Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24650

Experiment: D-Trehalose 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24645 and PFLU_RS24650 overlap by 8 nucleotidesPFLU_RS24650 and PFLU_RS24655 are separated by 36 nucleotides PFLU_RS24645: PFLU_RS24645 - N-acetylglucosamine-6-phosphate deacetylase, at 5,517,468 to 5,518,574 _RS24645 PFLU_RS24650: PFLU_RS24650 - SIS domain-containing protein, at 5,518,567 to 5,519,577 _RS24650 PFLU_RS24655: PFLU_RS24655 - phosphoenolpyruvate--protein phosphotransferase, at 5,519,614 to 5,522,127 _RS24655 Position (kb) 5518 5519 5520Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5517.588 kb on + strand, within PFLU_RS24645at 5517.588 kb on + strand, within PFLU_RS24645at 5517.588 kb on + strand, within PFLU_RS24645at 5517.589 kb on - strand, within PFLU_RS24645at 5517.589 kb on - strand, within PFLU_RS24645at 5517.791 kb on + strand, within PFLU_RS24645at 5517.792 kb on - strand, within PFLU_RS24645at 5517.792 kb on - strand, within PFLU_RS24645at 5517.792 kb on - strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.834 kb on + strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.835 kb on - strand, within PFLU_RS24645at 5517.906 kb on + strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5517.907 kb on - strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.029 kb on + strand, within PFLU_RS24645at 5518.030 kb on - strand, within PFLU_RS24645at 5518.030 kb on - strand, within PFLU_RS24645at 5518.030 kb on - strand, within PFLU_RS24645at 5518.030 kb on - strand, within PFLU_RS24645at 5518.030 kb on - strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.083 kb on + strand, within PFLU_RS24645at 5518.084 kb on - strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.278 kb on + strand, within PFLU_RS24645at 5518.279 kb on - strand, within PFLU_RS24645at 5518.279 kb on - strand, within PFLU_RS24645at 5518.279 kb on - strand, within PFLU_RS24645at 5518.279 kb on - strand, within PFLU_RS24645at 5518.446 kb on + strand, within PFLU_RS24645at 5518.446 kb on + strand, within PFLU_RS24645at 5518.447 kb on - strand, within PFLU_RS24645at 5518.447 kb on - strand, within PFLU_RS24645at 5518.447 kb on - strand, within PFLU_RS24645at 5518.534 kb on + strandat 5518.534 kb on + strandat 5518.534 kb on + strandat 5518.534 kb on + strandat 5518.534 kb on + strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.535 kb on - strandat 5518.720 kb on + strand, within PFLU_RS24650at 5518.720 kb on + strand, within PFLU_RS24650at 5518.721 kb on - strand, within PFLU_RS24650at 5518.721 kb on - strand, within PFLU_RS24650at 5518.721 kb on - strand, within PFLU_RS24650at 5518.729 kb on + strand, within PFLU_RS24650at 5518.729 kb on + strand, within PFLU_RS24650at 5518.729 kb on + strand, within PFLU_RS24650at 5518.729 