Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20545

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,624,809	-				+0.2
4,624,809	-				-0.0
4,624,809	-				+0.5
4,624,809	-				+0.1
4,624,809	-				+0.4
4,624,868	-				+0.1
4,624,868	-				+1.4
4,624,868	-				-0.9
4,624,868	-				-0.5
4,624,868	-				+0.1
4,624,868	-				+0.5
4,624,868	-				+0.3
4,624,868	-				+1.1
4,624,868	-				+1.5
4,624,868	-				-0.2
4,624,950	-				+1.1
4,624,960	-				-1.0
4,624,960	-				+0.3
4,624,960	-				-1.4
4,624,960	-				+0.0
4,624,960	-				+0.0
4,624,960	-				+0.6
4,624,960	-				-1.9
4,624,960	-				+1.8
4,624,960	-				+0.1
4,624,960	-				-0.3
4,624,960	-				-1.0
4,624,960	-				+0.0
4,624,960	-				+0.7
4,624,960	-				+0.5
4,624,960	-				+0.7
4,624,960	-				+1.7
4,624,960	-				+1.6
4,624,964	-				-0.3
4,624,964	-				+0.7
4,624,964	-				+1.1
4,625,070	+		PFLU_RS20540	0.13	-3.6
4,625,070	+		PFLU_RS20540	0.13	-0.9
4,625,070	+		PFLU_RS20540	0.13	-0.5
4,625,070	+		PFLU_RS20540	0.13	-1.7
4,625,070	+		PFLU_RS20540	0.13	-2.6
4,625,070	+		PFLU_RS20540	0.13	-0.5
4,625,071	-		PFLU_RS20540	0.13	-2.3
4,625,071	-		PFLU_RS20540	0.13	+0.1
4,625,095	+		PFLU_RS20540	0.17	-1.2
4,625,095	+		PFLU_RS20540	0.17	-1.9
4,625,096	-		PFLU_RS20540	0.17	-0.5
4,625,096	-		PFLU_RS20540	0.17	-2.1
4,625,096	-		PFLU_RS20540	0.17	-2.8
4,625,096	-		PFLU_RS20540	0.17	-1.7
4,625,096	-		PFLU_RS20540	0.17	-4.1
4,625,096	-		PFLU_RS20540	0.17	-3.6
4,625,096	-		PFLU_RS20540	0.17	-3.4
4,625,103	+		PFLU_RS20540	0.18	-0.5
4,625,103	+		PFLU_RS20540	0.18	-1.2
4,625,103	+		PFLU_RS20540	0.18	-0.9
4,625,103	+		PFLU_RS20540	0.18	-1.5
4,625,103	+		PFLU_RS20540	0.18	-1.9
4,625,103	+		PFLU_RS20540	0.18	-1.2
4,625,104	-		PFLU_RS20540	0.18	-3.0
4,625,104	-		PFLU_RS20540	0.18	-0.9
4,625,104	-		PFLU_RS20540	0.18	-2.3
4,625,104	-		PFLU_RS20540	0.18	-1.7
4,625,104	-		PFLU_RS20540	0.18	-1.9
4,625,233	+		PFLU_RS20540	0.39	-1.7
4,625,233	+		PFLU_RS20540	0.39	-2.3
4,625,233	+		PFLU_RS20540	0.39	-2.2
4,625,233	+		PFLU_RS20540	0.39	-3.0
4,625,233	+		PFLU_RS20540	0.39	-0.7
4,625,233	+		PFLU_RS20540	0.39	-0.9
4,625,233	+		PFLU_RS20540	0.39	-0.9
4,625,234	-		PFLU_RS20540	0.39	-0.9
4,625,234	-		PFLU_RS20540	0.39	-3.9
4,625,234	-		PFLU_RS20540	0.39	-3.3
4,625,234	-		PFLU_RS20540	0.39	-3.3
