Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29555

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
6,558,691	+		PFLU_RS29550	0.63	+0.1
6,558,739	-		PFLU_RS29550	0.66	+0.3
6,558,755	+		PFLU_RS29550	0.66	+0.1
6,558,755	+		PFLU_RS29550	0.66	+0.4
6,558,755	+		PFLU_RS29550	0.66	-0.9
6,558,756	-		PFLU_RS29550	0.66	-1.8
6,558,829	+		PFLU_RS29550	0.70	+2.0
6,558,830	-		PFLU_RS29550	0.70	+0.2
6,558,840	+		PFLU_RS29550	0.70	-0.4
6,558,840	+		PFLU_RS29550	0.70	+0.4
6,558,840	+		PFLU_RS29550	0.70	+0.6
6,558,840	+		PFLU_RS29550	0.70	-1.4
6,558,892	+		PFLU_RS29550	0.73	-0.2
6,558,892	+		PFLU_RS29550	0.73	+1.1
6,558,892	+		PFLU_RS29550	0.73	-1.9
6,558,892	+		PFLU_RS29550	0.73	-1.9
6,558,892	+		PFLU_RS29550	0.73	-0.9
6,558,892	+		PFLU_RS29550	0.73	+0.1
6,558,892	+		PFLU_RS29550	0.73	+1.6
6,558,892	+		PFLU_RS29550	0.73	+1.1
6,558,892	+		PFLU_RS29550	0.73	-0.4
6,558,893	-		PFLU_RS29550	0.73	+0.6
6,558,893	-		PFLU_RS29550	0.73	-1.5
6,558,893	-		PFLU_RS29550	0.73	-1.9
6,558,893	-		PFLU_RS29550	0.73	+1.6
6,558,893	-		PFLU_RS29550	0.73	-0.9
6,558,924	+		PFLU_RS29550	0.75	-1.2
6,558,924	+		PFLU_RS29550	0.75	-0.7
6,558,925	-		PFLU_RS29550	0.75	-0.9
6,558,925	-		PFLU_RS29550	0.75	+1.9
6,559,034	+		PFLU_RS29550	0.80	+0.3
6,559,034	+		PFLU_RS29550	0.80	-1.4
6,559,035	-		PFLU_RS29550	0.80	+0.1
6,559,035	-		PFLU_RS29550	0.80	+0.6
6,559,035	-		PFLU_RS29550	0.80	+0.6
6,559,035	-		PFLU_RS29550	0.80	+0.2
6,559,035	-		PFLU_RS29550	0.80	+1.1
6,559,162	+		PFLU_RS29550	0.86	-0.2
6,559,162	+		PFLU_RS29550	0.86	-0.2
6,559,162	+		PFLU_RS29550	0.86	-0.4
6,559,162	+		PFLU_RS29550	0.86	+2.0
6,559,163	-		PFLU_RS29550	0.86	-0.7
6,559,439	-				+0.1
6,559,439	-				+0.5
6,559,439	-				-0.2
6,559,466	+				-0.8
6,559,466	+				-2.1
6,559,466	+				+0.5
6,559,467	-				+0.4
6,559,479	+				+0.9
6,559,479	+				-0.4
6,559,479	+				+0.2
6,559,479	+				-0.5
6,559,479	+				+0.1
6,559,479	+				-1.1
6,559,479	+				+0.9
6,559,479	+				-0.1
6,559,479	+				+1.1
6,559,479	+				-0.3
6,559,479	+				-0.5
6,559,479	+				-0.0
6,559,479	+				-1.1
6,559,479	+				+0.1
6,559,479	+				-1.4
6,559,479	+				-0.4
6,559,479	+				-0.6
6,559,479	+				+0.6
6,559,479	+				+0.8
6,559,479	+				+0.5
6,559,479	+				-0.1
