Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20260

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,581,526	+		PFLU_RS20245	0.85	-0.5
4,581,527	-		PFLU_RS20245	0.86	-0.6
4,581,527	-		PFLU_RS20245	0.86	+0.4
4,581,600	+				-2.2
4,581,600	+				+1.1
4,581,600	+				+2.1
4,581,600	+				+0.4
4,581,601	-				+0.2
4,581,601	-				-0.3
4,581,601	-				+1.1
4,581,601	-				+0.8
4,581,629	+				-0.5
4,581,629	+				+0.1
4,581,629	+				-0.3
4,581,629	+				+0.5
4,581,629	+				+0.3
4,581,629	+				+0.6
4,581,630	-				+0.4
4,581,630	-				-1.6
4,581,630	-				-0.0
4,581,711	-		PFLU_RS20250	0.16	+0.7
4,581,711	-		PFLU_RS20250	0.16	+2.1
4,581,720	+		PFLU_RS20250	0.18	-0.1
4,581,720	+		PFLU_RS20250	0.18	-1.5
4,581,720	+		PFLU_RS20250	0.18	-1.2
4,581,721	-		PFLU_RS20250	0.18	+0.7
4,581,721	-		PFLU_RS20250	0.18	+0.1
4,581,721	-		PFLU_RS20250	0.18	-0.6
4,581,721	-		PFLU_RS20250	0.18	-2.1
4,581,721	-		PFLU_RS20250	0.18	+0.3
4,581,835	+		PFLU_RS20250	0.35	-2.1
4,581,836	-		PFLU_RS20250	0.35	-0.1
4,581,836	-		PFLU_RS20250	0.35	+1.1
4,581,836	-		PFLU_RS20250	0.35	-0.3
4,581,868	+		PFLU_RS20250	0.40	+1.6
4,581,868	+		PFLU_RS20250	0.40	+0.4
4,581,868	+		PFLU_RS20250	0.40	-0.2
4,581,868	+		PFLU_RS20250	0.40	+1.1
4,581,869	-		PFLU_RS20250	0.40	-2.2
4,581,869	-		PFLU_RS20250	0.40	+1.7
4,581,869	-		PFLU_RS20250	0.40	+0.1
4,581,869	-		PFLU_RS20250	0.40	-0.2
4,581,869	-		PFLU_RS20250	0.40	-0.5
4,581,869	-		PFLU_RS20250	0.40	-0.1
4,581,869	-		PFLU_RS20250	0.40	+0.6
4,581,869	-		PFLU_RS20250	0.40	-0.1
4,581,869	-		PFLU_RS20250	0.40	-0.6
4,581,869	-		PFLU_RS20250	0.40	-0.6
4,581,869	-		PFLU_RS20250	0.40	+0.3
4,581,869	-		PFLU_RS20250	0.40	+1.3
4,581,881	+		PFLU_RS20250	0.42	+0.0
4,581,882	-		PFLU_RS20250	0.42	+0.1
4,581,882	-		PFLU_RS20250	0.42	+1.3
4,581,902	+		PFLU_RS20250	0.45	+0.6
4,581,904	+		PFLU_RS20250	0.46	+1.5
4,581,904	+		PFLU_RS20250	0.46	-0.3
4,581,904	+		PFLU_RS20250	0.46	+0.5
4,581,904	+		PFLU_RS20250	0.46	+1.1
4,581,904	+		PFLU_RS20250	0.46	+0.1
4,581,904	+		PFLU_RS20250	0.46	-1.5
4,581,904	+		PFLU_RS20250	0.46	+0.4
4,581,904	+		PFLU_RS20250	0.46	-0.8
4,581,904	+		PFLU_RS20250	0.46	+2.1
4,581,904	+		PFLU_RS20250	0.46	-1.1
4,581,904	+		PFLU_RS20250	0.46	+0.3
4,581,904	+		PFLU_RS20250	0.46	+0.4
4,581,904	+		PFLU_RS20250	0.46	-0.9
4,581,905	-		PFLU_RS20250	0.46	-0.9
4,581,905	-		PFLU_RS20250	0.46	+1.4
4,581,905	-		PFLU_RS20250	0.46	+0.9
4,581,905	-		PFLU_RS20250	0.46	+0.0
4,581,905	-		PFLU_RS20250	0.46	+0.1
4,581,905	-		PFLU_RS20250	0.46	+1.0
4,581,905	-		PFLU_RS20250	0.46	-0.9
4,581,905	-		PFLU_RS20250	0.46	+0.4
4,581,905	-		PFLU_RS20250	0.46	-1.3
