Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21860

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,921,139	+		PFLU_RS21850	0.87	+1.2
4,921,139	+		PFLU_RS21850	0.87	-0.3
4,921,139	+		PFLU_RS21850	0.87	+0.1
4,921,139	+		PFLU_RS21850	0.87	+0.1
4,921,139	+		PFLU_RS21850	0.87	+0.2
4,921,139	+		PFLU_RS21850	0.87	+0.1
4,921,139	+		PFLU_RS21850	0.87	-0.2
4,921,139	+		PFLU_RS21850	0.87	-1.6
4,921,140	-		PFLU_RS21850	0.87	+0.1
4,921,142	+		PFLU_RS21850	0.87	+0.4
4,921,142	+		PFLU_RS21850	0.87	-0.1
4,921,142	+		PFLU_RS21850	0.87	+0.3
4,921,143	-		PFLU_RS21850	0.87	+1.6
4,921,143	-		PFLU_RS21850	0.87	+0.6
4,921,143	-		PFLU_RS21850	0.87	-0.9
4,921,221	-				+0.6
4,921,221	-				-0.4
4,921,221	-				+0.0
4,921,221	-				+0.5
4,921,221	-				+0.5
4,921,221	-				+1.2
4,921,237	+				+0.0
4,921,238	-				-0.0
4,921,238	-				+1.0
4,921,238	-				-0.6
4,921,283	+				-0.4
4,921,283	+				-0.0
4,921,284	-				-0.8
4,921,298	-				+0.5
4,921,349	+				-0.4
4,921,349	+				-0.8
4,921,350	-				+0.3
4,921,350	-				-0.6
4,921,362	+		PFLU_RS21855	0.10	+0.5
4,921,362	+		PFLU_RS21855	0.10	-2.8
4,921,504	-		PFLU_RS21855	0.28	+0.7
4,921,713	+		PFLU_RS21855	0.55	+1.8
4,921,713	+		PFLU_RS21855	0.55	+0.4
4,921,713	+		PFLU_RS21855	0.55	+0.4
4,921,714	-		PFLU_RS21855	0.55	-0.1
4,921,727	+		PFLU_RS21855	0.57	+0.2
4,921,727	+		PFLU_RS21855	0.57	+0.5
4,921,727	+		PFLU_RS21855	0.57	+0.3
4,921,728	-		PFLU_RS21855	0.57	+0.1
4,921,728	-		PFLU_RS21855	0.57	+0.5
4,921,728	-		PFLU_RS21855	0.57	+0.0
4,921,734	+		PFLU_RS21855	0.58	+0.3
4,921,734	+		PFLU_RS21855	0.58	+0.5
4,921,734	+		PFLU_RS21855	0.58	+0.7
4,921,734	+		PFLU_RS21855	0.58	+0.6
4,921,734	+		PFLU_RS21855	0.58	+0.2
4,921,735	-		PFLU_RS21855	0.58	+0.5
4,921,735	-		PFLU_RS21855	0.58	+0.5
4,921,735	-		PFLU_RS21855	0.58	+0.9
4,921,735	-		PFLU_RS21855	0.58	-0.1
4,921,735	-		PFLU_RS21855	0.58	+0.3
4,921,735	-		PFLU_RS21855	0.58	+0.8
4,921,735	-		PFLU_RS21855	0.58	+0.2
4,921,931	+		PFLU_RS21855	0.83	-2.9
4,921,931	+		PFLU_RS21855	0.83	-0.4
4,921,932	-		PFLU_RS21855	0.83	+0.5
4,921,932	-		PFLU_RS21855	0.83	-0.7
4,921,932	-		PFLU_RS21855	0.83	+0.6
4,921,932	-		PFLU_RS21855	0.83	+0.3
4,921,981	+		PFLU_RS21855	0.89	+0.3
4,921,981	+		PFLU_RS21855	0.89	-0.4
4,921,981	+		PFLU_RS21855	0.89	-0.0
4,921,981	+		PFLU_RS21855	0.89	+0.5
4,921,981	+		PFLU_RS21855	0.89	-0.2
4,921,981	+		PFLU_RS21855	0.89	+0.4
4,921,982	-		PFLU_RS21855	0.89	+0.6
4,921,982	-		PFLU_RS21855	0.89	+1.2
