Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12695

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
2,867,550	+		PFLU_RS12690	0.86	+0.3
2,867,550	+		PFLU_RS12690	0.86	-2.0
2,867,551	-		PFLU_RS12690	0.86	-0.4
2,867,551	-		PFLU_RS12690	0.86	+0.0
2,867,736	+				-0.5
2,867,737	-				+0.2
2,867,737	-				+0.1
2,867,916	+				-0.2
2,867,916	+				+0.3
2,867,917	-				-0.5
2,867,917	-				+1.6
2,867,917	-				+0.1
2,867,917	-				+0.6
2,867,917	-				+0.8
2,868,099	+				+0.8
2,868,099	+				-0.4
2,868,099	+				+0.2
2,868,124	-				-0.5
2,868,316	+				+1.1
2,868,316	+				+0.5
2,868,316	+				+1.2
2,868,339	+				+0.8
2,868,418	-				-0.8
2,868,420	+				-0.9
2,868,420	+				-0.2
2,868,420	+				-0.7
2,868,420	+				+0.1
2,868,420	+				+1.4
2,868,420	+				+0.3
2,868,420	+				+0.6
2,868,420	+				+2.6
2,868,420	+				-0.0
2,868,420	+				-2.6
2,868,420	+				-0.7
2,868,420	+				-1.2
2,868,420	+				-0.2
2,868,420	+				+0.8
2,868,420	+				-1.2
2,868,420	+				-0.6
2,868,420	+				+0.7
2,868,420	+				+1.0
2,868,421	-				+0.6
2,868,421	-				+0.4
2,868,421	-				+0.6
2,868,421	-				+1.3
2,868,421	-				+1.0
2,868,421	-				-0.0
2,868,421	-				+0.6
2,868,421	-				-1.1
2,868,421	-				+0.3
2,868,421	-				-0.4
2,868,421	-				+1.3
2,868,421	-				-0.4
2,868,421	-				+0.2
2,868,421	-				-0.8
2,868,421	-				-0.2
2,868,421	-				-1.4
2,868,432	+				-0.1
2,868,433	-				-0.4
2,868,554	+				-2.0
2,868,555	-				+0.2
2,868,555	-				-1.0
2,868,555	-				-0.0
2,868,555	-				+2.6
2,868,608	+				-0.4
2,868,609	-				-1.1
2,868,609	-				+1.6
2,868,634	+				-1.5
2,868,635	-				-0.2
2,868,693	+				-0.1
2,868,693	+				-0.2
2,868,693	+				+2.4
2,868,693	+				+0.6
2,868,694	-				-0.1
2,868,837	+		PFLU_RS12695	0.16	-0.8
2,868,873	+		PFLU_RS12695	0.17	+0.6
2,868,874	-		PFLU_RS12695	0.17	+0.1
2,869,093	-		PFLU_RS12695	0.26	-0.4
2,869,093	-		PFLU_RS12695	0.26	-0.0
2,869,197	+		PFLU_RS12695	0.30	+1.2
2,869,281	+		PFLU_RS12695	0.33	-0.3
2,869,281	+		PFLU_RS12695	0.33	-1.0
2,869,282	-		PFLU_RS12695	0.33	+0.6
2,869,347	+		PFLU_RS12695	0.36	+0.7
2,869,347	+		PFLU_RS12695	0.36	+1.0
2,869,347	+		PFLU_RS12695	0.36	-0.6
2,869,347	+		PFLU_RS12695	0.36	+1.6
2,869,347	+		PFLU_RS12695	0.36	+0.4
2,869,348	-		PFLU_RS12695	0.36	-0.5
2,869,348	-		PFLU_RS12695	0.36	-0.8
2,869,348	-		PFLU_RS12695	0.36	+1.4
2,869,348	-		PFLU_RS12695	0.36	-0.1
2,869,393	+		PFLU_RS12695	0.38	+0.1
2,869,393	+		PFLU_RS12695	0.38	-0.6