6,559,479	+				+0.7
6,559,479	+				+1.1
6,559,479	+				-1.2
6,559,479	+				+0.1
6,559,479	+				-0.4
6,559,479	+				-0.9
6,559,479	+				-1.4
6,559,479	+				-0.8
6,559,479	+				+0.3
6,559,479	+				-0.3
6,559,479	+				-0.2
6,559,479	+				+0.3
6,559,479	+				+0.9
6,559,479	+				+0.5
6,559,479	+				-0.6
6,559,479	+				+0.5
6,559,479	+				-0.1
6,559,479	+				-0.2
6,559,479	+				+0.1
6,559,479	+				-0.2
6,559,479	+				+0.3
6,559,479	+				-0.9
6,559,479	+				-0.2
6,559,479	+				-0.6
6,559,479	+				+0.3
6,559,479	+				-2.5
6,559,480	-				+1.1
6,559,480	-				+0.4
6,559,480	-				+0.3
6,559,480	-				-0.4
6,559,480	-				-0.6
6,559,480	-				-0.9
6,559,480	-				+1.3
6,559,480	-				-1.4
6,559,480	-				+0.6
6,559,480	-				+0.5
6,559,480	-				+0.1
6,559,480	-				+0.4
6,559,480	-				+0.2
6,559,480	-				+0.9
6,559,480	-				+0.1
6,559,480	-				+0.2
6,559,480	-				+0.3
6,559,480	-				+0.6
6,559,480	-				+0.3
6,559,480	-				+1.1
6,559,480	-				-0.2
6,559,480	-				-1.5
6,559,480	-				+0.7
6,559,480	-				-0.2
6,559,480	-				+0.5
6,559,480	-				+0.4
6,559,480	-				-0.3
6,559,480	-				+0.1
6,559,480	-				-0.7
6,559,480	-				+0.7
6,559,480	-				+0.4
6,559,480	-				+0.7
6,559,480	-				-0.9
6,559,480	-				-0.8
6,559,480	-				-0.2
6,559,480	-				-1.2
6,559,480	-				+1.1
6,559,480	-				+0.6
6,559,480	-				+0.4
6,559,480	-				+1.0
6,559,480	-				-0.6
6,559,480	-				+0.4
6,559,480	-				-0.2
6,559,480	-				+0.4
6,559,480	-				-0.8
6,559,480	-				+0.1
6,559,480	-				+0.2
6,559,480	-				+1.4
6,559,480	-				+0.7
6,559,480	-				+0.1
6,559,480	-				+1.9
6,559,480	-				+0.6
6,559,480	-				+0.1
6,559,480	-				+0.5
6,559,480	-				-0.5
6,559,480	-				-1.2
6,559,480	-				+0.8
6,559,483	+				-0.4
6,559,483	+				-0.2
6,559,483	+				-0.9
6,559,483	+				+1.6
6,559,483	+				+0.5
6,559,483	+				-0.0
6,559,483	+				-0.2
6,559,483	+				+0.3
6,559,483	+				-0.4
6,559,483	+				-0.7
6,559,483	+				+0.1
6,559,483	+				-0.4
6,559,484	-				+0.9
6,559,484	-				+0.2
6,559,484	-				-1.6
6,559,484	-				-0.3
6,559,484	-				+0.1
6,559,484	-				-0.2
6,559,484	-				-0.8
6,559,484	-				-0.6
6,559,484	-				+1.0
6,559,484	-				+0.7
6,559,484	-				+0.8
6,559,484	-				-1.4
6,559,484	-				+0.8
6,559,484	-				+0.3
6,559,495	+				+2.1