4,581,905	-		PFLU_RS20250	0.46	+1.1
4,581,905	-		PFLU_RS20250	0.46	-0.8
4,581,905	-		PFLU_RS20250	0.46	+0.6
4,581,972	+		PFLU_RS20250	0.56	+0.3
4,581,972	+		PFLU_RS20250	0.56	-0.5
4,581,972	+		PFLU_RS20250	0.56	+1.8
4,581,972	+		PFLU_RS20250	0.56	+1.1
4,581,997	+		PFLU_RS20250	0.60	+0.1
4,581,997	+		PFLU_RS20250	0.60	+0.4
4,581,997	+		PFLU_RS20250	0.60	+0.4
4,581,997	+		PFLU_RS20250	0.60	+0.4
4,581,997	+		PFLU_RS20250	0.60	-0.2
4,581,997	+		PFLU_RS20250	0.60	+0.4
4,581,998	-		PFLU_RS20250	0.60	-0.5
4,581,998	-		PFLU_RS20250	0.60	-2.2
4,581,998	-		PFLU_RS20250	0.60	-0.3
4,581,998	-		PFLU_RS20250	0.60	-0.8
4,581,998	-		PFLU_RS20250	0.60	+1.1
4,581,998	-		PFLU_RS20250	0.60	-0.5
4,581,998	-		PFLU_RS20250	0.60	+2.0
4,581,998	-		PFLU_RS20250	0.60	-0.2
4,581,998	-		PFLU_RS20250	0.60	-0.7
4,582,054	+		PFLU_RS20250	0.68	-0.7
4,582,054	+		PFLU_RS20250	0.68	+1.9
4,582,054	+		PFLU_RS20250	0.68	+0.1
4,582,054	+		PFLU_RS20250	0.68	-0.3
4,582,055	-		PFLU_RS20250	0.68	-0.6
4,582,175	+		PFLU_RS20250	0.87	+0.1
4,582,175	+		PFLU_RS20250	0.87	+1.1
4,582,175	+		PFLU_RS20250	0.87	+2.1
4,582,175	+		PFLU_RS20250	0.87	+0.1
4,582,175	+		PFLU_RS20250	0.87	-0.1
4,582,176	-		PFLU_RS20250	0.87	-0.5
4,582,176	-		PFLU_RS20250	0.87	+0.1
4,582,176	-		PFLU_RS20250	0.87	-0.9
4,582,176	-		PFLU_RS20250	0.87	-1.4
4,582,281	+				-0.7
4,582,281	+				+1.6
4,582,281	+				+0.1
4,582,281	+				-1.6
4,582,281	+				+1.1
4,582,282	-				-1.2
4,582,282	-				+0.9
4,582,282	-				+0.7
4,582,282	-				+0.8
4,582,342	+		PFLU_RS20255	0.31	+0.1
4,582,342	+		PFLU_RS20255	0.31	-1.6
4,582,343	-		PFLU_RS20255	0.31	+1.3
4,582,343	-		PFLU_RS20255	0.31	+0.4
4,582,343	-		PFLU_RS20255	0.31	+0.0
4,582,343	-		PFLU_RS20255	0.31	+0.8
4,582,415	+		PFLU_RS20255	0.65	+0.5
4,582,415	+		PFLU_RS20255	0.65	+0.2
4,582,415	+		PFLU_RS20255	0.65	-0.9
4,582,416	-		PFLU_RS20255	0.65	+2.7
4,582,416	-		PFLU_RS20255	0.65	+0.7
4,582,430	+		PFLU_RS20255	0.72	-2.4
4,582,430	+		PFLU_RS20255	0.72	+0.8
4,582,431	-		PFLU_RS20255	0.72	+1.1
4,582,491	+				+0.3
4,582,504	+				-1.2
4,582,505	-				-0.2
4,582,505	-				-0.1
4,582,505	-				-0.1
4,582,505	-				-0.4
4,582,505	-				+1.7
4,582,505	-				+3.1
4,582,505	-				-2.4
4,582,505	-				+0.9
4,582,801	+		PFLU_RS20260	0.63	+1.1
4,582,801	+		PFLU_RS20260	0.63	-1.2
4,582,801	+		PFLU_RS20260	0.63	+0.2
4,582,802	-		PFLU_RS20260	0.63	+0.9
4,582,802	-		PFLU_RS20260	0.63	-0.2
4,582,802	-		PFLU_RS20260	0.63	+1.1
4,582,897	-		PFLU_RS20260	0.83	-1.2
4,582,908	-		PFLU_RS20260	0.85	-1.7
4,582,908	-		PFLU_RS20260	0.85	+0.3
4,582,922	-		PFLU_RS20260	0.88	+0.5
4,582,922	-		PFLU_RS20260	0.88	+1.7
