Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30660

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
2,375,933	+				-1.3
2,375,979	-				+0.5
2,376,004	+				-0.0
2,376,004	+				-1.5
2,376,004	+				+0.2
2,376,004	+				+0.6
2,376,004	+				+0.3
2,376,004	+				-0.6
2,376,004	+				+1.3
2,376,004	+				+0.2
2,376,004	+				+1.4
2,376,004	+				+0.7
2,376,004	+				+0.0
2,376,004	+				+0.8
2,376,004	+				+0.8
2,376,005	-				-0.2
2,376,005	-				+1.0
2,376,005	-				+1.6
2,376,005	-				+0.1
2,376,005	-				+1.0
2,376,005	-				+1.3
2,376,005	-				-0.4
2,376,005	-				-0.6
2,376,005	-				+1.0
2,376,005	-				-1.8
2,376,005	-				-0.4
2,376,005	-				-1.0
2,376,005	-				-1.8
2,376,008	+				+0.1
2,376,008	+				+0.6
2,376,009	-				-0.6
2,376,035	+				-0.4
2,376,035	+				-0.6
2,376,036	-				-0.3
2,376,036	-				+2.0
2,376,040	+				+0.2
2,376,040	+				-0.0
2,376,040	+				+0.1
2,376,112	+				+0.2
2,376,112	+				+0.6
2,376,113	-				-0.0
2,376,113	-				+1.6
2,376,140	+		PFLU_RS10785	0.11	-0.8
2,376,140	+		PFLU_RS10785	0.11	+0.9
2,376,141	-		PFLU_RS10785	0.12	-0.3
2,376,141	-		PFLU_RS10785	0.12	-1.1
2,376,141	-		PFLU_RS10785	0.12	-1.0
2,376,141	-		PFLU_RS10785	0.12	-0.4
2,376,146	+		PFLU_RS10785	0.13	+0.6
2,376,147	-		PFLU_RS10785	0.14	-0.3
2,376,153	+		PFLU_RS10785	0.15	-0.7
2,376,153	+		PFLU_RS10785	0.15	-0.5
2,376,154	-		PFLU_RS10785	0.16	+0.1
2,376,178	+		PFLU_RS10785	0.23	-0.2
2,376,178	+		PFLU_RS10785	0.23	-1.4
2,376,179	-		PFLU_RS10785	0.23	+0.4
2,376,179	-		PFLU_RS10785	0.23	+0.4
2,376,206	+		PFLU_RS10785	0.31	+0.1
2,376,206	+		PFLU_RS10785	0.31	+1.0
2,376,226	-		PFLU_RS10785	0.37	-0.9
2,376,226	-		PFLU_RS10785	0.37	+0.2
2,376,228	+		PFLU_RS10785	0.38	-0.2
2,376,229	-		PFLU_RS10785	0.38	-2.2
2,376,229	-		PFLU_RS10785	0.38	-0.8
2,376,229	-		PFLU_RS10785	0.38	-0.0
2,376,267	+		PFLU_RS10785	0.50	+0.2
2,376,279	-		PFLU_RS10785	0.53	-0.4
2,376,322	+		PFLU_RS10785	0.66	+0.4
2,376,322	+		PFLU_RS10785	0.66	+1.0
2,376,322	+		PFLU_RS10785	0.66	-0.2
2,376,322	+		PFLU_RS10785	0.66	-1.4
2,376,323	-		PFLU_RS10785	0.66	+0.8
2,376,323	-		PFLU_RS10785	0.66	+1.4
2,376,323	-		PFLU_RS10785	0.66	+0.4
2,376,323	-		PFLU_RS10785	0.66	+1.1
2,376,335	+		PFLU_RS10785	0.70	-0.5
2,376,335	+		PFLU_RS10785	0.70	+1.6
2,376,336	-		PFLU_RS10785	0.70	-0.6
2,376,336	-		PFLU_RS10785	0.70	+0.7
2,376,336	-		PFLU_RS10785	0.70	-0.3
2,376,389	-		PFLU_RS10785	0.86	+0.2
2,376,389	-		PFLU_RS10785	0.86	+1.1