6,559,495	+				+0.2
6,559,495	+				+1.2
6,559,495	+				+0.7
6,559,496	-				+1.4
6,559,496	-				-0.5
6,559,497	+				+0.8
6,559,497	+				-0.5
6,559,497	+				+1.2
6,559,497	+				+1.5
6,559,497	+				+0.7
6,559,497	+				+0.1
6,559,497	+				+0.5
6,559,497	+				-0.0
6,559,497	+				+0.0
6,559,498	-				+0.8
6,559,498	-				+1.6
6,559,498	-				+1.3
6,559,498	-				+0.2
6,559,511	+				+0.8
6,559,512	-				+0.2
6,559,512	-				+0.3
6,559,512	-				-0.4
6,559,611	+				+0.3
6,559,613	+				+1.1
6,559,614	-				+0.9
6,559,630	+				+4.0
6,559,630	+				+0.7
6,559,860	+		PFLU_RS29555	0.24	+0.7
6,559,860	+		PFLU_RS29555	0.24	-0.4
6,559,860	+		PFLU_RS29555	0.24	+0.4
6,559,861	-		PFLU_RS29555	0.24	+0.7
6,560,247	+		PFLU_RS29555	0.51	+1.3
6,560,250	+		PFLU_RS29555	0.51	+0.4
6,560,250	+		PFLU_RS29555	0.51	+1.0
6,560,250	+		PFLU_RS29555	0.51	-0.9
6,560,250	+		PFLU_RS29555	0.51	+1.1
6,560,250	+		PFLU_RS29555	0.51	+1.6
6,560,251	-		PFLU_RS29555	0.51	+1.2
6,560,251	-		PFLU_RS29555	0.51	+1.0
6,560,394	+		PFLU_RS29555	0.62	-0.1
6,560,395	-		PFLU_RS29555	0.62	+0.1
6,560,395	-		PFLU_RS29555	0.62	+0.9
6,560,412	+		PFLU_RS29555	0.63	+1.2
6,560,412	+		PFLU_RS29555	0.63	-0.2
6,560,412	+		PFLU_RS29555	0.63	+0.6
6,560,412	+		PFLU_RS29555	0.63	-0.4
6,560,412	+		PFLU_RS29555	0.63	+0.5
6,560,413	-		PFLU_RS29555	0.63	+2.9
6,560,413	-		PFLU_RS29555	0.63	-0.8
6,560,413	-		PFLU_RS29555	0.63	+0.2
6,560,413	-		PFLU_RS29555	0.63	+1.0
6,560,413	-		PFLU_RS29555	0.63	+0.3
6,560,413	-		PFLU_RS29555	0.63	-0.9
6,560,413	-		PFLU_RS29555	0.63	+0.5
6,560,413	-		PFLU_RS29555	0.63	-0.2
6,560,484	+		PFLU_RS29555	0.68	+0.6
6,560,484	+		PFLU_RS29555	0.68	-0.2
6,560,484	+		PFLU_RS29555	0.68	+0.9
6,560,485	-		PFLU_RS29555	0.68	+0.7
6,560,485	-		PFLU_RS29555	0.68	+0.1
6,560,485	-		PFLU_RS29555	0.68	+1.0
6,560,485	-		PFLU_RS29555	0.68	+1.1
6,560,485	-		PFLU_RS29555	0.68	+0.1
6,560,485	-		PFLU_RS29555	0.68	+0.6
6,560,514	+		PFLU_RS29555	0.70	-0.4
6,560,598	+		PFLU_RS29555	0.76	+1.7
6,560,598	+		PFLU_RS29555	0.76	+2.4
6,560,598	+		PFLU_RS29555	0.76	+0.2
6,560,598	+		PFLU_RS29555	0.76	+1.3
6,560,598	+		PFLU_RS29555	0.76	-0.2
6,560,598	+		PFLU_RS29555	0.76	+0.5
6,560,598	+		PFLU_RS29555	0.76	+0.4
6,560,598	+		PFLU_RS29555	0.76	+0.5
