Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14225

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,179,917	-				-0.2
3,179,981	+				-0.8
3,180,080	+		PFLU_RS14220	0.12	-2.8
3,180,080	+		PFLU_RS14220	0.12	-1.5
3,180,081	-		PFLU_RS14220	0.12	+0.3
3,180,081	-		PFLU_RS14220	0.12	+0.2
3,180,081	-		PFLU_RS14220	0.12	+0.5
3,180,081	-		PFLU_RS14220	0.12	-0.7
3,180,110	+		PFLU_RS14220	0.16	+0.4
3,180,110	+		PFLU_RS14220	0.16	-0.8
3,180,110	+		PFLU_RS14220	0.16	-1.8
3,180,110	+		PFLU_RS14220	0.16	+0.6
3,180,110	+		PFLU_RS14220	0.16	-0.5
3,180,111	-		PFLU_RS14220	0.16	+0.3
3,180,111	-		PFLU_RS14220	0.16	-0.2
3,180,111	-		PFLU_RS14220	0.16	+0.5
3,180,111	-		PFLU_RS14220	0.16	+0.1
3,180,245	+		PFLU_RS14220	0.32	+0.3
3,180,245	+		PFLU_RS14220	0.32	+0.6
3,180,245	+		PFLU_RS14220	0.32	+0.1
3,180,246	-		PFLU_RS14220	0.32	-0.1
3,180,246	-		PFLU_RS14220	0.32	+0.5
3,180,263	+		PFLU_RS14220	0.35	-0.1
3,180,450	-		PFLU_RS14220	0.57	+1.1
3,180,572	+		PFLU_RS14220	0.72	-0.3
3,180,572	+		PFLU_RS14220	0.72	+0.3
3,180,572	+		PFLU_RS14220	0.72	-1.1
3,180,573	-		PFLU_RS14220	0.72	-0.1
3,180,573	-		PFLU_RS14220	0.72	+0.3
3,180,573	-		PFLU_RS14220	0.72	+0.0
3,180,573	-		PFLU_RS14220	0.72	-1.4
3,180,593	+		PFLU_RS14220	0.75	-0.5
3,180,594	-		PFLU_RS14220	0.75	-0.1
3,180,594	-		PFLU_RS14220	0.75	+0.3
3,180,686	+		PFLU_RS14220	0.86	-0.5
3,180,686	+		PFLU_RS14220	0.86	+1.1
3,180,687	-		PFLU_RS14220	0.86	+0.5
3,180,827	+				+2.5
3,180,828	-				-0.2
3,180,921	-				+1.5
3,180,944	+				+0.5
3,180,944	+				-1.5
3,180,944	+				-0.9
3,180,944	+				-1.1
3,180,987	+		PFLU_RS14225	0.12	-0.0
3,181,070	+		PFLU_RS14225	0.19	+0.5
3,181,070	+		PFLU_RS14225	0.19	+0.2
3,181,071	-		PFLU_RS14225	0.19	+0.4
3,181,216	-		PFLU_RS14225	0.30	-2.0
3,181,216	-		PFLU_RS14225	0.30	-0.5
3,181,319	+		PFLU_RS14225	0.38	-1.6
3,181,319	+		PFLU_RS14225	0.38	+0.0
3,181,320	-		PFLU_RS14225	0.38	+0.6
3,181,369	+		PFLU_RS14225	0.42	-3.1
3,181,369	+		PFLU_RS14225	0.42	+1.3
3,181,369	+		PFLU_RS14225	0.42	+0.6
3,181,369	+		PFLU_RS14225	0.42	-0.3
3,181,370	-		PFLU_RS14225	0.42	+0.2
3,181,370	-		PFLU_RS14225	0.42	-2.1
3,181,370	-		PFLU_RS14225	0.42	-0.2
3,181,370	-		PFLU_RS14225	0.42	-0.4
3,181,370	-		PFLU_RS14225	0.42	-1.0
3,181,370	-		PFLU_RS14225	0.42	-0.6
3,181,581	+		PFLU_RS14225	0.58	+0.1
3,181,582	-		PFLU_RS14225	0.58	+0.1
3,181,891	+		PFLU_RS14225	0.82	-0.8
3,181,891	+		PFLU_RS14225	0.82	+0.8
3,181,892	-		PFLU_RS14225	0.82	-0.1
3,181,892	-		PFLU_RS14225	0.82	-0.3
3,181,984	-		PFLU_RS14225	0.89	+1.7
3,181,984	-		PFLU_RS14225	0.89	-0.5
3,182,056	+				-0.1
3,182,132	+				-1.8
3,182,132	+				-0.1
3,182,132	+				+0.1
3,182,132	+				-1.1
