Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30865

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,707,374	-		PFLU_RS16345	0.59	-0.5
3,707,374	-		PFLU_RS16345	0.59	+3.6
3,707,374	-		PFLU_RS16345	0.59	+1.8
3,707,374	-		PFLU_RS16345	0.59	-0.1
3,707,414	+		PFLU_RS16345	0.61	-0.4
3,707,414	+		PFLU_RS16345	0.61	+0.8
3,707,415	-		PFLU_RS16345	0.61	+0.3
3,707,415	-		PFLU_RS16345	0.61	-0.6
3,707,415	-		PFLU_RS16345	0.61	+0.2
3,707,458	-		PFLU_RS16345	0.64	-0.7
3,707,458	-		PFLU_RS16345	0.64	-1.2
3,707,472	-		PFLU_RS16345	0.65	+0.8
3,707,472	-		PFLU_RS16345	0.65	-0.4
3,707,487	-		PFLU_RS16345	0.66	-0.1
3,707,511	+		PFLU_RS16345	0.67	-0.9
3,707,511	+		PFLU_RS16345	0.67	+0.6
3,707,528	+		PFLU_RS16345	0.68	-1.1
3,707,528	+		PFLU_RS16345	0.68	-1.7
3,707,528	+		PFLU_RS16345	0.68	-1.9
3,707,532	+		PFLU_RS16345	0.69	-2.5
3,707,532	+		PFLU_RS16345	0.69	-0.5
3,707,532	+		PFLU_RS16345	0.69	-0.0
3,707,532	+		PFLU_RS16345	0.69	+1.3
3,707,532	+		PFLU_RS16345	0.69	+0.2
3,707,532	+		PFLU_RS16345	0.69	+0.8
3,707,532	+		PFLU_RS16345	0.69	-0.4
3,707,532	+		PFLU_RS16345	0.69	+0.5
3,707,532	+		PFLU_RS16345	0.69	-0.2
3,707,533	-		PFLU_RS16345	0.69	-0.7
3,707,533	-		PFLU_RS16345	0.69	-0.2
3,707,533	-		PFLU_RS16345	0.69	+0.1
3,707,533	-		PFLU_RS16345	0.69	-0.6
3,707,533	-		PFLU_RS16345	0.69	-0.2
3,707,533	-		PFLU_RS16345	0.69	+0.8
3,707,533	-		PFLU_RS16345	0.69	+0.8
3,707,556	+		PFLU_RS16345	0.70	+1.8
3,707,556	+		PFLU_RS16345	0.70	-0.1
3,707,565	+		PFLU_RS16345	0.71	-0.4
3,707,565	+		PFLU_RS16345	0.71	+1.4
3,707,565	+		PFLU_RS16345	0.71	-0.5
3,707,566	-		PFLU_RS16345	0.71	-0.0
3,707,566	-		PFLU_RS16345	0.71	-0.3
3,707,566	-		PFLU_RS16345	0.71	-0.1
3,707,566	-		PFLU_RS16345	0.71	+0.4
3,707,566	-		PFLU_RS16345	0.71	-1.5
3,707,566	-		PFLU_RS16345	0.71	-0.1
3,707,595	-		PFLU_RS16345	0.73	+0.8
3,707,608	+		PFLU_RS16345	0.73	-0.2
3,707,608	+		PFLU_RS16345	0.73	+0.7
3,707,609	-		PFLU_RS16345	0.73	-0.3
3,707,609	-		PFLU_RS16345	0.73	+0.3
3,707,633	+		PFLU_RS16345	0.75	+1.7
3,707,633	+		PFLU_RS16345	0.75	-0.4
3,707,633	+		PFLU_RS16345	0.75	-0.5
3,707,634	-		PFLU_RS16345	0.75	+1.1
3,707,634	-		PFLU_RS16345	0.75	+0.0
3,707,634	-		PFLU_RS16345	0.75	-0.4
3,707,634	-		PFLU_RS16345	0.75	-0.8
3,707,634	-		PFLU_RS16345	0.75	+0.5
