Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31415

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,161,303	-		PFLU_RS05215	0.52	+0.4
1,161,337	+		PFLU_RS05215	0.55	+0.5
1,161,337	+		PFLU_RS05215	0.55	+0.8
1,161,338	-		PFLU_RS05215	0.55	-0.3
1,161,338	-		PFLU_RS05215	0.55	-0.3
1,161,346	+		PFLU_RS05215	0.56	+0.2
1,161,346	+		PFLU_RS05215	0.56	+0.4
1,161,346	+		PFLU_RS05215	0.56	+1.4
1,161,346	+		PFLU_RS05215	0.56	+0.2
1,161,346	+		PFLU_RS05215	0.56	+0.4
1,161,347	-		PFLU_RS05215	0.56	+0.8
1,161,347	-		PFLU_RS05215	0.56	+1.4
1,161,347	-		PFLU_RS05215	0.56	+0.0
1,161,347	-		PFLU_RS05215	0.56	-0.0
1,161,466	+		PFLU_RS05215	0.68	+0.6
1,161,466	+		PFLU_RS05215	0.68	-0.0
1,161,466	+		PFLU_RS05215	0.68	+1.7
1,161,466	+		PFLU_RS05215	0.68	+0.3
1,161,466	+		PFLU_RS05215	0.68	-0.5
1,161,467	-		PFLU_RS05215	0.68	-2.0
1,161,467	-		PFLU_RS05215	0.68	+0.9
1,161,467	-		PFLU_RS05215	0.68	-0.2
1,161,467	-		PFLU_RS05215	0.68	+0.4
1,161,499	+		PFLU_RS05215	0.71	-1.2
1,161,499	+		PFLU_RS05215	0.71	+0.6
1,161,500	-		PFLU_RS05215	0.71	-0.1
1,161,532	+		PFLU_RS05215	0.75	+1.5
1,161,532	+		PFLU_RS05215	0.75	-0.0
1,161,532	+		PFLU_RS05215	0.75	-1.3
1,161,532	+		PFLU_RS05215	0.75	+0.2
1,161,532	+		PFLU_RS05215	0.75	-0.6
1,161,532	+		PFLU_RS05215	0.75	+0.1
1,161,532	+		PFLU_RS05215	0.75	+0.1
1,161,532	+		PFLU_RS05215	0.75	-0.1
1,161,532	+		PFLU_RS05215	0.75	-0.7
1,161,532	+		PFLU_RS05215	0.75	+0.0
1,161,532	+		PFLU_RS05215	0.75	+1.4
1,161,532	+		PFLU_RS05215	0.75	-1.1
1,161,532	+		PFLU_RS05215	0.75	-0.8
1,161,533	-		PFLU_RS05215	0.75	-0.8
1,161,533	-		PFLU_RS05215	0.75	-0.5
1,161,533	-		PFLU_RS05215	0.75	+0.0
1,161,533	-		PFLU_RS05215	0.75	+0.2
1,161,714	-				-0.6
1,161,902	+				+0.0
1,161,902	+				+0.2
1,161,902	+				-0.6
1,161,902	+				-0.6
1,161,902	+				+0.4
1,161,902	+				-1.0
1,161,902	+				-1.2
1,161,902	+				+2.4
1,161,902	+				+0.4
1,161,902	+				-0.0
1,161,902	+				+0.4
1,161,902	+				+1.4
1,161,902	+				+0.2
1,161,902	+				-0.4
1,161,902	+				-0.1
1,161,903	-				-0.2
1,161,903	-				-0.5
1,161,903	-				+2.1
1,161,903	-				+0.5
1,161,903	-				-0.3
1,161,903	-				-2.1
1,161,903	-				+0.0
1,161,903	-				+0.2
1,161,903	-				+0.2
1,161,903	-				-0.2
1,161,903	-				-0.5
1,161,903	-				-0.6
1,161,903	-				-1.0
1,161,913	+				-0.4
1,161,913	+				+0.0
1,161,913	+				+0.2
1,161,914	-				-1.0
1,161,914	-				+1.4
1,161,914	-				-1.6
1,161,922	-				+0.7
1,161,953	+				+0.1
1,161,953	+				-1.2
1,161,953	+				+1.6
1,161,953	+				-0.5
1,161,953	+				+1.4
1,161,953	+				+0.4
1,161,953	+				+0.6
1,161,953	+				-0.6
1,161,953	+				+0.6
1,161,953	+				+0.9
1,161,954	-				-1.2
1,161,954	-				+1.1
1,161,954	-				+0.0
1,161,954	-				-0.1
1,161,954	-				-1.1
1,161,954	-				-0.0
1,161,954	-				-1.6
1,161,954	-				+0.7
1,161,954	-				+2.2
1,161,954	-				+0.4
1,161,954	-				-1.2
1,161,954	-				-0.8
1,161,954	-				-1.1
1,162,007	-				-0.5
1,162,007	-				-0.4
1,162,021	-				-1.0
1,162,021	-				-0.4
1,162,021	-				+0.7
1,162,021	-				+1.0
1,162,036	-				-2.2
1,162,036	-				+0.7
1,162,036	-				-2.5
1,162,036	-				+0.2
1,162,036	-				-0.9
1,162,036	-				-1.3
1,162,036	-				-0.7
1,162,036	-				-0.3
1,162,036	-				-0.0
1,162,036	-				-0.6
1,162,149	+		PFLU_RS31415	0.65	+0.4
1,162,155	+		PFLU_RS31415	0.68	-1.3
1,162,171	+		PFLU_RS31415	0.76	+1.4
1,162,171	+		PFLU_RS31415	0.76	-1.3
1,162,171	+		PFLU_RS31415	0.76	+0.5
1,162,171	+		PFLU_RS31415	0.76	-0.7
1,162,171	+		PFLU_RS31415	0.76	+0.3
1,162,172	-		PFLU_RS31415	0.77	+0.4
1,162,185	+		PFLU_RS31415	0.83	+1.2
1,162,185	+		PFLU_RS31415	0.83	+2.4
1,162,185	+		PFLU_RS31415	0.83	+0.0
1,162,185	+		PFLU_RS31415	0.83	+0.9
1,162,186	-		PFLU_RS31415	0.84	-0.4
1,162,186	-		PFLU_RS31415	0.84	+0.4
1,162,206	+				-1.0
1,162,207	-				+1.0
1,162,207	-				-2.3
1,162,207	-				-1.7
1,162,222	+				+0.4
1,162,223	-				+1.4
1,162,223	-				-0.1
1,162,223	-				-0.4