2,869,393	+		PFLU_RS12695	0.38	+0.9
2,869,394	-		PFLU_RS12695	0.38	+0.6
2,869,394	-		PFLU_RS12695	0.38	-0.7
2,869,544	+		PFLU_RS12695	0.44	-0.1
2,869,545	-		PFLU_RS12695	0.44	+0.3
2,869,579	-		PFLU_RS12695	0.45	-1.1
2,869,617	+		PFLU_RS12695	0.47	-1.4
2,869,617	+		PFLU_RS12695	0.47	+1.3
2,869,618	-		PFLU_RS12695	0.47	+1.8
2,869,618	-		PFLU_RS12695	0.47	+0.1
2,869,618	-		PFLU_RS12695	0.47	+1.1
2,869,618	-		PFLU_RS12695	0.47	-0.2
2,869,620	+		PFLU_RS12695	0.47	+2.2
2,869,620	+		PFLU_RS12695	0.47	+1.0
2,869,620	+		PFLU_RS12695	0.47	-0.7
2,869,620	+		PFLU_RS12695	0.47	-2.0
2,869,620	+		PFLU_RS12695	0.47	-0.3
2,869,620	+		PFLU_RS12695	0.47	+1.7
2,869,621	-		PFLU_RS12695	0.47	-1.4
2,869,621	-		PFLU_RS12695	0.47	-1.0
2,869,621	-		PFLU_RS12695	0.47	+0.3
2,869,621	-		PFLU_RS12695	0.47	-0.6
2,869,621	-		PFLU_RS12695	0.47	+0.6
2,869,621	-		PFLU_RS12695	0.47	+0.2
2,869,687	-		PFLU_RS12695	0.50	+0.5
2,869,707	+		PFLU_RS12695	0.50	+0.3
2,869,720	-		PFLU_RS12695	0.51	-0.4
2,869,720	-		PFLU_RS12695	0.51	-0.6
2,869,720	-		PFLU_RS12695	0.51	+2.2
2,869,728	+		PFLU_RS12695	0.51	+0.2
2,869,728	+		PFLU_RS12695	0.51	+0.3
2,869,728	+		PFLU_RS12695	0.51	-2.6
2,869,728	+		PFLU_RS12695	0.51	-1.0
2,869,728	+		PFLU_RS12695	0.51	-0.3
2,869,729	-		PFLU_RS12695	0.51	-0.5
2,869,729	-		PFLU_RS12695	0.51	-0.4
2,869,729	-		PFLU_RS12695	0.51	+0.4
2,869,729	-		PFLU_RS12695	0.51	+0.9
2,869,794	+		PFLU_RS12695	0.54	+0.1
2,869,794	+		PFLU_RS12695	0.54	+1.3
2,869,794	+		PFLU_RS12695	0.54	+0.1
2,869,794	+		PFLU_RS12695	0.54	+2.0
2,869,794	+		PFLU_RS12695	0.54	-0.3
2,869,794	+		PFLU_RS12695	0.54	-0.4
2,869,795	-		PFLU_RS12695	0.54	+1.9
2,869,795	-		PFLU_RS12695	0.54	+0.6
2,869,795	-		PFLU_RS12695	0.54	-0.4
2,869,795	-		PFLU_RS12695	0.54	-0.1
2,869,795	-		PFLU_RS12695	0.54	+0.8
2,869,795	-		PFLU_RS12695	0.54	-1.7
2,869,912	-		PFLU_RS12695	0.59	-0.3
2,869,934	+		PFLU_RS12695	0.59	-0.4
2,869,951	-		PFLU_RS12695	0.60	-0.1
2,869,977	+		PFLU_RS12695	0.61	+0.6
2,869,977	+		PFLU_RS12695	0.61	+0.6
2,869,978	-		PFLU_RS12695	0.61	-0.2
2,869,978	-		PFLU_RS12695	0.61	-0.5
2,870,019	+		PFLU_RS12695	0.63	-1.0
2,870,019	+		PFLU_RS12695	0.63	-0.8
2,870,020	-		PFLU_RS12695	0.63	+0.9
2,870,020	-		PFLU_RS12695	0.63	-1.7
2,870,020	-		PFLU_RS12695	0.63	+0.3
2,870,020	-		PFLU_RS12695	0.63	-0.0
2,870,074	-		PFLU_RS12695	0.65	+0.6
2,870,179	-		PFLU_RS12695	0.69	-1.6