4,583,034	+				+1.4
4,583,034	+				+1.1
4,583,034	+				-0.2
4,583,035	-				+1.2
4,583,035	-				-2.2
4,583,060	+				+0.6
4,583,129	-				-1.1
4,583,177	+				-0.7
4,583,177	+				-1.1
4,583,177	+				+0.1
4,583,177	+				+0.3
4,583,177	+				-1.9
4,583,178	-				+3.7
4,583,178	-				-1.0
4,583,178	-				+0.4
4,583,178	-				-1.1
4,583,178	-				+0.1
4,583,178	-				+0.5
4,583,178	-				+0.3
4,583,178	-				+1.4
4,583,178	-				+1.3
4,583,261	+		PFLU_RS30980	0.29	+1.8
4,583,329	+		PFLU_RS30980	0.49	-1.6
4,583,329	+		PFLU_RS30980	0.49	+0.9
4,583,330	-		PFLU_RS30980	0.49	-1.0
4,583,330	-		PFLU_RS30980	0.49	-0.4
4,583,330	-		PFLU_RS30980	0.49	+1.7
4,583,383	+		PFLU_RS30980	0.65	+1.4
4,583,383	+		PFLU_RS30980	0.65	-1.3
4,583,383	+		PFLU_RS30980	0.65	+0.2
4,583,383	+		PFLU_RS30980	0.65	-0.5
4,583,383	+		PFLU_RS30980	0.65	+0.9
4,583,383	+		PFLU_RS30980	0.65	+0.8
4,583,383	+		PFLU_RS30980	0.65	+0.1
4,583,383	+		PFLU_RS30980	0.65	+1.1
4,583,383	+		PFLU_RS30980	0.65	-0.3
4,583,383	+		PFLU_RS30980	0.65	+0.4
4,583,383	+		PFLU_RS30980	0.65	-0.4
4,583,383	+		PFLU_RS30980	0.65	+0.3
4,583,383	+		PFLU_RS30980	0.65	+1.2
4,583,383	+		PFLU_RS30980	0.65	+0.0
4,583,384	-		PFLU_RS30980	0.65	+2.3
4,583,384	-		PFLU_RS30980	0.65	+0.3
4,583,384	-		PFLU_RS30980	0.65	+0.2
4,583,384	-		PFLU_RS30980	0.65	-1.0
4,583,384	-		PFLU_RS30980	0.65	+1.4
4,583,384	-		PFLU_RS30980	0.65	-0.3
4,583,384	-		PFLU_RS30980	0.65	+1.3
4,583,384	-		PFLU_RS30980	0.65	-2.1
4,583,384	-		PFLU_RS30980	0.65	-2.4
4,583,384	-		PFLU_RS30980	0.65	-0.4
4,583,384	-		PFLU_RS30980	0.65	+1.6
4,583,384	-		PFLU_RS30980	0.65	+1.1
4,583,384	-		PFLU_RS30980	0.65	-1.4
4,583,384	-		PFLU_RS30980	0.65	+0.4
4,583,389	+		PFLU_RS30980	0.67	+1.6
4,583,389	+		PFLU_RS30980	0.67	+0.4
4,583,390	-		PFLU_RS30980	0.67	-0.3
4,583,444	+		PFLU_RS30980	0.83	-0.7
4,583,444	+		PFLU_RS30980	0.83	+1.1
4,583,444	+		PFLU_RS30980	0.83	-0.4
4,583,444	+		PFLU_RS30980	0.83	-1.5
4,583,444	+		PFLU_RS30980	0.83	+0.7
4,583,444	+		PFLU_RS30980	0.83	+0.1
4,583,444	+		PFLU_RS30980	0.83	-1.4
4,583,444	+		PFLU_RS30980	0.83	-1.6
4,583,444	+		PFLU_RS30980	0.83	+0.2
4,583,444	+		PFLU_RS30980	0.83	+0.6
4,583,444	+		PFLU_RS30980	0.83	-0.5
4,583,444	+		PFLU_RS30980	0.83	+0.9
4,583,444	+		PFLU_RS30980	0.83	+0.5
4,583,444	+		PFLU_RS30980	0.83	-0.3
4,583,444	+		PFLU_RS30980	0.83	-1.1
4,583,444	+		PFLU_RS30980	0.83	+0.3
4,583,444	+		PFLU_RS30980	0.83	-0.4
4,583,444	+		PFLU_RS30980	0.83	+0.4
4,583,444	+		PFLU_RS30980	0.83	+0.1
4,583,444	+		PFLU_RS30980	0.83	-2.8
4,583,445	-		PFLU_RS30980	0.83	-0.4
4,583,445	-		PFLU_RS30980	0.83	+1.6
4,583,445	-		PFLU_RS30980	0.83	+0.9