2,376,389	-		PFLU_RS10785	0.86	-0.8
2,376,389	-		PFLU_RS10785	0.86	-1.4
2,376,405	-				-0.4
2,376,429	+				+1.6
2,376,430	-				-0.1
2,376,482	+		PFLU_RS30655	0.11	-1.8
2,376,482	+		PFLU_RS30655	0.11	+1.4
2,376,482	+		PFLU_RS30655	0.11	-1.0
2,376,482	+		PFLU_RS30655	0.11	-1.8
2,376,482	+		PFLU_RS30655	0.11	-0.4
2,376,482	+		PFLU_RS30655	0.11	-1.5
2,376,482	+		PFLU_RS30655	0.11	+0.4
2,376,482	+		PFLU_RS30655	0.11	-2.0
2,376,482	+		PFLU_RS30655	0.11	+1.5
2,376,482	+		PFLU_RS30655	0.11	-2.4
2,376,483	-		PFLU_RS30655	0.12	-1.4
2,376,483	-		PFLU_RS30655	0.12	+1.3
2,376,483	-		PFLU_RS30655	0.12	+0.2
2,376,510	-		PFLU_RS30655	0.17	-1.0
2,376,510	-		PFLU_RS30655	0.17	-0.0
2,376,526	+		PFLU_RS30655	0.21	+1.2
2,376,526	+		PFLU_RS30655	0.21	-0.3
2,376,526	+		PFLU_RS30655	0.21	+1.7
2,376,527	-		PFLU_RS30655	0.21	-1.4
2,376,527	-		PFLU_RS30655	0.21	-0.3
2,376,527	-		PFLU_RS30655	0.21	+0.7
2,376,551	+		PFLU_RS30655	0.26	-0.3
2,376,551	+		PFLU_RS30655	0.26	-0.0
2,376,551	+		PFLU_RS30655	0.26	-2.2
2,376,551	+		PFLU_RS30655	0.26	-0.9
2,376,551	+		PFLU_RS30655	0.26	+1.0
2,376,551	+		PFLU_RS30655	0.26	-0.0
2,376,552	-		PFLU_RS30655	0.26	-1.4
2,376,552	-		PFLU_RS30655	0.26	-1.2
2,376,552	-		PFLU_RS30655	0.26	-0.6
2,376,552	-		PFLU_RS30655	0.26	-0.5
2,376,552	-		PFLU_RS30655	0.26	-0.2
2,376,552	-		PFLU_RS30655	0.26	-2.2
2,376,620	+		PFLU_RS30655	0.41	-2.5
2,376,621	-		PFLU_RS30655	0.41	+2.4
2,376,760	+		PFLU_RS30655	0.70	-0.9
2,376,760	+		PFLU_RS30655	0.70	+0.6
2,376,761	-		PFLU_RS30655	0.71	+1.3
2,376,761	-		PFLU_RS30655	0.71	+0.5
2,376,761	-		PFLU_RS30655	0.71	+0.1
2,376,762	+		PFLU_RS30655	0.71	-1.0
2,376,763	-		PFLU_RS30655	0.71	-1.8
2,376,763	-		PFLU_RS30655	0.71	-1.1
2,376,763	-		PFLU_RS30655	0.71	+0.8
2,376,763	-		PFLU_RS30655	0.71	+0.2
2,376,791	+		PFLU_RS30655	0.77	+1.0
2,376,791	+		PFLU_RS30655	0.77	+0.6
2,376,791	+		PFLU_RS30655	0.77	+0.5
2,376,797	+		PFLU_RS30655	0.78	-0.6
2,376,807	-		PFLU_RS30655	0.80	-0.6
2,376,807	-		PFLU_RS30655	0.80	-1.4
2,376,807	-		PFLU_RS30655	0.80	+0.6
2,376,807	-		PFLU_RS30655	0.80	-2.0
2,376,807	-		PFLU_RS30655	0.80	+0.2
2,376,807	-		PFLU_RS30655	0.80	+0.3
2,376,833	+		PFLU_RS30655	0.86	+0.3
2,376,833	+		PFLU_RS30655	0.86	+1.0
2,376,839	+		PFLU_RS30655	0.87	-0.3
2,376,839	+		PFLU_RS30655	0.87	+1.0
2,376,892	+				-0.6
2,376,892	+				-0.6
2,376,892	+				-0.1
2,376,893	-				+0.4
2,376,893	-				+1.5
2,376,893	-				+1.1
2,376,898	+				+0.0