kb on + strand, within PFLU_RS24650at 5518.887 kb on + strand, within PFLU_RS24650at 5518.887 kb on + strand, within PFLU_RS24650at 5518.888 kb on - strand, within PFLU_RS24650at 5518.888 kb on - strand, within PFLU_RS24650at 5518.888 kb on - strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.959 kb on + strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.960 kb on - strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.961 kb on + strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5518.962 kb on - strand, within PFLU_RS24650at 5519.010 kb on + strand, within PFLU_RS24650at 5519.107 kb on - strand, within PFLU_RS24650at 5519.107 kb on - strand, within PFLU_RS24650at 5519.107 kb on - strand, within PFLU_RS24650at 5519.107 kb on - strand, within PFLU_RS24650at 5519.107 kb on - strand, within PFLU_RS24650at 5519.305 kb on + strand, within PFLU_RS24650at 5519.305 kb on + strand, within PFLU_RS24650at 5519.306 kb on - strand, within PFLU_RS24650at 5519.306 kb on - strand, within PFLU_RS24650at 5519.306 kb on - strand, within PFLU_RS24650at 5519.306 kb on - strand, within PFLU_RS24650at 5519.318 kb on + strand, within PFLU_RS24650at 5519.318 kb on + strand, within PFLU_RS24650at 5519.491 kb on + strandat 5519.491 kb on + strandat 5519.491 kb on + strandat 5519.491 kb on + strandat 5519.492 kb on - strandat 5519.492 kb on - strandat 5519.604 kb on + strandat 5519.605 kb on - strandat 5519.605 kb on - strandat 5519.628 kb on + strandat 5519.628 kb on + strandat 5519.628 kb on + strandat 5519.628 kb on + strandat 5519.628 kb on + strandat 5519.629 kb on - strandat 5519.629 kb on - strandat 5519.629 kb on - strandat 5519.629 kb on - strandat 5520.111 kb on + strand, within PFLU_RS24655at 5520.112 kb on - strand, within PFLU_RS24655at 5520.140 kb on + strand, within PFLU_RS24655at 5520.140 kb on + strand, within PFLU_RS24655at 5520.141 kb on - strand, within PFLU_RS24655at 5520.141 kb on - strand, within PFLU_RS24655at 5520.141 kb on - strand, within PFLU_RS24655at 5520.185 kb on + strand, within PFLU_RS24655at 5520.186 kb on - strand, within PFLU_RS24655at 5520.186 kb on - strand, within PFLU_RS24655at 5520.186 kb on - strand, within PFLU_RS24655at 5520.378 kb on + strand, within PFLU_RS24655

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C)
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5,517,588 + PFLU_RS24645 0.11 +0.0
5,517,588 + PFLU_RS24645 0.11 -0.0
5,517,588 + PFLU_RS24645 0.11 -0.6
5,517,589 - PFLU_RS24645 0.11 -0.3
5,517,589 - PFLU_RS24645 0.11 -0.7
5,517,791 + PFLU_RS24645 0.29 -0.2
5,517,792 - PFLU_RS24645 0.29 -0.0
5,517,792 - PFLU_RS24645 0.29 +0.1
5,517,792 - PFLU_RS24645 0.29 +0.8
5,517,834 + PFLU_RS24645 0.33 +0.0
5,517,834 + PFLU_RS24645 0.33 -0.2
5,517,834 + PFLU_RS24645 0.33 +0.0
5,517,834 + PFLU_RS24645 0.33 +1.0
