,870	+				+0.5
2,839,870	+				+1.5
2,839,870	+				-0.1
2,839,871	-				+0.5
2,839,871	-				+0.5
2,839,871	-				+0.7
2,839,871	-				+0.4
2,839,871	-				-0.1
2,839,871	-				+0.8
2,839,871	-				+0.6
2,839,892	+				+0.7
2,839,892	+				-0.9
2,839,893	-				+0.1
2,839,893	-				-0.1
2,839,893	-				-0.1
2,839,897	+				-1.1
2,839,897	+				+1.0
2,839,897	+				+0.1
2,839,897	+				-0.2
2,839,897	+				+0.2
2,839,897	+				+0.6
2,839,897	+				-0.1
2,839,898	-				+1.5
2,839,898	-				+0.9
2,839,898	-				+1.5
2,839,925	+				-0.8
2,839,925	+				+0.2
2,839,925	+				+0.3
2,839,925	+				+0.5
2,839,925	+				+0.2
2,839,925	+				-0.2
2,839,925	+				+0.7
2,839,925	+				-0.7
2,839,925	+				+0.2
2,839,925	+				-0.3
2,839,926	-				+0.3
2,839,926	-				+0.8
2,839,926	-				-1.1
2,839,926	-				+0.0
2,839,926	-				+0.7
2,839,926	-				-0.3
2,839,990	+				+0.6
2,839,990	+				-0.1
2,839,990	+				+0.3
2,839,990	+				-0.6
2,839,991	-				-0.4
2,839,991	-				-0.3
2,839,991	-				+2.2
2,840,000	+				-0.2
2,840,001	-				+0.0
2,840,046	+				+0.2
2,840,046	+				-0.1
2,840,046	+				+0.1
2,840,046	+				+1.1
2,840,046	+				-0.1
2,840,046	+				+1.1
2,840,046	+				+0.9
2,840,046	+				+0.3
2,840,046	+				-0.1
2,840,047	-				+2.1
2,840,047	-				-0.8
2,840,047	-				+0.0
2,840,047	-				-0.3
2,840,047	-				+1.9
2,840,047	-				-0.4
2,840,047	-				+0.1
2,840,116	+				+0.3
2,840,117	-				-2.5
2,840,157	+				-0.9
2,840,157	+				+1.5
2,840,157	+				-1.3
2,840,157	+				-0.2
2,840,157	+				+1.3
2,840,158	-				-1.7
2,840,158	-				-0.6
2,840,158	-				+0.1
2,840,158	-				+1.9
2,840,158	-				+0.3
2,840,158	-				-0.2
2,840,158	-				+0.4
2,840,158	-				+0.2
2,840,158	-				+1.2
2,840,158	-				+0.3
2,840,158	-				-0.5
2,840,161	+				+0.5
2,840,162	-				+0.1
2,840,560	+		PFLU_RS12580	0.41	-1.7
2,840,560	+		PFLU_RS12580	0.41	-0.4
2,840,560	+		PFLU_RS12580	0.41	-1.5
2,840,560	+		PFLU_RS12580	0.41	-0.9
2,840,560	+		PFLU_RS12580	0.41	-1.7
2,840,560	+		PFLU_RS12580	0.41	-1.5
2,840,561	-		PFLU_RS12580	0.41	-1.9
2,840,561	-		PFLU_RS12580	0.41	-0.3
2,840,561	-		PFLU_RS12580	0.41	-0.8
2,840,569	+		PFLU_RS12580	0.42	-0.4
2,840,569	+		PFLU_RS12580	0.42	+1.9
2,840,569	+		PFLU_RS12580	0.42	+0.6
2,840,570	-		PFLU_RS12580	0.42	+0.1
2,840,570	-		PFLU_RS12580	0.42	-2.3
2,840,608	+		PFLU_RS12580	0.46	-1.7
2,840,608	+		PFLU_RS12580	0.46	+0.1
2,840,608	+		PFLU_RS12580	0.46	-0.1
2,840,608	+		PFLU_RS12580	0.46	+0.3
2,840,608	+		PFLU_RS12580	0.46	-0.7
2,840,608	+		PFLU_RS12580	0.46	-0.1
2,840,608	+		PFLU_RS12580	0.46	-0.1
2,840,608	+		PFLU_RS12580	0.46	-1.3
2,840,608	+		PFLU_RS12580	0.46	-1.7
2,840,609	-		PFLU_RS12580	0.46	-2.4
2,840,609	-		PFLU_RS12580	0.46	-1.9
2,840,609	-		PFLU_RS12580	0.46	-0.1
2,840,609	-		PFLU_RS12580	0.46	-1.9
2,840,782	+		PFLU_RS12580	0.65	-0.7
2,840,783	-		PFLU_RS12580	0.66	-1.1