2,870,179	-		PFLU_RS12695	0.69	-0.8
2,870,205	+		PFLU_RS12695	0.70	-0.7
2,870,214	+		PFLU_RS12695	0.71	+0.2
2,870,290	-		PFLU_RS12695	0.74	-2.2
2,870,307	+		PFLU_RS12695	0.74	-0.0
2,870,333	+		PFLU_RS12695	0.75	-0.6
2,870,345	+		PFLU_RS12695	0.76	+0.1
2,870,345	+		PFLU_RS12695	0.76	+1.3
2,870,345	+		PFLU_RS12695	0.76	-1.4
2,870,345	+		PFLU_RS12695	0.76	+0.3
2,870,508	+		PFLU_RS12695	0.82	+0.5
2,870,508	+		PFLU_RS12695	0.82	+0.3
2,870,508	+		PFLU_RS12695	0.82	+0.3
2,870,508	+		PFLU_RS12695	0.82	-1.2
2,870,508	+		PFLU_RS12695	0.82	+0.3
2,870,509	-		PFLU_RS12695	0.82	+0.6
2,870,509	-		PFLU_RS12695	0.82	-0.6
2,870,509	-		PFLU_RS12695	0.82	-0.5
2,870,514	+		PFLU_RS12695	0.83	+0.7
2,870,515	-		PFLU_RS12695	0.83	+1.1
2,870,515	-		PFLU_RS12695	0.83	+1.2
2,870,515	-		PFLU_RS12695	0.83	-0.8
2,870,582	-		PFLU_RS12695	0.85	+0.2
2,870,616	+		PFLU_RS12695	0.87	+1.3
2,870,616	+		PFLU_RS12695	0.87	-0.2
2,870,617	-		PFLU_RS12695	0.87	+1.5
2,870,617	-		PFLU_RS12695	0.87	-0.3
2,870,655	+		PFLU_RS12695	0.88	+0.6
2,870,655	+		PFLU_RS12695	0.88	-2.0
2,870,656	-		PFLU_RS12695	0.88	-0.3
2,870,656	-		PFLU_RS12695	0.88	-1.7
2,870,656	-		PFLU_RS12695	0.88	+0.1
2,870,709	+				-0.7
2,870,710	-				+0.6
2,870,710	-				-0.1
2,870,760	+				+1.5
2,870,760	+				+0.2
2,870,761	-				+0.4
2,870,761	-				-0.1
2,870,761	-				-1.4
2,870,763	-				-0.2
2,870,763	-				-0.5
2,870,787	+				+3.8
2,870,787	+				-1.2
2,870,788	-				+0.6
2,870,858	+				-0.6
2,870,859	-				+0.2
2,870,865	+				+1.1
2,870,865	+				+1.2
2,870,865	+				-0.3
2,870,866	-				-0.2
2,870,866	-				-0.1
2,870,866	-				+1.0
2,870,866	-				-0.0
2,870,866	-				-1.5
2,870,880	+				-1.7
2,870,880	+				+1.0
2,870,880	+				-0.3
2,870,880	+				-0.5
2,870,880	+				+0.4
2,870,881	-				-1.0
2,870,881	-				+0.6
2,870,881	-				+0.1
2,870,881	-				-0.5
2,870,881	-				-0.0
2,870,902	-				-0.2
2,870,937	+				+0.6
2,870,938	-				-0.1
2,870,938	-				-0.7
2,870,938	-				-0.4
2,870,938	-				+0.4
2,870,938	-				+0.9
2,870,961	-				-0.5
2,870,961	-				+1.3
2,870,971	-				-0.6
2,870,971	-				-0.4
2,870,984	+				-0.4
2,870,985	-				-0.2
2,871,130	+		PFLU_RS12700	0.27	+0.2
2,871,130	+		PFLU_RS12700	0.27	-1.2
2,871,130	+		PFLU_RS12700	0.27	+0.2
2,871,130	+		PFLU_RS12700	0.27	-0.7
2,871,130	+		PFLU_RS12700	0.27	-0.3
2,871,130	+		PFLU_RS12700	0.27	-0.5
2,871,130	+		PFLU_RS12700	0.27	-0.6
2,871,130	+		PFLU_RS12700	0.27	-0.0