5,517,834 + PFLU_RS24645 0.33 -0.6
5,517,834 + PFLU_RS24645 0.33 +0.1
5,517,834 + PFLU_RS24645 0.33 -0.3
5,517,834 + PFLU_RS24645 0.33 -1.5
5,517,834 + PFLU_RS24645 0.33 -0.8
5,517,834 + PFLU_RS24645 0.33 +0.0
5,517,834 + PFLU_RS24645 0.33 -0.3
5,517,835 - PFLU_RS24645 0.33 -0.1
5,517,835 - PFLU_RS24645 0.33 -1.2
5,517,835 - PFLU_RS24645 0.33 -0.4
5,517,835 - PFLU_RS24645 0.33 -0.5
5,517,835 - PFLU_RS24645 0.33 +1.3
5,517,835 - PFLU_RS24645 0.33 -0.3
5,517,835 - PFLU_RS24645 0.33 -1.3
5,517,835 - PFLU_RS24645 0.33 -0.3
5,517,835 - PFLU_RS24645 0.33 +0.4
5,517,906 + PFLU_RS24645 0.40 +0.7
5,517,907 - PFLU_RS24645 0.40 +0.2
5,517,907 - PFLU_RS24645 0.40 -0.7
5,517,907 - PFLU_RS24645 0.40 +0.2
5,517,907 - PFLU_RS24645 0.40 -0.6
5,517,907 - PFLU_RS24645 0.40 -0.8
5,517,907 - PFLU_RS24645 0.40 +0.8
5,517,907 - PFLU_RS24645 0.40 -1.7
5,518,029 + PFLU_RS24645 0.51 -0.4
5,518,029 + PFLU_RS24645 0.51 -1.6
5,518,029 + PFLU_RS24645 0.51 -0.3
5,518,029 + PFLU_RS24645 0.51 -0.5
5,518,029 + PFLU_RS24645 0.51 -1.9
5,518,029 + PFLU_RS24645 0.51 +0.2
5,518,029 + PFLU_RS24645 0.51 +0.1
5,518,029 + PFLU_RS24645 0.51 +0.4
5,518,029 + PFLU_RS24645 0.51 +0.9
5,518,029 + PFLU_RS24645 0.51 +0.2
5,518,030 - PFLU_RS24645 0.51 -0.6
5,518,030 - PFLU_RS24645 0.51 -1.8
5,518,030 - PFLU_RS24645 0.51 -0.2
5,518,030 - PFLU_RS24645 0.51 -0.1
5,518,030 - PFLU_RS24645 0.51 +1.0
5,518,083 + PFLU_RS24645 0.56 +0.5
5,518,083 + PFLU_RS24645 0.56 -0.6
5,518,083 + PFLU_RS24645 0.56 -0.5
5,518,083 + PFLU_RS24645 0.56 -0.1
5,518,083 + PFLU_RS24645 0.56 -1.3
5,518,083 + PFLU_RS24645 0.56 +1.7
5,518,083 + PFLU_RS24645 0.56 -0.8
5,518,084 - PFLU_RS24645 0.56 +0.3
5,518,278 + PFLU_RS24645 0.73 -0.3
5,518,278 + PFLU_RS24645 0.73 +1.2
5,518,278 + PFLU_RS24645 0.73 +0.0
5,518,278 + PFLU_RS24645 0.73 -0.5
5,518,278 + PFLU_RS24645 0.73 +0.6
5,518,278 + PFLU_RS24645 0.73 +0.0
5,518,278 + PFLU_RS24645 0.73 -0.3
5,518,279 - PFLU_RS24645 0.73 +0.5
5,518,279 - PFLU_RS24645 0.73 +1.0
5,518,279 - PFLU_RS24645 0.73 -1.2
5,518,279 - PFLU_RS24645 0.73 -0.2
5,518,446 + PFLU_RS24645 0.88 +0.0
5,518,446 + PFLU_RS24645 0.88 -0.2
5,518,447 - PFLU_RS24645 0.88 +0.5
5,518,447 - PFLU_RS24645 0.88 +0.0
5,518,447 - PFLU_RS24645 0.88 +0.7
5,518,534 + +0.6
5,518,534 + +1.6
5,518,534 + -0.4
5,518,534 + -0.3
5,518,534 + +1.3
5,518,535 - +0.2
5,518,535 - +0.8
5,518,535 - -2.4
5,518,535 - +0.3
5,518,535 - -0.4
5,518,535 - -1.3
5,518,535 - -0.5
5,518,535 - +0.2
5,518,720 + PFLU_RS24650 0.15 -1.6
5,518,720 + PFLU_RS24650 0.15 +0.2
5,518,721 - PFLU_RS24650 0.15 +0.1
5,518,721 - PFLU_RS24650 0.15 +0.1
5,518,721 - PFLU_RS24650 0.15 +0.5
5,518,729 + PFLU_RS24650 0.16 +0.8
5,518,729 + PFLU_RS24650 0.16 -0.6
5,518,729 + PFLU_RS24650 0.16 +0.5
5,518,729 + PFLU_RS24650 0.16 +0.6
5,518,887 + PFLU_RS24650 0.32 +0.7
5,518,887 + PFLU_RS24650 0.32 +0.1