3,707,665	+		PFLU_RS16345	0.77	+0.3
3,707,672	+		PFLU_RS16345	0.77	-0.3
3,707,684	+		PFLU_RS16345	0.78	-0.2
3,707,684	+		PFLU_RS16345	0.78	-1.0
3,707,684	+		PFLU_RS16345	0.78	+0.3
3,707,684	+		PFLU_RS16345	0.78	-0.3
3,707,685	-		PFLU_RS16345	0.78	+1.4
3,707,685	-		PFLU_RS16345	0.78	-1.0
3,707,685	-		PFLU_RS16345	0.78	-1.7
3,707,685	-		PFLU_RS16345	0.78	-1.7
3,707,699	-		PFLU_RS16345	0.79	+0.7
3,707,699	-		PFLU_RS16345	0.79	+0.8
3,707,706	+		PFLU_RS16345	0.79	-1.3
3,707,706	+		PFLU_RS16345	0.79	+0.0
3,707,706	+		PFLU_RS16345	0.79	-0.3
3,707,769	-		PFLU_RS16345	0.83	-0.3
3,707,769	-		PFLU_RS16345	0.83	-3.2
3,707,778	+		PFLU_RS16345	0.84	-0.1
3,707,778	+		PFLU_RS16345	0.84	+1.4
3,707,778	+		PFLU_RS16345	0.84	-1.1
3,707,778	+		PFLU_RS16345	0.84	-1.7
3,707,778	+		PFLU_RS16345	0.84	-0.7
3,707,778	+		PFLU_RS16345	0.84	-1.0
3,707,779	-		PFLU_RS16345	0.84	+2.6
3,707,779	-		PFLU_RS16345	0.84	+1.5
3,707,826	+		PFLU_RS16345	0.87	+0.8
3,707,826	+		PFLU_RS16345	0.87	+0.1
3,707,826	+		PFLU_RS16345	0.87	+1.1
3,707,827	-		PFLU_RS16345	0.87	-0.3
3,707,829	-		PFLU_RS16345	0.87	-0.3
3,707,852	+		PFLU_RS16345	0.88	-1.3
3,707,852	+		PFLU_RS16345	0.88	+1.0
3,707,852	+		PFLU_RS16345	0.88	+0.8
3,707,852	+		PFLU_RS16345	0.88	-0.0
3,707,853	-		PFLU_RS16345	0.88	-0.2
3,707,853	-		PFLU_RS16345	0.88	+1.1
3,707,961	-				+0.2
3,708,000	+				+0.3
3,708,000	+				+1.2
3,708,001	-				+1.1
3,708,001	-				-0.4
3,708,001	-				-0.1
3,708,001	-				-0.6
3,708,001	-				+0.4
3,708,001	-				-0.6
3,708,047	+				-0.2
3,708,048	-				-0.7
3,708,048	-				+0.4
3,708,077	+				+0.7
3,708,077	+				-0.2
3,708,084	+				+0.4
3,708,084	+				+0.8
3,708,085	-				-2.0
3,708,085	-				-1.2
3,708,085	-				-0.7
3,708,085	-				-0.7
3,708,085	-				-2.5
3,708,088	+				-0.0
3,708,088	+				-0.2
3,708,089	-				+1.4
3,708,089	-				-0.2
3,708,097	+				+0.4
3,708,097	+				-1.7
3,708,098	-				+1.1
3,708,098	-				-0.3
3,708,099	+				-0.3
3,708,099	+				-1.2
3,708,100	-				+0.8
3,708,101	+				+0.3
3,708,101	+				+0.8
3,708,102	-				+0.0
3,708,110	+				-0.2
3,708,111	-				+0.1
3,708,111	-				-1.0
3,708,111	-				+0.5
3,708,113	-				-0.2
3,708,205	+				-0.9
3,708,205	+				+0.2
3,708,205	+				-1.0
3,708,205	+				+0.7
3,708,206	-				-0.7
