Experiment: D-Trehalose 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01100 and PFLU_RS30340 overlap by 20 nucleotides PFLU_RS30340 and PFLU_RS01110 are separated by 318 nucleotides PFLU_RS01110 and PFLU_RS31375 are separated by 820 nucleotides
PFLU_RS01100: PFLU_RS01100 - recombinase family protein, at 243,384 to 243,950
_RS01100
PFLU_RS30340: PFLU_RS30340 - hypothetical protein, at 243,931 to 244,169
_RS30340
PFLU_RS01110: PFLU_RS01110 - AAA family ATPase, at 244,488 to 245,112
_RS01110
PFLU_RS31375: PFLU_RS31375 - hypothetical protein, at 245,933 to 246,113
_RS31375
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.511 kb on + strand, within PFLU_RS01100 at 243.512 kb on - strand, within PFLU_RS01100 at 243.539 kb on - strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.551 kb on + strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.552 kb on - strand, within PFLU_RS01100 at 243.556 kb on + strand, within PFLU_RS01100 at 243.557 kb on - strand, within PFLU_RS01100 at 243.557 kb on - strand, within PFLU_RS01100 at 243.557 kb on - strand, within PFLU_RS01100 at 243.557 kb on - strand, within PFLU_RS01100 at 243.557 kb on - strand, within PFLU_RS01100 at 243.574 kb on - strand, within PFLU_RS01100 at 243.685 kb on + strand, within PFLU_RS01100 at 243.781 kb on - strand, within PFLU_RS01100 at 243.781 kb on - strand, within PFLU_RS01100 at 243.792 kb on + strand, within PFLU_RS01100 at 243.838 kb on - strand, within PFLU_RS01100 at 243.903 kb on + strand at 243.903 kb on + strand at 243.903 kb on + strand at 243.903 kb on + strand at 243.903 kb on + strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.904 kb on - strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.909 kb on + strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.910 kb on - strand at 243.948 kb on + strand at 243.949 kb on - strand at 243.949 kb on - strand at 244.026 kb on - strand, within PFLU_RS30340 at 244.094 kb on + strand, within PFLU_RS30340 at 244.100 kb on + strand, within PFLU_RS30340 at 244.101 kb on - strand, within PFLU_RS30340 at 244.101 kb on - strand, within PFLU_RS30340 at 244.101 kb on - strand, within PFLU_RS30340 at 244.133 kb on + strand, within PFLU_RS30340 at 244.134 kb on - strand, within PFLU_RS30340 at 244.134 kb on - strand, within PFLU_RS30340 at 244.134 kb on - strand, within PFLU_RS30340 at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.172 kb on + strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.173 kb on - strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.252 kb on + strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.253 kb on - strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.279 kb on + strand at 244.280 kb on - strand at 244.280 kb on - strand at 244.280 kb on - strand at 244.280 kb on - strand at 244.280 kb on - strand at 244.349 kb on + strand at 244.349 kb on + strand at 244.350 kb on - strand at 244.350 kb on - strand at 244.350 kb on - strand at 244.350 kb on - strand at 244.391 kb on - strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.405 