6,560,598	+		PFLU_RS29555	0.76	+0.3
6,560,598	+		PFLU_RS29555	0.76	+2.0
6,560,598	+		PFLU_RS29555	0.76	+0.7
6,560,598	+		PFLU_RS29555	0.76	+0.8
6,560,598	+		PFLU_RS29555	0.76	+0.6
6,560,598	+		PFLU_RS29555	0.76	+0.2
6,560,598	+		PFLU_RS29555	0.76	+0.5
6,560,598	+		PFLU_RS29555	0.76	+0.5
6,560,598	+		PFLU_RS29555	0.76	-0.0
6,560,598	+		PFLU_RS29555	0.76	+1.3
6,560,599	-		PFLU_RS29555	0.76	+0.8
6,560,599	-		PFLU_RS29555	0.76	-1.1
6,560,599	-		PFLU_RS29555	0.76	+0.6
6,560,599	-		PFLU_RS29555	0.76	+0.9
6,560,599	-		PFLU_RS29555	0.76	+1.2
6,560,599	-		PFLU_RS29555	0.76	+0.7
6,560,599	-		PFLU_RS29555	0.76	+0.0
6,560,599	-		PFLU_RS29555	0.76	-0.1
6,560,599	-		PFLU_RS29555	0.76	+0.8
6,560,599	-		PFLU_RS29555	0.76	+0.6
6,560,599	-		PFLU_RS29555	0.76	+1.1
6,560,599	-		PFLU_RS29555	0.76	+1.8
6,560,599	-		PFLU_RS29555	0.76	+0.4
6,560,599	-		PFLU_RS29555	0.76	+1.0
6,560,599	-		PFLU_RS29555	0.76	+0.3
6,560,599	-		PFLU_RS29555	0.76	+0.9
6,560,715	+		PFLU_RS29555	0.85	+1.2
6,560,715	+		PFLU_RS29555	0.85	+0.6
6,560,716	-		PFLU_RS29555	0.85	-1.1
6,560,716	-		PFLU_RS29555	0.85	+1.3
6,560,716	-		PFLU_RS29555	0.85	+0.4
6,560,716	-		PFLU_RS29555	0.85	+2.1
6,560,716	-		PFLU_RS29555	0.85	+0.4
6,560,716	-		PFLU_RS29555	0.85	-0.2
6,560,727	+		PFLU_RS29555	0.85	+1.1
6,560,727	+		PFLU_RS29555	0.85	+1.2
6,560,727	+		PFLU_RS29555	0.85	-0.2
6,560,727	+		PFLU_RS29555	0.85	+1.3
6,560,727	+		PFLU_RS29555	0.85	+1.4
6,560,727	+		PFLU_RS29555	0.85	+1.1
6,560,728	-		PFLU_RS29555	0.86	-0.4
6,560,728	-		PFLU_RS29555	0.86	-2.2
6,560,728	-		PFLU_RS29555	0.86	+2.1
6,560,736	+		PFLU_RS29555	0.86	+1.5
6,560,937	-				-0.2
6,560,944	+				-0.8
6,560,944	+				+0.5
6,560,945	-				-0.1
6,560,945	-				+0.9
6,560,945	-				-0.3
6,561,040	+				-0.2
6,561,040	+				-0.6
6,561,041	-				-0.9
6,561,041	-				-0.7
6,561,041	-				+0.4
6,561,041	-				-1.2
6,561,041	-				-0.7
6,561,064	+				+0.3
6,561,064	+				+0.2
6,561,064	+				+1.0
6,561,065	-				+1.1
6,561,065	-				+0.4
6,561,065	-				-0.5
6,561,065	-				+0.4
6,561,065	-				+0.5
6,561,065	-				+0.6
6,561,187	+		PFLU_RS29560	0.39	+0.5
6,561,209	+		PFLU_RS29560	0.45	-0.7
6,561,430	+				-1.2
6,561,430	+				-0.0
6,561,430	+				+0.2
6,561,430	+				+0.1
6,561,430	+				+0.1