4,921,982	-		PFLU_RS21855	0.89	-0.3
4,921,982	-		PFLU_RS21855	0.89	+0.5
4,921,982	-		PFLU_RS21855	0.89	+0.5
4,922,054	-				-0.1
4,922,054	-				+0.7
4,922,054	-				+0.8
4,922,054	-				-0.2
4,922,113	+				+0.4
4,922,113	+				+0.2
4,922,113	+				-1.7
4,922,113	+				+0.3
4,922,114	-				-0.7
4,922,114	-				-0.8
4,922,114	-				-0.2
4,922,114	-				+0.2
4,922,114	-				-0.4
4,922,114	-				-0.0
4,922,117	+				+1.1
4,922,117	+				-0.5
4,922,118	-				+0.2
4,922,118	-				+0.3
4,922,351	+		PFLU_RS21860	0.30	+1.2
4,922,351	+		PFLU_RS21860	0.30	+0.5
4,922,351	+		PFLU_RS21860	0.30	+0.6
4,922,351	+		PFLU_RS21860	0.30	+0.8
4,922,352	-		PFLU_RS21860	0.30	+1.0
4,922,352	-		PFLU_RS21860	0.30	-1.4
4,922,352	-		PFLU_RS21860	0.30	-0.1
4,922,352	-		PFLU_RS21860	0.30	+1.0
4,922,352	-		PFLU_RS21860	0.30	+1.2
4,922,352	-		PFLU_RS21860	0.30	+0.4
4,922,352	-		PFLU_RS21860	0.30	+1.3
4,922,575	+		PFLU_RS21860	0.60	+0.5
4,922,575	+		PFLU_RS21860	0.60	+0.4
4,922,575	+		PFLU_RS21860	0.60	+1.2
4,922,575	+		PFLU_RS21860	0.60	+0.4
4,922,575	+		PFLU_RS21860	0.60	+0.7
4,922,576	-		PFLU_RS21860	0.60	+0.7
4,922,576	-		PFLU_RS21860	0.60	+0.9
4,922,576	-		PFLU_RS21860	0.60	-0.2
4,922,576	-		PFLU_RS21860	0.60	+1.4
4,922,576	-		PFLU_RS21860	0.60	+0.1
4,922,576	-		PFLU_RS21860	0.60	+0.4
4,922,854	+				+0.2
4,922,854	+				+0.7
4,922,854	+				+0.0
4,922,854	+				+0.3
4,922,854	+				+0.8
4,922,854	+				+0.4
4,922,854	+				+0.2
4,922,854	+				+0.4
4,922,854	+				+0.7
4,922,854	+				-0.4
4,922,854	+				+0.7
4,922,854	+				+1.0
4,922,854	+				+0.0
4,922,854	+				+0.5
4,922,854	+				+0.8
4,922,854	+				+0.6
4,922,854	+				+0.4
4,922,854	+				-0.5
4,922,854	+				+0.3
4,922,855	-				-0.0
4,922,855	-				+0.9
4,922,855	-				-0.3
4,922,855	-				+0.4
4,922,855	-				+2.8
4,922,855	-				+0.1
4,922,855	-				-0.1
4,922,855	-				+0.7
4,922,855	-				+0.2
4,922,855	-				-0.0
4,922,855	-				+0.7
4,922,855	-				-1.0
4,922,860	+				+1.1
4,922,860	+				-0.3
4,922,860	+				+1.2
4,922,860	+				-0.9
4,922,860	+				+0.4
4,922,860	+				+0.3
4,922,860	+				+1.0
4,922,860	+				-0.1
4,922,860	+				-0.1
4,922,860	+				-0.5
4,922,860	+				-0.2
4,922,860	+				-0.4
4,922,860	+				+0.5
4,922,860	+				-1.1
4,922,860	+				-0.1
4,922,860	+				+0.6
4,922,860	+				+0.7
4,922,860	+				+0.2
4,922,860	+				+0.3
4,922,860	+				+0.0
4,922,860	+				-0.6
4,922,860	+				+0.3
4,922,860	+				+0.7
4,922,860	+				+0.8
4,922,860	+				+0.3
4,922,860	+				+0.1
4,922,860	+				+0.2