2,376,898	+				-0.0
2,376,898	+				+2.0
2,376,898	+				+0.6
2,376,898	+				-0.0
2,376,899	-				-0.7
2,376,899	-				-0.6
2,376,899	-				-1.4
2,376,899	-				+1.0
2,376,899	-				-1.5
2,376,899	-				-0.1
2,376,899	-				-0.2
2,376,899	-				+0.1
2,376,899	-				-1.2
2,376,906	+				-0.6
2,376,906	+				+1.0
2,376,907	-				-0.6
2,376,907	-				+2.3
2,376,907	-				+0.1
2,376,907	-				+1.6
2,376,907	-				+1.0
2,376,907	-				-0.8
2,376,918	+				-0.3
2,376,918	+				+0.7
2,376,918	+				-0.3
2,376,918	+				-0.0
2,376,919	-				-0.7
2,376,919	-				+0.5
2,376,919	-				-0.4
2,376,919	-				-0.0
2,376,919	-				-0.0
2,376,919	-				+0.3
2,376,919	-				+0.5
2,376,919	-				+0.4
2,376,919	-				-1.2
2,376,922	+				+0.3
2,376,995	+		PFLU_RS30660	0.39	+0.5
2,376,995	+		PFLU_RS30660	0.39	-0.0
2,376,995	+		PFLU_RS30660	0.39	+1.4
2,376,996	-		PFLU_RS30660	0.39	+0.3
2,376,996	-		PFLU_RS30660	0.39	+3.1
2,376,996	-		PFLU_RS30660	0.39	+2.3
2,377,102	-				+0.1
2,377,102	-				+1.0
2,377,102	-				+1.6
2,377,108	+				+0.1
2,377,109	-				+1.6
2,377,109	-				+1.0
2,377,109	-				-1.8
2,377,109	-				-0.4
2,377,110	+				+0.8
2,377,110	+				-1.0
2,377,110	+				+0.6
2,377,110	+				+2.3
2,377,110	+				+0.2
2,377,110	+				-1.9
2,377,110	+				-0.3
2,377,110	+				+0.3
2,377,110	+				-0.7
2,377,110	+				+1.3
2,377,110	+				+0.7
2,377,111	-				-1.7
2,377,111	-				-0.0
2,377,111	-				-0.9
2,377,111	-				-1.9
2,377,111	-				-1.3
2,377,111	-				+0.8
2,377,111	-				-1.0
2,377,111	-				+0.5
2,377,111	-				-0.8
2,377,114	+				+1.0
2,377,114	+				-0.6
2,377,114	+				-0.7
2,377,114	+				-1.0
2,377,114	+				-0.5
2,377,114	+				-0.8
2,377,114	+				-0.9
2,377,114	+				+0.7
2,377,114	+				-0.4
2,377,114	+				+0.3
2,377,115	-				+0.6
2,377,115	-				+0.8
2,377,115	-				-1.4
2,377,115	-				-0.2
2,377,115	-				+0.2
2,377,115	-				-0.1
2,377,115	-				+1.0
2,377,115	-				-0.3
2,377,115	-				+0.6
2,377,115	-				-1.0
2,377,115	-				-0.6
2,377,115	-				+0.2
2,377,115	-				-0.8
2,377,115	-				-0.2
2,377,115	-				+0.8
2,377,115	-				-1.2
2,377,151	+				-0.3
2,377,151	+				+0.0
2,377,151	+				-1.3
2,377,151	+				+0.5
2,377,151	+				-0.4
2,377,151	+				+0.2
2,377,152	-				-1.1
2,377,152	-				+0.5
2,377,152	-				+0.3
2,377,152	-				-0.7
2,377,152	-				+0.4
2,377,152	-				+1.5
2,377,224	-				+0.1
2,377,237	+				-0.4
2,377,238	-				+1.0
2,377,238	-				-0.6
2,377,241	+				+0.4
2,377,241	+				-0.6
2,377,241	+				+1.6
2,377,241	+				+1.6