3,708,206	-				-0.2
3,708,206	-				+0.3
3,708,206	-				-0.9
3,708,206	-				+0.4
3,708,206	-				-1.7
3,708,240	+				+1.5
3,708,240	+				-1.5
3,708,241	-				+0.1
3,708,251	+				-1.3
3,708,251	+				-0.4
3,708,251	+				+0.5
3,708,251	+				-0.1
3,708,252	-				+0.3
3,708,252	-				-0.7
3,708,252	-				-0.8
3,708,252	-				+0.6
3,708,252	-				+0.4
3,708,252	-				-0.2
3,708,262	+				+1.0
3,708,263	-				-1.3
3,708,371	+		PFLU_RS30865	0.32	+0.0
3,708,385	+		PFLU_RS30865	0.41	-0.2
3,708,386	-		PFLU_RS30865	0.42	-0.4
3,708,387	+		PFLU_RS30865	0.42	+0.5
3,708,387	+		PFLU_RS30865	0.42	+0.5
3,708,387	+		PFLU_RS30865	0.42	+0.1
3,708,388	-		PFLU_RS30865	0.43	+0.6
3,708,388	-		PFLU_RS30865	0.43	-1.7
3,708,425	+		PFLU_RS30865	0.67	+1.2
3,708,425	+		PFLU_RS30865	0.67	+0.1
3,708,426	-		PFLU_RS30865	0.67	+2.0
3,708,426	-		PFLU_RS30865	0.67	+1.1
3,708,546	+				-0.6
3,708,546	+				+0.7
3,708,546	+				+0.5
3,708,547	-				-0.2
3,708,547	-				+1.1
3,708,563	+				+0.0
3,708,603	+				-0.9
3,708,603	+				+0.4
3,708,604	-				-0.4
3,708,621	-				-0.6
3,708,621	-				-0.7
3,708,639	+				+1.6
3,708,640	-				+0.8
3,708,696	-				-0.2
3,708,696	-				-0.5
3,708,848	-				-0.4
3,708,867	-				-0.2
3,708,867	-				-0.5
3,708,867	-				+0.1
3,708,867	-				+2.0
3,708,867	-				-0.5
3,708,867	-				+0.3
3,708,867	-				-2.6
3,708,867	-				+0.4
3,708,867	-				-0.9
3,708,867	-				-3.6
3,708,867	-				-1.0
3,708,867	-				-0.5
3,708,867	-				-0.7
3,708,867	-				+0.8
3,708,867	-				+0.3
3,708,867	-				+1.2
3,708,992	+				+0.8
3,709,022	+				-1.2
3,709,171	+				+0.5
3,709,171	+				+1.1
3,709,171	+				-1.3
3,709,171	+				-0.4
3,709,171	+				-0.0
3,709,172	-				+0.6
3,709,172	-				-0.0
3,709,172	-				+0.4
3,709,172	-				+0.8
3,709,172	-				-0.5
3,709,172	-				-1.0
3,709,220	+				+0.3
3,709,221	-				-0.2
3,709,221	-				-0.4
3,709,221	-				+0.8
3,709,221	-				-0.3
3,709,221	-				+0.5
3,709,221	-				+0.6
3,709,283	+		PFLU_RS16355	0.11	-1.0
3,709,283	+		PFLU_RS16355	0.11	+1.1
3,709,283	+		PFLU_RS16355	0.11	-0.2
3,709,283	+		PFLU_RS16355	0.11	+1.1
3,709,283	+		PFLU_RS16355	0.11	+0.8
3,709,283	+		PFLU_RS16355	0.11	+0.0
3,709,284	-		PFLU_RS16355	0.12	+1.8
3,709,284	-		PFLU_RS16355	0.12	-1.5
3,709,284	-		PFLU_RS16355	0.12	-0.5
3,709,284	-		PFLU_RS16355	0.12	+1.0