4,922,860	+				+0.1
4,922,861	-				+1.7
4,922,861	-				+0.3
4,922,861	-				+0.5
4,922,861	-				-0.1
4,922,861	-				+0.4
4,922,861	-				+0.8
4,922,861	-				+0.6
4,922,861	-				+1.6
4,922,861	-				+0.3
4,922,861	-				+0.3
4,922,861	-				+0.6
4,922,861	-				+0.5
4,922,861	-				+1.3
4,922,861	-				+0.1
4,922,861	-				+0.0
4,922,861	-				+0.2
4,922,861	-				+0.2
4,922,861	-				+0.3
4,922,861	-				+0.7
4,922,861	-				+0.7
4,922,861	-				-2.1
4,922,861	-				+0.4
4,922,861	-				+0.3
4,922,861	-				+1.0
4,922,861	-				+0.3
4,922,861	-				-0.9
4,922,861	-				+0.5
4,922,861	-				+0.1
4,922,861	-				+0.9
4,922,861	-				-0.9
4,922,861	-				+0.3
4,922,912	+				+0.4
4,922,913	-				+0.1
4,922,925	+				+2.3
4,922,925	+				-0.1
4,922,926	-				-0.8
4,922,993	+				+0.1
4,922,993	+				-0.1
4,922,994	-				+1.1
4,922,994	-				+1.0
4,922,994	-				+0.2
4,922,994	-				-0.9
4,923,037	+				-0.4
4,923,037	+				-0.8
4,923,037	+				+0.2
4,923,038	-				-1.6
4,923,038	-				-0.5
4,923,038	-				+0.1
4,923,038	-				+0.3
4,923,038	-				+0.8
4,923,038	-				-1.4
4,923,098	+				-0.3
4,923,098	+				+0.4
4,923,098	+				+1.2
4,923,098	+				+0.5
4,923,098	+				-0.4
4,923,099	-				-0.7
4,923,099	-				+1.5
4,923,099	-				+0.9
4,923,099	-				-0.0
4,923,099	-				+0.2
4,923,099	-				-1.2
4,923,099	-				+1.2
4,923,219	+				+1.2
4,923,219	+				+0.3
4,923,219	+				-0.2
4,923,219	+				-1.2
4,923,220	-				+0.6
4,923,220	-				-0.0
4,923,220	-				-0.9
4,923,220	-				-0.6
4,923,220	-				-0.6
4,923,223	+				+0.4
4,923,223	+				+0.1
4,923,223	+				-0.3
4,923,223	+				-1.2
4,923,223	+				-0.7
4,923,224	-				-0.2
4,923,226	+				+0.6
4,923,227	-				-0.5
4,923,227	-				+0.8
4,923,324	+				-1.1
4,923,324	+				+1.2
4,923,324	+				-0.1
4,923,324	+				+2.0
4,923,324	+				-1.1
4,923,324	+				+0.0
4,923,324	+				+0.6
4,923,324	+				+0.9
4,923,324	+				-0.4
4,923,324	+				+1.2
4,923,324	+				+1.2
4,923,324	+				+0.1
4,923,324	+				-0.7
4,923,325	-				-1.0
4,923,325	-				-0.2
4,923,325	-				-1.4
4,923,325	-				-1.3
4,923,325	-				+0.4
4,923,325	-				-0.5
4,923,325	-				-0.2
4,923,325	-				+0.1
4,923,325	-				+0.1
4,923,325	-				-0.1
4,923,325	-				-0.0
4,923,325	-				-0.8
4,923,325	-				-2.6
4,923,325	-				+0.4
4,923,325	-				+0.9
4,923,325	-				+0.1
4,923,325	-				-0.1
4,923,326	+				-0.4
4,923,326	+				+0.3
4,923,326	+				-0.5
4,923,326	+				+1.0
4,923,326	+				-0.7
4,923,326	+				+0.4
4,923,326	+				-0.9
4,923,326	+				+1.4
4,923,326	+				-1.1