2,377,242	-				+0.1
2,377,303	-				+1.0
2,377,325	+				-1.2
2,377,349	+				+1.0
2,377,349	+				+0.2
2,377,349	+				-0.3
2,377,349	+				-0.3
2,377,350	-				+0.1
2,377,350	-				+0.7
2,377,350	-				-0.5
2,377,350	-				+0.6
2,377,353	+				-1.0
2,377,353	+				+0.2
2,377,383	+				+0.6
2,377,384	-				+1.3
2,377,443	+				+0.4
2,377,443	+				-1.1
2,377,444	-				+0.6
2,377,563	+		PFLU_RS10790	0.18	-0.2
2,377,563	+		PFLU_RS10790	0.18	-0.0
2,377,593	+		PFLU_RS10790	0.28	-0.3
2,377,594	-		PFLU_RS10790	0.28	-1.3
2,377,594	-		PFLU_RS10790	0.28	+1.1
2,377,606	+		PFLU_RS10790	0.32	+0.2
2,377,606	+		PFLU_RS10790	0.32	+0.6
2,377,606	+		PFLU_RS10790	0.32	-0.8
2,377,606	+		PFLU_RS10790	0.32	-1.4
2,377,606	+		PFLU_RS10790	0.32	+2.6
2,377,607	-		PFLU_RS10790	0.33	-1.6
2,377,607	-		PFLU_RS10790	0.33	+0.3
2,377,607	-		PFLU_RS10790	0.33	-0.5
2,377,607	-		PFLU_RS10790	0.33	+2.0
2,377,607	-		PFLU_RS10790	0.33	-1.0
2,377,607	-		PFLU_RS10790	0.33	+0.6
2,377,611	+		PFLU_RS10790	0.34	+0.3
2,377,646	+		PFLU_RS10790	0.46	+0.5
2,377,646	+		PFLU_RS10790	0.46	+0.6
2,377,646	+		PFLU_RS10790	0.46	+0.1
2,377,646	+		PFLU_RS10790	0.46	+1.2
2,377,646	+		PFLU_RS10790	0.46	-1.6
2,377,647	-		PFLU_RS10790	0.46	+0.0
2,377,647	-		PFLU_RS10790	0.46	-0.3
2,377,647	-		PFLU_RS10790	0.46	-0.6
2,377,647	-		PFLU_RS10790	0.46	-0.5
2,377,647	-		PFLU_RS10790	0.46	-1.0
2,377,647	-		PFLU_RS10790	0.46	+0.2
2,377,738	-		PFLU_RS10790	0.76	-0.6
2,377,738	-		PFLU_RS10790	0.76	-0.9
2,377,762	+		PFLU_RS10790	0.84	-0.8
2,377,875	+				+0.4
2,377,875	+				-0.6
2,377,876	-				-0.4
2,377,876	-				-0.5
2,377,906	+		PFLU_RS10795	0.14	+1.6
2,377,906	+		PFLU_RS10795	0.14	+0.9
2,377,907	-		PFLU_RS10795	0.14	-0.6
2,377,907	-		PFLU_RS10795	0.14	-0.5
2,377,963	+		PFLU_RS10795	0.23	-0.3
2,377,982	+		PFLU_RS10795	0.26	-0.0
2,377,982	+		PFLU_RS10795	0.26	-0.4
2,377,983	-		PFLU_RS10795	0.26	-0.6
2,377,983	-		PFLU_RS10795	0.26	+0.3
2,377,995	+		PFLU_RS10795	0.28	-0.0
2,377,995	+		PFLU_RS10795	0.28	+1.2
2,377,996	-		PFLU_RS10795	0.29	-0.5
2,377,996	-		PFLU_RS10795	0.29	+0.6
2,377,996	-		PFLU_RS10795	0.29	-1.6
2,378,004	+		PFLU_RS10795	0.30	-0.8
2,378,005	-		PFLU_RS10795	0.30	-0.4
2,378,005	-		PFLU_RS10795	0.30	-0.4
2,378,005	-		PFLU_RS10795	0.30	-1.0
2,378,047	+		PFLU_RS10795	0.37	-1.6
2,378,047	+		PFLU_RS10795	0.37	-0.1
2,378,048	-		PFLU_RS10795	0.37	+0.6
2,378,048	-		PFLU_RS10795	0.37	+1.0
2,378,090	+		PFLU_RS10795	0.44	+0.5