kb on + strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.406 kb on - strand at 244.493 kb on + strand at 244.493 kb on + strand at 244.493 kb on + strand at 244.493 kb on + strand at 244.493 kb on + strand at 244.493 kb on + strand at 244.494 kb on - strand at 244.494 kb on - strand at 244.494 kb on - strand at 244.642 kb on + strand, within PFLU_RS01110 at 244.694 kb on - strand, within PFLU_RS01110 at 244.831 kb on - strand, within PFLU_RS01110 at 244.836 kb on - strand, within PFLU_RS01110 at 244.836 kb on - strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.008 kb on + strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.009 kb on - strand, within PFLU_RS01110 at 245.013 kb on + strand, within PFLU_RS01110 at 245.088 kb on - strand at 245.088 kb on - strand at 245.265 kb on + strand at 245.266 kb on - strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.329 kb on + strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.330 kb on - strand at 245.333 kb on + strand at 245.334 kb on - strand at 245.334 kb on - strand at 245.353 kb on + strand at 245.361 kb on - strand at 245.361 kb on - strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.407 kb on - strand at 245.432 kb on + strand at 245.447 kb on + strand at 245.480 kb on + strand at 245.481 kb on - strand at 245.526 kb on - strand at 245.536 kb on + strand at 245.537 kb on - strand at 245.538 kb on + strand at 245.542 kb on + strand at 245.593 kb on + strand at 245.593 kb on + strand at 245.593 kb on + strand at 245.618 kb on - strand at 245.623 kb on + strand at 245.623 kb on + strand at 245.623 kb on + strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.624 kb on - strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.626 kb on + strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.627 kb on - strand at 245.634 kb on + strand at 245.635 kb on - strand at 245.672 kb on + strand at 245.673 kb on - strand at 245.729 kb on - strand at 245.872 kb on - strand at 245.872 kb on - strand at 245.918 kb on - strand at 245.919 kb on + strand at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.965 kb on - strand, within PFLU_RS31375 at 245.979 kb on + strand, within PFLU_RS31375 at 245.980 kb on - strand, within PFLU_RS31375 at 246.045 kb on + strand, within PFLU_RS31375 at 246.045 kb on + strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.046 kb on - strand, within PFLU_RS31375 at 246.048 kb on - strand, within PFLU_RS31375 at 246.097 kb on + strand at 246.097 kb on + strand at 246.097 kb on + strand at 246.098 kb on - strand at 246.098 kb on - strand at 246.111 kb on + strand at 246.111 kb on + strand at 246.111 kb on + strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand at 246.