5,518,888 - PFLU_RS24650 0.32 +1.5
5,518,888 - PFLU_RS24650 0.32 -0.6
5,518,888 - PFLU_RS24650 0.32 -0.2
5,518,959 + PFLU_RS24650 0.39 +2.1
5,518,959 + PFLU_RS24650 0.39 +0.1
5,518,959 + PFLU_RS24650 0.39 +0.5
5,518,959 + PFLU_RS24650 0.39 +1.0
5,518,959 + PFLU_RS24650 0.39 +0.5
5,518,959 + PFLU_RS24650 0.39 +1.0
5,518,959 + PFLU_RS24650 0.39 +1.4
5,518,959 + PFLU_RS24650 0.39 +0.5
5,518,959 + PFLU_RS24650 0.39 -0.4
5,518,959 + PFLU_RS24650 0.39 -0.9
5,518,960 - PFLU_RS24650 0.39 -0.8
5,518,960 - PFLU_RS24650 0.39 -1.0
5,518,960 - PFLU_RS24650 0.39 +1.2
5,518,960 - PFLU_RS24650 0.39 -0.1
5,518,960 - PFLU_RS24650 0.39 +0.7
5,518,960 - PFLU_RS24650 0.39 -1.4
5,518,960 - PFLU_RS24650 0.39 -1.0
5,518,960 - PFLU_RS24650 0.39 +1.6
5,518,960 - PFLU_RS24650 0.39 +0.4
5,518,960 - PFLU_RS24650 0.39 +0.7
5,518,960 - PFLU_RS24650 0.39 +0.1
5,518,961 + PFLU_RS24650 0.39 +0.2
5,518,961 + PFLU_RS24650 0.39 -0.0
5,518,961 + PFLU_RS24650 0.39 +0.1
5,518,961 + PFLU_RS24650 0.39 -0.3
5,518,961 + PFLU_RS24650 0.39 +0.8
5,518,961 + PFLU_RS24650 0.39 -0.2
5,518,961 + PFLU_RS24650 0.39 +0.8
5,518,961 + PFLU_RS24650 0.39 +0.9
5,518,961 + PFLU_RS24650 0.39 +0.8
5,518,962 - PFLU_RS24650 0.39 +0.9
5,518,962 - PFLU_RS24650 0.39 +3.4
5,518,962 - PFLU_RS24650 0.39 -0.6
5,518,962 - PFLU_RS24650 0.39 +0.4
5,518,962 - PFLU_RS24650 0.39 +0.0
5,518,962 - PFLU_RS24650 0.39 -0.2
5,518,962 - PFLU_RS24650 0.39 +0.9
5,518,962 - PFLU_RS24650 0.39 -0.8
5,518,962 - PFLU_RS24650 0.39 +1.0
5,518,962 - PFLU_RS24650 0.39 +1.1
5,518,962 - PFLU_RS24650 0.39 +1.0
5,518,962 - PFLU_RS24650 0.39 +0.7
5,519,010 + PFLU_RS24650 0.44 -1.9
5,519,107 - PFLU_RS24650 0.53 -1.2
5,519,107 - PFLU_RS24650 0.53 +0.5
5,519,107 - PFLU_RS24650 0.53 -0.7
5,519,107 - PFLU_RS24650 0.53 +0.7
5,519,107 - PFLU_RS24650 0.53 +0.7
5,519,305 + PFLU_RS24650 0.73 +1.4
5,519,305 + PFLU_RS24650 0.73 +1.0
5,519,306 - PFLU_RS24650 0.73 +1.4
5,519,306 - PFLU_RS24650 0.73 +1.3
5,519,306 - PFLU_RS24650 0.73 -0.8
5,519,306 - PFLU_RS24650 0.73 +0.6
5,519,318 + PFLU_RS24650 0.74 +0.2
5,519,318 + PFLU_RS24650 0.74 +0.8
5,519,491 + +0.1
5,519,491 + +0.3
5,519,491 + +0.1
5,519,491 + +1.4
5,519,492 - -0.3
5,519,492 - +0.3
5,519,604 + +0.8
5,519,605 - -1.0
5,519,605 - -0.5
5,519,628 + +0.1
5,519,628 + +0.2
5,519,628 + +0.6
5,519,628 + +0.4
5,519,628 + +1.5
5,519,629 - +1.4
5,519,629 - -0.6
5,519,629 - -0.6
5,519,629 - -0.4
5,520,111 + PFLU_RS24655 0.20 -0.6
5,520,112 - PFLU_RS24655 0.20 +1.7
5,520,140 + PFLU_RS24655 0.21 +1.4
5,520,140 + PFLU_RS24655 0.21 -1.1
5,520,141 - PFLU_RS24655 0.21 +0.4
5,520,141 - PFLU_RS24655 0.21 -0.2
5,520,141 - PFLU_RS24655 0.21 +0.9
5,520,185 + PFLU_RS24655 0.23 -0.5
5,520,186 - PFLU_RS24655 0.23 +0.7
5,520,186 - PFLU_RS24655 0.23 +0.6
5,520,186 - PFLU_RS24655 0.23 +1.1
5,520,378 + PFLU_RS24655 0.30 -1.6

Or see this region's nucleotide sequence