Experiment: D-Trehalose 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19890 and PFLU_RS19895 overlap by 4 nucleotides PFLU_RS19895 and PFLU_RS19900 overlap by 4 nucleotides PFLU_RS19900 and PFLU_RS19905 overlap by 26 nucleotides PFLU_RS19905 and PFLU_RS19910 overlap by 4 nucleotides
PFLU_RS19890: PFLU_RS19890 - type II secretion system secretin GspD, at 4,502,339 to 4,504,561
_RS19890
PFLU_RS19895: PFLU_RS19895 - general secretion pathway protein GspN, at 4,504,558 to 4,505,082
_RS19895
PFLU_RS19900: PFLU_RS19900 - general secretion pathway protein GspM, at 4,505,079 to 4,505,690
_RS19900
PFLU_RS19905: PFLU_RS19905 - general secretion pathway protein GspL, at 4,505,665 to 4,506,684
_RS19905
PFLU_RS19910: PFLU_RS19910 - hypothetical protein, at 4,506,681 to 4,507,406
_RS19910
Position (kb) 4505
4506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.182 kb on + strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.183 kb on - strand, within PFLU_RS19890 at 4504.552 kb on + strand at 4504.553 kb on - strand at 4505.117 kb on - strand at 4505.225 kb on - strand, within PFLU_RS19900 at 4505.501 kb on + strand, within PFLU_RS19900 at 4505.547 kb on + strand, within PFLU_RS19900 at 4505.547 kb on + strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.548 kb on - strand, within PFLU_RS19900 at 4505.970 kb on - strand, within PFLU_RS19905 at 4506.365 kb on + strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.430 kb on - strand, within PFLU_RS19905 at 4506.484 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C) remove 4,504,182 + PFLU_RS19890 0.83 +0.3 4,504,182 + PFLU_RS19890 0.83 +0.1 4,504,182 + PFLU_RS19890 0.83 +1.6 4,504,182 + PFLU_RS19890 0.83 +0.1 4,504,182 + PFLU_RS19890 0.83 +0.3 4,504,182 + PFLU_RS19890 0.83 -1.7 4,504,182 + PFLU_RS19890 0.83 +0.7 4,504,183 - PFLU_RS19890 0.83 -1.2 4,504,183 - PFLU_RS19890 0.83 +0.7 4,504,183 - PFLU_RS19890 0.83 -0.2 4,504,552 + +0.1 4,504,553 - -0.2 4,505,117 - -1.5 4,505,225 - PFLU_RS19900 0.24 +0.2 4,505,501 + PFLU_RS19900 0.69 +0.5 4,505,547 + PFLU_RS19900 0.76 -0.2 4,505,547 + PFLU_RS19900 0.76 -0.1 4,505,548 - PFLU_RS19900 0.77 -0.2 4,505,548 - PFLU_RS19900 0.77 +0.7 4,505,548 - PFLU_RS19900 0.77 +2.2 4,505,970 - PFLU_RS19905 0.30 -0.3 4,506,365 + PFLU_RS19905 0.69 +0.9 4,506,366 - PFLU_RS19905 0.69 +1.9 4,506,366 - PFLU_RS19905 0.69 +0.2 4,506,366 - PFLU_RS19905 0.69 +1.0 4,506,366 - PFLU_RS19905 0.69 -0.2 4,506,430 - PFLU_RS19905 0.75 +1.2 4,506,484 + PFLU_RS19905 0.80 +0.3 4,506,548 + PFLU_RS19905 0.87 +0.9 4,506,548 + PFLU_RS19905 0.87 -0.3 4,506,548 + PFLU_RS19905 0.87 +0.9 4,506,548 + PFLU_RS19905 0.87 +0.8 4,506,549 - PFLU_RS19905 0.87 +0.2 4,506,549 - PFLU_RS19905 0.87 -1.2 4,506,549 - PFLU_RS19905 0.87 +0.1 4,506,549 - PFLU_RS19905 0.87 -2.2 4,506,549 - PFLU_RS19905 0.87 +0.3 4,506,549 - PFLU_RS19905 0.87 +1.1 4,506,549 - PFLU_RS19905 0.87 +0.9 4,506,549 - PFLU_RS19905 0.87 +0.6 4,506,678 + -1.2 4,506,678 + +0.4 4,506,678 + -0.1 4,506,678 + +0.2 4,506,679 - -0.3 4,506,679 - -0.4 4,506,679 - -0.1 4,506,679 - +0.3 4,506,679 - -1.3 4,506,679 - +1.5
Or see this region's nucleotide sequence