4,625,234	-		PFLU_RS20540	0.39	-2.6
4,625,266	+		PFLU_RS20540	0.44	-1.2
4,625,266	+		PFLU_RS20540	0.44	-2.1
4,625,267	-		PFLU_RS20540	0.44	-3.6
4,625,267	-		PFLU_RS20540	0.44	-3.1
4,625,267	-		PFLU_RS20540	0.44	-1.5
4,625,321	+		PFLU_RS20540	0.52	-2.2
4,625,321	+		PFLU_RS20540	0.52	-1.2
4,625,321	+		PFLU_RS20540	0.52	-0.5
4,625,321	+		PFLU_RS20540	0.52	-2.9
4,625,321	+		PFLU_RS20540	0.52	-1.9
4,625,321	+		PFLU_RS20540	0.52	-1.2
4,625,322	-		PFLU_RS20540	0.53	-0.9
4,625,322	-		PFLU_RS20540	0.53	-3.1
4,625,322	-		PFLU_RS20540	0.53	-3.0
4,625,322	-		PFLU_RS20540	0.53	-2.7
4,625,323	+		PFLU_RS20540	0.53	-2.3
4,625,323	+		PFLU_RS20540	0.53	-1.9
4,625,323	+		PFLU_RS20540	0.53	-0.9
4,625,323	+		PFLU_RS20540	0.53	-2.8
4,625,323	+		PFLU_RS20540	0.53	-2.3
4,625,323	+		PFLU_RS20540	0.53	-1.2
4,625,323	+		PFLU_RS20540	0.53	-2.6
4,625,324	-		PFLU_RS20540	0.53	-1.9
4,625,324	-		PFLU_RS20540	0.53	-1.7
4,625,324	-		PFLU_RS20540	0.53	-3.0
4,625,335	+		PFLU_RS20540	0.55	-0.9
4,625,335	+		PFLU_RS20540	0.55	-2.5
4,625,336	-		PFLU_RS20540	0.55	-3.5
4,625,381	+		PFLU_RS20540	0.62	+0.1
4,625,381	+		PFLU_RS20540	0.62	-1.2
4,625,381	+		PFLU_RS20540	0.62	-0.5
4,625,382	-		PFLU_RS20540	0.62	-1.2
4,625,524	+		PFLU_RS20540	0.85	+0.1
4,625,525	-		PFLU_RS20540	0.85	-1.2
4,625,525	-		PFLU_RS20540	0.85	-4.2
4,625,525	-		PFLU_RS20540	0.85	-3.1
4,625,580	+				+0.1
4,625,580	+				-1.2
4,625,580	+				-1.2
4,625,581	-				-2.6
4,625,581	-				-1.9
4,625,581	-				-3.8
4,625,581	-				-3.3
4,625,581	-				-1.2
4,625,665	+				+0.1
4,625,763	-				-1.5
4,625,780	+		PFLU_RS20545	0.11	-1.3
4,625,780	+		PFLU_RS20545	0.11	-2.1
4,625,781	-		PFLU_RS20545	0.12	-1.6
4,625,781	-		PFLU_RS20545	0.12	-2.5
4,625,781	-		PFLU_RS20545	0.12	-3.6
4,625,781	-		PFLU_RS20545	0.12	-2.0
4,626,149	+		PFLU_RS20545	0.56	-1.2
4,626,149	+		PFLU_RS20545	0.56	-3.0
4,626,149	+		PFLU_RS20545	0.56	-1.2
4,626,149	+		PFLU_RS20545	0.56	-3.5
4,626,150	-		PFLU_RS20545	0.56	-1.9
4,626,150	-		PFLU_RS20545	0.56	-0.9
4,626,150	-		PFLU_RS20545	0.56	-1.7
4,626,158	+		PFLU_RS20545	0.57	-1.5
4,626,158	+		PFLU_RS20545	0.57	-2.2
4,626,158	+		PFLU_RS20545	0.57	-2.5
4,626,158	+		PFLU_RS20545	0.57	-1.7
4,626,158	+		PFLU_RS20545	0.57	-1.7
4,626,158	+		PFLU_RS20545	0.57	-3.2