6,561,430	+				+0.6
6,561,431	-				+1.3
6,561,431	-				-1.5
6,561,434	+				+0.3
6,561,434	+				+0.3
6,561,434	+				-0.7
6,561,434	+				+0.4
6,561,434	+				+0.5
6,561,434	+				+0.1
6,561,434	+				+0.1
6,561,434	+				+0.2
6,561,435	-				+0.2
6,561,435	-				-1.0
6,561,522	+				-0.1
6,561,522	+				+0.2
6,561,523	-				+0.7
6,561,523	-				+0.8
6,561,524	+				-1.2
6,561,524	+				-0.1
6,561,525	-				+0.2
6,561,697	+		PFLU_RS29565	0.17	+0.1
6,561,697	+		PFLU_RS29565	0.17	-0.8
6,561,698	-		PFLU_RS29565	0.17	-0.7
6,561,698	-		PFLU_RS29565	0.17	+0.2
6,561,698	-		PFLU_RS29565	0.17	-1.3
6,561,698	-		PFLU_RS29565	0.17	-0.1
6,561,698	-		PFLU_RS29565	0.17	-0.9
6,561,698	-		PFLU_RS29565	0.17	+0.3
6,561,772	+		PFLU_RS29565	0.25	+0.4
6,561,772	+		PFLU_RS29565	0.25	-0.6
6,561,772	+		PFLU_RS29565	0.25	-1.8
6,561,772	+		PFLU_RS29565	0.25	-1.7
6,561,772	+		PFLU_RS29565	0.25	+0.7
6,561,772	+		PFLU_RS29565	0.25	-0.6
6,561,772	+		PFLU_RS29565	0.25	+0.6
6,561,772	+		PFLU_RS29565	0.25	+0.3
6,561,773	-		PFLU_RS29565	0.25	-0.8
6,561,773	-		PFLU_RS29565	0.25	-0.7
6,561,773	-		PFLU_RS29565	0.25	+0.4
6,561,773	-		PFLU_RS29565	0.25	+0.1
6,561,773	-		PFLU_RS29565	0.25	+1.1
6,561,773	-		PFLU_RS29565	0.25	+1.4
6,561,773	-		PFLU_RS29565	0.25	-1.2
6,561,773	-		PFLU_RS29565	0.25	-0.8
6,561,805	-		PFLU_RS29565	0.29	-1.1
6,561,811	+		PFLU_RS29565	0.29	+2.4
6,561,811	+		PFLU_RS29565	0.29	-0.3
6,561,812	-		PFLU_RS29565	0.30	-0.1
6,561,839	+		PFLU_RS29565	0.32	+0.3
6,561,851	+		PFLU_RS29565	0.34	+0.3
6,561,851	+		PFLU_RS29565	0.34	+3.1
6,561,851	+		PFLU_RS29565	0.34	-0.4
6,561,851	+		PFLU_RS29565	0.34	+0.8
6,561,851	+		PFLU_RS29565	0.34	-1.7
6,561,851	+		PFLU_RS29565	0.34	+0.3
6,561,851	+		PFLU_RS29565	0.34	+0.2
6,561,851	+		PFLU_RS29565	0.34	+0.9
6,561,851	+		PFLU_RS29565	0.34	-1.5
6,561,852	-		PFLU_RS29565	0.34	+0.6
6,561,852	-		PFLU_RS29565	0.34	+0.5
6,561,852	-		PFLU_RS29565	0.34	-0.8
6,561,852	-		PFLU_RS29565	0.34	-1.5
6,561,852	-		PFLU_RS29565	0.34	+0.6
6,561,852	-		PFLU_RS29565	0.34	-1.3
6,561,852	-		PFLU_RS29565	0.34	-1.1
6,561,852	-		PFLU_RS29565	0.34	+0.6
6,561,852	-		PFLU_RS29565	0.34	+0.3
6,561,852	-		PFLU_RS29565	0.34	-1.4
6,561,876	+		PFLU_RS29565	0.36	+2.0
6,561,877	-		PFLU_RS29565	0.37	-1.4