3,182,132	+				+0.1
3,182,132	+				-1.5
3,182,132	+				-0.1
3,182,132	+				-0.2
3,182,132	+				-2.3
3,182,132	+				+0.5
3,182,132	+				-0.2
3,182,132	+				+0.1
3,182,132	+				-0.1
3,182,132	+				-0.7
3,182,132	+				+0.4
3,182,132	+				+0.2
3,182,132	+				-1.3
3,182,132	+				-0.2
3,182,132	+				+1.0
3,182,132	+				+0.1
3,182,133	-				-0.2
3,182,133	-				+1.0
3,182,133	-				+0.8
3,182,133	-				+0.2
3,182,133	-				-1.2
3,182,133	-				+0.5
3,182,133	-				-1.1
3,182,133	-				-0.4
3,182,133	-				-1.1
3,182,244	-				+0.1
3,182,254	+				+1.2
3,182,254	+				+0.5
3,182,254	+				+0.1
3,182,255	-				-0.9
3,182,255	-				+0.6
3,182,255	-				+0.5
3,182,255	-				-0.1
3,182,263	+				-0.8
3,182,264	-				-0.2
3,182,434	+		PFLU_RS14230	0.24	+1.6
3,182,434	+		PFLU_RS14230	0.24	+0.2
3,182,463	+		PFLU_RS14230	0.26	+1.5
3,182,463	+		PFLU_RS14230	0.26	+0.9
3,182,463	+		PFLU_RS14230	0.26	-0.5
3,182,463	+		PFLU_RS14230	0.26	+0.7
3,182,463	+		PFLU_RS14230	0.26	+0.1
3,182,463	+		PFLU_RS14230	0.26	-1.1
3,182,463	+		PFLU_RS14230	0.26	+0.3
3,182,463	+		PFLU_RS14230	0.26	-0.8
3,182,463	+		PFLU_RS14230	0.26	-0.4
3,182,463	+		PFLU_RS14230	0.26	-0.4
3,182,464	-		PFLU_RS14230	0.27	-0.8
3,182,464	-		PFLU_RS14230	0.27	-1.2
3,182,464	-		PFLU_RS14230	0.27	+0.7
3,182,464	-		PFLU_RS14230	0.27	+0.1
3,182,464	-		PFLU_RS14230	0.27	+0.5
3,182,464	-		PFLU_RS14230	0.27	-1.1
3,182,464	-		PFLU_RS14230	0.27	+1.0
3,182,464	-		PFLU_RS14230	0.27	-0.7
3,182,464	-		PFLU_RS14230	0.27	-0.3
3,182,464	-		PFLU_RS14230	0.27	-0.6
3,182,491	-		PFLU_RS14230	0.29	-1.1
3,182,491	-		PFLU_RS14230	0.29	+1.5
3,182,547	+		PFLU_RS14230	0.33	-0.1
3,182,548	-		PFLU_RS14230	0.33	+1.3
3,182,548	-		PFLU_RS14230	0.33	-0.3
3,182,623	+		PFLU_RS14230	0.40	-1.0
3,182,623	+		PFLU_RS14230	0.40	-0.2
3,182,623	+		PFLU_RS14230	0.40	+0.2
3,182,678	-		PFLU_RS14230	0.44	-1.1
3,182,678	-		PFLU_RS14230	0.44	-1.1
3,182,678	-		PFLU_RS14230	0.44	+0.5
3,182,767	+		PFLU_RS14230	0.52	+0.4
3,182,767	+		PFLU_RS14230	0.52	+0.8
3,182,767	+		PFLU_RS14230	0.52	+0.4
3,182,767	+		PFLU_RS14230	0.52	+0.9
3,182,767	+		PFLU_RS14230	0.52	-1.3
3,182,767	+		PFLU_RS14230	0.52	-0.4
3,182,767	+		PFLU_RS14230	0.52	+1.9
3,182,767	+		PFLU_RS14230	0.52	-0.4
3,182,768	-		PFLU_RS14230	0.52	-1.4
3,182,768	-		PFLU_RS14230	0.52	-0.8
3,182,768	-		PFLU_RS14230	0.52	+0.2
3,182,768	-		PFLU_RS14230	0.52	+0.1
3,182,768	-		PFLU_RS14230	0.52	-0.8
3,182,768	-		PFLU_RS14230	0.52	-0.6
3,182,768	-		PFLU_RS14230	0.52	+0.3
3,182,861	-		PFLU_RS14230	0.60	-0.0
3,182,861	-		PFLU_RS14230	0.60	-0.5
3,182,996	-		PFLU_RS14230	0.71	-1.3
3,182,996	-		PFLU_RS14230	0.71	-1.3
3,182,996	-		PFLU_RS14230	0.71	-0.6