4,626,158	+		PFLU_RS20545	0.57	-0.5
4,626,159	-		PFLU_RS20545	0.57	-1.7
4,626,159	-		PFLU_RS20545	0.57	-0.5
4,626,159	-		PFLU_RS20545	0.57	-3.8
4,626,159	-		PFLU_RS20545	0.57	-2.3
4,626,159	-		PFLU_RS20545	0.57	-0.2
4,626,159	-		PFLU_RS20545	0.57	-1.2
4,626,159	-		PFLU_RS20545	0.57	-1.1
4,626,159	-		PFLU_RS20545	0.57	-1.2
4,626,252	+		PFLU_RS20545	0.69	-1.6
4,626,253	-		PFLU_RS20545	0.69	-3.6
4,626,255	+		PFLU_RS20545	0.69	-1.3
4,626,255	+		PFLU_RS20545	0.69	-2.3
4,626,255	+		PFLU_RS20545	0.69	-0.9
4,626,255	+		PFLU_RS20545	0.69	-0.9
4,626,256	-		PFLU_RS20545	0.69	-0.5
4,626,256	-		PFLU_RS20545	0.69	-0.9
4,626,256	-		PFLU_RS20545	0.69	-1.6
4,626,467	+				+1.7
4,626,467	+				-2.1
4,626,467	+				-0.5
4,626,467	+				-1.8
4,626,467	+				-3.3
4,626,468	-				-2.3
4,626,468	-				-3.1
4,626,468	-				-1.1
4,626,468	-				-1.9
4,626,468	-				-2.5
4,626,492	-				+0.1
4,626,525	+				-1.7
4,626,525	+				+2.1
4,626,525	+				-1.7
4,626,525	+				-1.1
4,626,525	+				-2.1
4,626,526	-				-2.9
4,626,526	-				-2.1
4,626,526	-				-1.1
4,626,526	-				-0.9
4,626,526	-				-0.1
4,626,526	-				-0.9
4,626,529	+				-0.0
4,626,529	+				-0.9
4,626,529	+				+0.5
4,626,529	+				-0.5
4,626,529	+				-1.0
4,626,529	+				-0.5
4,626,529	+				-1.7
4,626,529	+				+0.3
4,626,529	+				-1.3
4,626,530	-				+0.9
4,626,530	-				+0.3
4,626,530	-				-1.3
4,626,530	-				-0.7
4,626,530	-				-3.0
4,626,530	-				-2.2
4,626,530	-				+0.1
4,626,530	-				+1.1
4,626,531	+				-1.2
4,626,531	+				-2.2
4,626,532	-				-0.7
4,626,532	-				-0.5
4,626,532	-				-0.9
4,626,532	-				-1.2
4,626,532	-				-0.2
4,626,532	-				-2.8
4,626,532	-				-1.5
4,626,532	-				-0.5
4,626,576	-				+1.0
4,626,578	+				-0.9
4,626,578	+				-2.1
4,626,578	+				+0.1
4,626,578	+				-1.5
4,626,578	+				-0.0
4,626,578	+				-1.0
4,626,578	+				+0.5
4,626,578	+				+0.2
4,626,578	+				+0.6
4,626,578	+				+0.6
4,626,578	+				+1.0
4,626,578	+				-0.5
4,626,578	+				-1.9
4,626,578	+				+0.1
4,626,578	+				-1.9
4,626,578	+				-0.1
4,626,578	+				-2.3
4,626,578	+				-0.3
4,626,578	+				+0.9
4,626,579	-				-0.4
4,626,579	-				+0.1
4,626,579	-				-0.8
4,626,579	-				+0.7
4,626,579	-				+0.6
4,626,579	-				-0.8
4,626,579	-				+0.9
4,626,579	-				-1.5
4,626,579	-				-0.7