4,923,326	+				+0.9
4,923,326	+				+0.8
4,923,326	+				-0.3
4,923,326	+				+1.9
4,923,326	+				-0.6
4,923,326	+				-0.1
4,923,326	+				-0.2
4,923,326	+				+0.3
4,923,326	+				-0.4
4,923,326	+				-0.6
4,923,326	+				-1.2
4,923,326	+				+1.5
4,923,326	+				+0.6
4,923,326	+				+0.5
4,923,326	+				+1.0
4,923,326	+				-0.4
4,923,326	+				-2.0
4,923,326	+				-0.5
4,923,326	+				+1.1
4,923,326	+				-1.0
4,923,326	+				-0.1
4,923,326	+				-0.4
4,923,327	-				+0.8
4,923,327	-				+0.5
4,923,327	-				-1.2
4,923,327	-				+0.7
4,923,327	-				+1.5
4,923,327	-				+0.4
4,923,327	-				-0.6
4,923,327	-				-1.2
4,923,327	-				+0.6
4,923,327	-				+0.1
4,923,327	-				-0.1
4,923,327	-				-0.6
4,923,327	-				+0.1
4,923,327	-				+0.2
4,923,327	-				-0.4
4,923,327	-				+0.2
4,923,327	-				+0.2
4,923,327	-				+0.3
4,923,327	-				-0.3
4,923,327	-				+0.5
4,923,327	-				-1.2
4,923,327	-				-0.1
4,923,327	-				-1.5
4,923,327	-				-0.4
4,923,327	-				-1.4
4,923,327	-				-0.4
4,923,327	-				-0.0
4,923,327	-				+0.8
4,923,327	-				-1.4
4,923,327	-				-1.1
4,923,417	+		PFLU_RS21865	0.13	+0.2
4,923,433	+		PFLU_RS21865	0.14	-1.4
4,923,433	+		PFLU_RS21865	0.14	-0.8
4,923,433	+		PFLU_RS21865	0.14	+0.5
4,923,434	-		PFLU_RS21865	0.14	+1.1
4,923,434	-		PFLU_RS21865	0.14	+0.3
4,923,434	-		PFLU_RS21865	0.14	-0.1
4,923,434	-		PFLU_RS21865	0.14	-1.2
4,923,522	+		PFLU_RS21865	0.19	-2.1
4,923,522	+		PFLU_RS21865	0.19	+0.2
4,923,522	+		PFLU_RS21865	0.19	-0.1
4,923,522	+		PFLU_RS21865	0.19	-1.4
4,923,523	-		PFLU_RS21865	0.20	-0.6
4,923,523	-		PFLU_RS21865	0.20	+0.3
4,923,523	-		PFLU_RS21865	0.20	+1.4
4,923,523	-		PFLU_RS21865	0.20	-1.8
4,923,523	-		PFLU_RS21865	0.20	+0.2
4,923,523	-		PFLU_RS21865	0.20	+0.2
4,923,523	-		PFLU_RS21865	0.20	-2.1
4,923,523	-		PFLU_RS21865	0.20	+1.8
4,923,652	+		PFLU_RS21865	0.28	-0.5
4,923,652	+		PFLU_RS21865	0.28	+2.2
4,923,652	+		PFLU_RS21865	0.28	+0.1
4,923,653	-		PFLU_RS21865	0.28	+1.3
4,923,653	-		PFLU_RS21865	0.28	-1.1
4,923,653	-		PFLU_RS21865	0.28	+0.0
4,923,653	-		PFLU_RS21865	0.28	-0.5
4,923,681	+		PFLU_RS21865	0.30	+0.3
4,923,681	+		PFLU_RS21865	0.30	-0.2
4,923,682	-		PFLU_RS21865	0.30	-0.9
4,923,682	-		PFLU_RS21865	0.30	+1.0
4,923,762	+		PFLU_RS21865	0.35	+0.9
4,923,762	+		PFLU_RS21865	0.35	+1.0
4,923,762	+		PFLU_RS21865	0.35	-0.9
4,923,763	-		PFLU_RS21865	0.35	-0.0
4,923,763	-		PFLU_RS21865	0.35	+1.2
4,923,782	+		PFLU_RS21865	0.36	+0.6
4,923,783	-		PFLU_RS21865	0.36	-0.2