2,840,783	-		PFLU_RS12580	0.66	-1.1
2,840,783	-		PFLU_RS12580	0.66	-0.9
2,840,812	+		PFLU_RS12580	0.69	-1.1
2,840,812	+		PFLU_RS12580	0.69	-0.4
2,840,812	+		PFLU_RS12580	0.69	-1.4
2,840,812	+		PFLU_RS12580	0.69	+0.0
2,840,813	-		PFLU_RS12580	0.69	-0.3
2,840,813	-		PFLU_RS12580	0.69	-0.7
2,840,813	-		PFLU_RS12580	0.69	-0.4
2,840,962	+		PFLU_RS12580	0.85	-0.4
2,840,962	+		PFLU_RS12580	0.85	+0.6
2,840,962	+		PFLU_RS12580	0.85	-2.1
2,840,962	+		PFLU_RS12580	0.85	-0.9
2,840,963	-		PFLU_RS12580	0.85	+0.7
2,840,963	-		PFLU_RS12580	0.85	-0.7
2,840,963	-		PFLU_RS12580	0.85	-0.5
2,840,963	-		PFLU_RS12580	0.85	-1.3
2,840,963	-		PFLU_RS12580	0.85	-1.3
2,841,001	+		PFLU_RS12580	0.90	-0.7
2,841,002	-		PFLU_RS12580	0.90	+1.5
2,841,002	-		PFLU_RS12580	0.90	-2.5
2,841,056	+				-1.7
2,841,056	+				-1.3
2,841,147	+				-1.4
2,841,148	-				-0.1
2,841,148	-				+0.2
2,841,154	+				-1.5
2,841,154	+				-2.4
2,841,155	-				-0.0
2,841,169	-				-1.3
2,841,230	+		PFLU_RS31580	0.25	-0.3
2,841,231	-		PFLU_RS31580	0.26	+0.3
2,841,231	-		PFLU_RS31580	0.26	+0.9
2,841,231	-		PFLU_RS31580	0.26	+0.6
2,841,231	-		PFLU_RS31580	0.26	-0.7
2,841,231	-		PFLU_RS31580	0.26	-0.9
2,841,231	-		PFLU_RS31580	0.26	-0.7
2,841,231	-		PFLU_RS31580	0.26	-0.5
2,841,231	-		PFLU_RS31580	0.26	+0.2
2,841,304	+		PFLU_RS31580	0.62	+0.4
2,841,304	+		PFLU_RS31580	0.62	-0.6
2,841,304	+		PFLU_RS31580	0.62	+0.7
2,841,304	+		PFLU_RS31580	0.62	-1.0
2,841,305	-		PFLU_RS31580	0.62	-0.4
2,841,305	-		PFLU_RS31580	0.62	-0.7
2,841,305	-		PFLU_RS31580	0.62	-1.1
2,841,305	-		PFLU_RS31580	0.62	-1.7
2,841,366	+				-1.1
2,841,367	-				-0.0
2,841,452	+				+0.3
2,841,452	+				-0.4
2,841,453	-				+0.7
2,841,453	-				-0.6
2,841,453	-				-0.5
2,841,486	+				-0.1
2,841,487	-				-0.7
2,841,503	+				-1.1
2,841,503	+				+0.1
2,841,503	+				+0.1
2,841,503	+				+0.2
2,841,504	-				-0.1
2,841,504	-				+0.7
2,841,504	-				-0.6
2,841,504	-				+1.5
2,841,592	+		PFLU_RS12585	0.11	+1.9
2,841,592	+		PFLU_RS12585	0.11	+0.3
2,841,592	+		PFLU_RS12585	0.11	-0.7
2,841,592	+		PFLU_RS12585	0.11	-0.6
2,841,593	-		PFLU_RS12585	0.11	+0.7
2,841,593	-		PFLU_RS12585	0.11	-2.0
2,841,725	+		PFLU_RS12585	0.18	+1.2
2,841,726	-		PFLU_RS12585	0.18	+0.9
2,841,782	-		PFLU_RS12585	0.21	-0.2
2,841,839	+		PFLU_RS12585	0.24	+1.7
2,841,839	+		PFLU_RS12585	0.24	-0.4
2,841,839	+		PFLU_RS12585	0.24	+1.9
2,841,839	+		PFLU_RS12585	0.24	-1.3
2,841,839	+		PFLU_RS12585	0.24	+0.3
2,841,840	-		PFLU_RS12585	0.24	-0.2
2,841,840	-		PFLU_RS12585	0.24	-0.7
2,841,840	-		PFLU_RS12585	0.24	-0.4
2,841,866	+		PFLU_RS12585	0.25	+0.9
2,841,867	-		PFLU_RS12585	0.25	+0.5
2,842,084	+		PFLU_RS12585	0.36	-0.2
2,842,084	+		PFLU_RS12585	0.36	+1.3
2,842,084	+		PFLU_RS12585	0.36	-1.1
2,842,085	-		PFLU_RS12585	0.36	-2.5
2,842,085	-		PFLU_RS12585	0.36	-0.7