2,871,130	+		PFLU_RS12700	0.27	+0.9
2,871,130	+		PFLU_RS12700	0.27	-1.1
2,871,130	+		PFLU_RS12700	0.27	+0.8
2,871,130	+		PFLU_RS12700	0.27	-1.6
2,871,130	+		PFLU_RS12700	0.27	-0.3
2,871,130	+		PFLU_RS12700	0.27	+0.3
2,871,130	+		PFLU_RS12700	0.27	-1.1
2,871,130	+		PFLU_RS12700	0.27	-0.4
2,871,130	+		PFLU_RS12700	0.27	+0.6
2,871,130	+		PFLU_RS12700	0.27	+0.6
2,871,130	+		PFLU_RS12700	0.27	+0.3
2,871,130	+		PFLU_RS12700	0.27	+0.1
2,871,130	+		PFLU_RS12700	0.27	-1.4
2,871,130	+		PFLU_RS12700	0.27	-0.0
2,871,130	+		PFLU_RS12700	0.27	+0.2
2,871,130	+		PFLU_RS12700	0.27	-0.1
2,871,130	+		PFLU_RS12700	0.27	-1.0
2,871,130	+		PFLU_RS12700	0.27	-1.7
2,871,130	+		PFLU_RS12700	0.27	-0.7
2,871,131	-		PFLU_RS12700	0.28	-0.4
2,871,131	-		PFLU_RS12700	0.28	+0.2
2,871,131	-		PFLU_RS12700	0.28	-0.3
2,871,131	-		PFLU_RS12700	0.28	+0.2
2,871,131	-		PFLU_RS12700	0.28	+0.6
2,871,131	-		PFLU_RS12700	0.28	+1.2
2,871,131	-		PFLU_RS12700	0.28	-0.1
2,871,131	-		PFLU_RS12700	0.28	+0.8
2,871,131	-		PFLU_RS12700	0.28	+2.6
2,871,131	-		PFLU_RS12700	0.28	+1.0
2,871,131	-		PFLU_RS12700	0.28	+0.9
2,871,131	-		PFLU_RS12700	0.28	+0.6
2,871,131	-		PFLU_RS12700	0.28	+0.3
2,871,131	-		PFLU_RS12700	0.28	-0.4
2,871,131	-		PFLU_RS12700	0.28	-0.6
2,871,131	-		PFLU_RS12700	0.28	+0.1
2,871,131	-		PFLU_RS12700	0.28	+1.2
2,871,131	-		PFLU_RS12700	0.28	-0.7
2,871,131	-		PFLU_RS12700	0.28	-0.7
2,871,131	-		PFLU_RS12700	0.28	+1.0
2,871,131	-		PFLU_RS12700	0.28	-0.5
2,871,131	-		PFLU_RS12700	0.28	-2.1
2,871,131	-		PFLU_RS12700	0.28	-0.4
2,871,199	+		PFLU_RS12700	0.48	+1.2
2,871,200	-		PFLU_RS12700	0.48	-0.6
2,871,283	+		PFLU_RS12700	0.74	+0.1
2,871,284	-		PFLU_RS12700	0.74	-0.2
2,871,284	-		PFLU_RS12700	0.74	-1.0
2,871,331	+		PFLU_RS12700	0.88	-0.7
2,871,331	+		PFLU_RS12700	0.88	+0.0
2,871,331	+		PFLU_RS12700	0.88	-0.1
2,871,332	-		PFLU_RS12700	0.88	+0.4
2,871,332	-		PFLU_RS12700	0.88	+0.8
2,871,349	+				-1.1
2,871,350	-				+2.2
2,871,351	+				+0.4
2,871,351	+				+0.8
2,871,351	+				+0.6
2,871,352	-				-0.1
2,871,363	+				-0.4
2,871,363	+				-0.0
2,871,363	+				-0.4
2,871,363	+				+0.6
2,871,363	+				-1.6
2,871,364	-				-0.1
2,871,364	-				-1.1
2,871,375	+				+0.2
2,871,376	-				-0.4
2,871,411	+				+0.3
2,871,430	+				+0.1
2,871,456	+				-0.7
2,871,456	+				-0.6
2,871,456	+				-0.6
2,871,457	-				+0.6
2,871,457	-				-0.2
2,871,555	-		PFLU_RS12705	0.20	+0.4
2,871,611	-		PFLU_RS12705	0.26	-1.7