4,626,579	-				+0.2
4,626,579	-				+0.4
4,626,580	+				+1.1
4,626,580	+				+0.4
4,626,580	+				+0.2
4,626,580	+				-1.0
4,626,580	+				+0.0
4,626,581	-				+1.0
4,626,581	-				+1.4
4,626,581	-				-0.8
4,626,581	-				-1.3
4,626,581	-				+0.1
4,626,581	-				+0.8
4,626,590	+				-2.1
4,626,590	+				+0.3
4,626,590	+				-0.2
4,626,591	-				+0.5
4,626,612	+				-0.9
4,626,612	+				-0.2
4,626,613	-				-0.3
4,626,667	-				+0.3
4,626,667	-				+0.4
4,626,667	-				-0.4
4,626,681	-				-0.9
4,626,724	+				-0.1
4,626,724	+				-0.3
4,626,724	+				-0.1
4,626,724	+				+0.3
4,626,724	+				+1.6
4,626,724	+				+0.9
4,626,724	+				+0.6
4,626,724	+				-0.1
4,626,739	+				+1.3
4,626,739	+				-0.3
4,626,740	-				+0.3
4,626,744	+				+0.1
4,626,744	+				-0.1
4,626,744	+				-0.1
4,626,744	+				+0.0
4,626,744	+				+0.3
4,626,745	-				+0.6
4,626,745	-				-0.5
4,626,745	-				-0.6
4,626,745	-				-0.6
4,626,795	+				-0.3
4,626,795	+				-1.2
4,626,799	+				-0.7
4,626,799	+				-0.9
4,626,800	-				+0.7
4,626,800	-				-0.2
4,626,903	+				-0.1
4,626,903	+				-0.2
4,626,903	+				-0.7
4,626,903	+				+0.1
4,626,903	+				-2.3
4,626,903	+				-0.9
4,626,903	+				-0.3
4,626,903	+				+1.1
4,626,903	+				-1.6
4,626,903	+				-1.0
4,626,903	+				-0.5
4,626,903	+				-1.3
4,626,903	+				-0.1
4,626,903	+				-0.0
4,626,904	-				-0.9
4,626,904	-				-0.2
4,626,904	-				+0.2
4,626,904	-				-1.1
4,626,904	-				+0.3
4,626,904	-				+0.7
4,626,904	-				+0.4
4,626,904	-				-0.1
4,626,904	-				-0.5
4,626,904	-				+0.9
4,626,904	-				+0.3
4,626,904	-				-0.1
4,626,904	-				-0.1
4,626,904	-				+0.3
4,626,904	-				-0.2
4,627,471	+		PFLU_RS20550	0.26	-0.9
4,627,476	+		PFLU_RS20550	0.27	+0.3
4,627,476	+		PFLU_RS20550	0.27	+0.3
4,627,476	+		PFLU_RS20550	0.27	+0.1
4,627,476	+		PFLU_RS20550	0.27	-0.5
4,627,476	+		PFLU_RS20550	0.27	+0.1
4,627,476	+		PFLU_RS20550	0.27	-0.8
4,627,476	+		PFLU_RS20550	0.27	-1.1
4,627,476	+		PFLU_RS20550	0.27	+1.0
4,627,477	-		PFLU_RS20550	0.27	-1.1
4,627,477	-		PFLU_RS20550	0.27	-0.5
4,627,477	-		PFLU_RS20550	0.27	-0.2
4,627,477	-		PFLU_RS20550	0.27	-0.1
4,627,477	-		PFLU_RS20550	0.27	+0.3
4,627,477	-		PFLU_RS20550	0.27	+0.0
4,627,477	-		PFLU_RS20550	0.27	+1.5
4,627,477	-		PFLU_RS20550	0.27	-0.1
4,627,477	-		PFLU_RS20550	0.27	+0.1