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C) remove 243,511 + PFLU_RS01100 0.22 +0.5 243,512 - PFLU_RS01100 0.23 +1.1 243,539 - PFLU_RS01100 0.27 +0.4 243,551 + PFLU_RS01100 0.29 -0.4 243,551 + PFLU_RS01100 0.29 +0.2 243,551 + PFLU_RS01100 0.29 +0.3 243,551 + PFLU_RS01100 0.29 -0.3 243,551 + PFLU_RS01100 0.29 +0.4 243,551 + PFLU_RS01100 0.29 +0.3 243,551 + PFLU_RS01100 0.29 -0.5 243,551 + PFLU_RS01100 0.29 +0.2 243,551 + PFLU_RS01100 0.29 -1.3 243,551 + PFLU_RS01100 0.29 +0.2 243,551 + PFLU_RS01100 0.29 -1.4 243,551 + PFLU_RS01100 0.29 -0.7 243,552 - PFLU_RS01100 0.30 -1.5 243,552 - PFLU_RS01100 0.30 -0.8 243,552 - PFLU_RS01100 0.30 -0.0 243,552 - PFLU_RS01100 0.30 -0.1 243,552 - PFLU_RS01100 0.30 -1.8 243,552 - PFLU_RS01100 0.30 +0.2 243,552 - PFLU_RS01100 0.30 -0.8 243,552 - PFLU_RS01100 0.30 +0.4 243,552 - PFLU_RS01100 0.30 -0.1 243,552 - PFLU_RS01100 0.30 +1.2 243,552 - PFLU_RS01100 0.30 -0.9 243,552 - PFLU_RS01100 0.30 +0.3 243,556 + PFLU_RS01100 0.30 -0.5 243,557 - PFLU_RS01100 0.31 +0.1 243,557 - PFLU_RS01100 0.31 +0.4 243,557 - PFLU_RS01100 0.31 +0.8 243,557 - PFLU_RS01100 0.31 -0.3 243,557 - PFLU_RS01100 0.31 +0.1 243,574 - PFLU_RS01100 0.34 -1.1 243,685 + PFLU_RS01100 0.53 -0.6 243,781 - PFLU_RS01100 0.70 -0.7 243,781 - PFLU_RS01100 0.70 -0.5 243,792 + PFLU_RS01100 0.72 +0.3 243,838 - PFLU_RS01100 0.80 -0.2 243,903 + -0.2 243,903 + +0.9 243,903 + -1.0 243,903 + -0.4 243,903 + +0.1 243,904 - -0.1 243,904 - +1.0 243,904 - +0.1 243,904 - -0.9 243,904 - -0.1 243,904 - +0.4 243,904 - -1.5 243,904 - +0.2 243,909 + +0.4 243,909 + -0.3 243,909 + +0.9 243,909 + -1.0 243,909 + +0.0 243,909 + -1.1 243,909 + +0.7 243,909 + -0.7 243,909 + +2.0 243,909 + +0.1 243,909 + -0.2 243,909 + -1.4 243,909 + -0.9 243,910 - +0.3 243,910 - +0.7 243,910 - -0.7 243,910 - -0.5 243,910 - +1.8 243,910 - +0.2 243,910 - -0.1 243,910 - -1.1 243,910 - +0.4 243,910 - -0.9 243,910 - +1.5 243,948 + +0.5 243,949 - +0.9 243,949 - -0.4 244,026 - PFLU_RS30340 0.40 -0.5 244,094 + PFLU_RS30340 0.68 -1.1 244,100 + PFLU_RS30340 0.71 -0.9 244,101 - PFLU_RS30340 0.71 -2.0 244,101 - PFLU_RS30340 0.71 -1.0 244,101 - PFLU_RS30340 0.71 -0.0 244,133 + PFLU_RS30340 0.85 -0.0 244,134 - PFLU_RS30340 0.85 -0.4 244,134 - PFLU_RS30340 0.85 +0.6 244,134 - PFLU_RS30340 0.85 -0.4 244,172 + +0.5 244,172 + -0.3 244,172 + +1.4 244,172 + -1.0 244,172 + -0.7 244,172 + +0.6 244,172 + +0.7 244,172 + -0.6 244,172 + -1.3 244,172 + +0.6 244,172 + -0.1 244,173 - +0.8 244,173 - -1.2 244,173 - -0.2 244,173 - -2.4 244,173 - -0.7 244,173 - -0.6 244,173 - -0.3 244,173 - -1.0 244,173 - +0.4 244,252 + -2.6 244,252 + +1.3 244,252 + -0.5 244,252 + -0.8 244,252 + -1.3 244,252 + +0.1 244,252 + +0.5 244,252 + +0.5 244,252 + -0.3 244,252 + -1.7 244,252 + +1.2 244,252 + +0.8 244,252 + -0.4 244,252 + -0.4 244,252 + -1.0 244,252 + +0.4 244,252 + +0.5 244,252 + -0.6 244,252 + -1.1 244,252 + +0.4 244,252 + -0.8 244,252 + -0.7 244,252 + -0.7 244,253 - -1.4 244,253 - -1.2 244,253 - -1.6 244,253 - -2.4 244,253 - -0.5 244,253 - -0.2 244,253 - -0.1 244,253 - +0.6 244,279 + -1.4 244,279 + +0.4 244,279 + +0.3 244,279 + -0.2 244,279 + +1.0 244,279 + +0.4 244,279 + -0.9 244,279 + -0.3 244,279 + +0.1 244,280 - +0.2 244,280 - -0.9 244,280 - +0.0 244,280 - +0.4 244,280 - -0.3 244,349 + +0.2 244,349 + +0.1 244,350 - -2.4 244,350 - -0.2 244,350 - +0.0 244,350 - -0.5 244,391 - -0.9 244,405 + +0.2 244,405 + +1.0 244,405 + +0.3 244,405 + +0.4 244,405 + -0.3 244,405 + -0.9 244,405 + +0.0 244,405 + +0.6 244,405 + +1.1 244,405 + +0.3 244,405 + +0.8 244,405 + +1.4 244,405 + +0.7 244,405 + -0.6 244,405 + +0.3 244,405 + +0.5 244,405 + +0.1 244,406 - +0.6 244,406 - +0.2 244,406 - -0.4 244,406 - -1.4 244,406 - +1.1 244,406 - -0.6 244,406 - +1.0 244,406 - -0.1 244,406 - -0.5 244,406 - +1.0 244,406 - +0.5 244,406 - +0.4 244,406 - +0.7 244,406 - -0.4 244,406 - -1.7 244,493 + -0.2 244,493 + -1.2 244,493 + -1.4 244,493 + -1.2 244,493 + -0.0 244,493 + +2.0 244,494 - +0.6 244,494 - -0.5 244,494 - -0.2 244,642 + PFLU_RS01110 0.25 +0.6 244,694 - PFLU_RS01110 0.33 -0.0 244,831 - PFLU_RS01110 0.55 +0.4 244,836 - PFLU_RS01110 0.56 -0.8 244,836 - PFLU_RS01110 0.56 -0.1 245,008 + PFLU_RS01110 0.83 -0.6 245,008 + PFLU_RS01110 0.83 -0.1 245,008 + PFLU_RS01110 0.83 -0.6 245,008 + PFLU_RS01110 0.83 -0.6 245,008 + PFLU_RS01110 0.83 +0.2 245,008 + PFLU_RS01110 0.83 -0.3 245,009 - PFLU_RS01110 0.83 -0.0 245,009 - PFLU_RS01110 0.83 -0.1 245,009 - PFLU_RS01110 0.83 +0.8 245,009 - PFLU_RS01110 0.83 -0.1 245,013 + PFLU_RS01110 0.84 +0.5 245,088 - +1.4 245,088 - -0.9 245,265 + -0.3 245,266 - -0.1 245,329 + +2.4 245,329 + +0.6 245,329 + -1.3 245,329 + +0.1 245,329 + -1.6 245,330 - +0.0 245,330 - -2.3 245,330 - +0.9 245,330 - -0.0 245,333 + +0.4 245,334 - +0.2 245,334 - -0.3 245,353 + -0.2 245,361 - +2.0 245,361 - -0.2 245,367 + -0.1 245,367 + -0.8 245,367 + -1.1 245,407 - +0.3 245,432 + +0.8 245,447 + +0.4 245,480 + +0.3 245,481 - -0.5 245,526 - -0.9 245,536 + -0.2 245,537 - -0.4 245,538 + +0.8 245,542 + +0.6 245,593 + -0.2 245,593 + -0.5 245,593 + +0.7 245,618 - +0.9 245,623 + +0.7 245,623 + +0.9 245,623 + +1.2 245,624 - +0.3 245,624 - +0.6 245,624 - +0.2 245,624 - -1.3 245,624 - -2.1 245,624 - -0.0 245,624 - -0.6 245,626 + -0.7 245,626 + -0.7 245,626 + +0.4 245,626 + -0.3 245,626 + -0.4 245,626 + +0.8 245,626 + -0.1 245,626 + -0.7 245,626 + +0.4 245,626 + -0.7 245,626 + -1.0 245,626 + +0.1 245,626 + +1.2 245,627 - +1.8 245,627 - +0.2 245,627 - +0.3 245,627 - -0.5 245,627 - -0.3 245,627 - +0.3 245,627 - +0.7 245,627 - +0.1 245,627 - -1.4 245,627 - -0.4 245,627 - -0.9 245,627 - +1.0 245,634 + -1.5 245,635 - -0.1 245,672 + +0.2 245,673 - +1.2 245,729 - -0.1 245,872 - -0.3 245,872 - +0.2 245,918 - +0.1 245,919 + +0.0 245,965 - PFLU_RS31375 0.18 +0.3 245,965 - PFLU_RS31375 0.18 -0.2 245,965 - PFLU_RS31375 0.18 +0.7 245,965 - PFLU_RS31375 0.18 +0.1 245,979 + PFLU_RS31375 0.25 -1.8 245,980 - PFLU_RS31375 0.26 -1.0 246,045 + PFLU_RS31375 0.62 +0.8 246,045 + PFLU_RS31375 0.62 +0.4 246,046 - PFLU_RS31375 0.62 +0.4 246,046 - PFLU_RS31375 0.62 +0.8 246,046 - PFLU_RS31375 0.62 -0.3 246,046 - PFLU_RS31375 0.62 +1.0 246,046 - PFLU_RS31375 0.62 -0.2 246,046 - PFLU_RS31375 0.62 +0.0 246,046 - PFLU_RS31375 0.62 -0.2 246,048 - PFLU_RS31375 0.64 -1.8 246,097 + -0.7 246,097 + -0.8 246,097 + -0.5 246,098 - +0.3 246,098 - +0.5 246,111 + -2.1 246,111 + -0.7 246,111 + -1.2 246,112 - +0.2 246,112 - +0.6 246,112 - +1.0 246,112 - +0.7 246,112 - +0.3 246,112 - -0.2
Or see this region's nucleotide sequence