4,583,445	-		PFLU_RS30980	0.83	-0.2
4,583,445	-		PFLU_RS30980	0.83	-1.9
4,583,445	-		PFLU_RS30980	0.83	+0.7
4,583,445	-		PFLU_RS30980	0.83	+0.0
4,583,445	-		PFLU_RS30980	0.83	+0.7
4,583,445	-		PFLU_RS30980	0.83	-0.6
4,583,445	-		PFLU_RS30980	0.83	+0.1
4,583,445	-		PFLU_RS30980	0.83	-0.2
4,583,445	-		PFLU_RS30980	0.83	-0.8
4,583,445	-		PFLU_RS30980	0.83	+2.4
4,583,445	-		PFLU_RS30980	0.83	+0.9
4,583,445	-		PFLU_RS30980	0.83	+2.3
4,583,448	+		PFLU_RS30980	0.84	+0.1
4,583,448	+		PFLU_RS30980	0.84	+0.3
4,583,448	+		PFLU_RS30980	0.84	+0.5
4,583,448	+		PFLU_RS30980	0.84	+0.4
4,583,448	+		PFLU_RS30980	0.84	+1.1
4,583,448	+		PFLU_RS30980	0.84	-0.5
4,583,449	-		PFLU_RS30980	0.84	-0.5
4,583,449	-		PFLU_RS30980	0.84	+0.0
4,583,449	-		PFLU_RS30980	0.84	-0.2
4,583,449	-		PFLU_RS30980	0.84	-1.4
4,583,449	-		PFLU_RS30980	0.84	+0.8
4,583,449	-		PFLU_RS30980	0.84	+0.4
4,583,486	+				+1.1
4,583,486	+				+0.1
4,583,486	+				-0.7
4,583,486	+				-0.7
4,583,486	+				-0.3
4,583,486	+				-0.3
4,583,487	-				+0.3
4,583,487	-				-0.1
4,583,487	-				-0.0
4,583,489	+				-0.9
4,583,489	+				-0.4
4,583,489	+				+0.1
4,583,489	+				-1.0
4,583,489	+				-2.1
4,583,489	+				+0.1
4,583,489	+				+0.3
4,583,489	+				+0.4
4,583,489	+				-0.5
4,583,489	+				+0.3
4,583,489	+				+0.1
4,583,489	+				-0.7
4,583,490	-				-0.4
4,583,490	-				+0.8
4,583,490	-				-0.7
4,583,490	-				-1.2
4,583,490	-				+0.5
4,583,490	-				-0.0
4,583,513	+				+0.1
4,583,513	+				+0.1
4,583,513	+				+1.1
4,583,513	+				+0.1
4,583,513	+				+0.6
4,583,513	+				-0.6
4,583,513	+				-3.4
4,583,513	+				-0.5
4,583,514	-				-0.8
4,583,514	-				-0.5
4,583,514	-				-2.1
4,583,514	-				-0.5
4,583,514	-				-0.0
4,583,514	-				+0.9
4,583,514	-				-0.4
4,583,514	-				+2.9
4,583,533	+		PFLU_RS31315	0.14	+0.2
4,583,533	+		PFLU_RS31315	0.14	-0.2
4,583,533	+		PFLU_RS31315	0.14	+0.2
4,583,534	-		PFLU_RS31315	0.15	+0.3
4,583,545	+		PFLU_RS31315	0.22	-0.0
4,583,545	+		PFLU_RS31315	0.22	+0.1
4,583,545	+		PFLU_RS31315	0.22	+1.4
4,583,639	-		PFLU_RS31315	0.86	-0.5
4,583,639	-		PFLU_RS31315	0.86	+0.5
4,583,639	-		PFLU_RS31315	0.86	+0.1
4,583,639	-		PFLU_RS31315	0.86	-2.4
4,583,698	+		PFLU_RS30985	0.15	+0.4
4,583,699	-		PFLU_RS30985	0.16	+0.2
4,583,699	-		PFLU_RS30985	0.16	-0.1
4,583,850	+		PFLU_RS30985	0.77	+1.5
4,583,907	+				-2.3
4,583,950	+		PFLU_RS20275	0.20	+0.2
4,583,950	+		PFLU_RS20275	0.20	-1.2
4,583,950	+		PFLU_RS20275	0.20	+0.6
4,583,951	-		PFLU_RS20275	0.20	+0.8
4,583,971	+		PFLU_RS20275	0.30	-1.0
4,583,971	+		PFLU_RS20275	0.30	+0.6
4,583,971	+		PFLU_RS20275	0.30	+0.0
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