Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19855

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,491,930	+				-0.3
4,491,931	-				+1.2
4,491,931	-				+0.4
4,491,931	-				+0.8
4,491,931	-				-0.3
4,491,931	-				-0.9
4,491,931	-				-1.3
4,491,977	-				+1.3
4,492,010	+				-1.5
4,492,010	+				-0.5
4,492,010	+				+0.6
4,492,010	+				+0.1
4,492,011	-				-0.7
4,492,011	-				-0.2
4,492,011	-				+1.7
4,492,016	+				+0.6
4,492,017	-				+0.9
4,492,017	-				-0.2
4,492,176	+		PFLU_RS19850	0.11	-0.4
4,492,331	-		PFLU_RS19850	0.31	+0.1
4,492,336	+		PFLU_RS19850	0.32	+0.5
4,492,336	+		PFLU_RS19850	0.32	+0.5
4,492,337	-		PFLU_RS19850	0.32	-0.3
4,492,337	-		PFLU_RS19850	0.32	+0.7
4,492,337	-		PFLU_RS19850	0.32	+0.3
4,492,489	+		PFLU_RS19850	0.52	-1.6
4,492,489	+		PFLU_RS19850	0.52	+0.2
4,492,526	-		PFLU_RS19850	0.56	+0.7
4,492,526	-		PFLU_RS19850	0.56	-0.8
4,492,526	-		PFLU_RS19850	0.56	+0.5
4,492,623	-		PFLU_RS19850	0.69	-0.4
4,492,623	-		PFLU_RS19850	0.69	+0.2
4,492,850	-				-0.0
4,492,883	-				+0.6
4,492,957	+		PFLU_RS19855	0.21	+1.0
4,492,958	-		PFLU_RS19855	0.21	-1.5
4,492,958	-		PFLU_RS19855	0.21	+0.7
4,492,958	-		PFLU_RS19855	0.21	+0.2
4,493,278	+				-0.7
4,493,278	+				+0.6
4,493,279	-				-1.5
4,493,279	-				-0.7
4,493,286	+				+1.0
4,493,286	+				+0.7
4,493,287	-				+0.1
4,493,359	-				-1.3
4,493,359	-				+0.5
4,493,377	-				+0.7
4,493,377	-				-1.3
4,493,378	+				-0.1
4,493,379	-				+0.4
4,493,379	-				-0.1
4,493,405	+				-0.8
4,493,406	-				-0.1
4,493,430	+				+0.7
4,493,437	-				-2.0
4,493,577	+				+1.1
4,493,578	-				-0.7
4,493,578	-				+0.5
4,493,578	-				-0.1
4,493,578	-				+0.8
4,493,579	+				+0.5
4,493,579	+				+0.1
4,493,579	+				-0.2
4,493,580	-				+0.1
4,493,618	+				+0.8
4,493,674	+		PFLU_RS30950	0.24	-0.9
4,493,751	+		PFLU_RS30950	0.44	-0.8
4,493,752	-		PFLU_RS30950	0.44	-0.4
4,493,825	+		PFLU_RS30950	0.64	+2.1
4,493,826	-		PFLU_RS30950	0.64	-0.5
4,493,876	+		PFLU_RS30950	0.77	-1.4
4,493,877	-		PFLU_RS30950	0.78	+0.3
4,493,877	-		PFLU_RS30950	0.78	+0.9
4,493,877	-		PFLU_RS30950	0.78	+0.6
4,493,921	+		PFLU_RS30950	0.89	+0.3
4,493,921	+		PFLU_RS30950	0.89	+0.5
4,493,922	-		PFLU_RS30950	0.89	-0.6
4,493,922	-		PFLU_RS30950	0.89	+0.5
4,493,922	-		PFLU_RS30950	0.89	-0.9
4,493,929	+				-0.2
4,493,929	+				-0.2
4,493,929	+				-0.7
4,493,929	+				+0.9
4,493,929	+				-1.0
4,493,929	+				+1.1
4,493,929	+				-0.8
4,493,929	+				-2.1
4,493,929	+				-0.8
4,493,929	+				-0.5
4,493,929	+				+1.1
4,493,929	+				-0.9
4,493,929	+				-1.3
4,493,930	-				-0.3
4,493,930	-				-0.3
4,493,930	-				+0.5
4,493,930	-				+1.5
4,493,930	-				+0.3
4,493,930	-				+0.9
4,493,930	-				-1.5
4,493,930	-				+2.6
4,493,930	-				-0.5
4,493,930	-				-0.9
4,494,147	-		PFLU_RS19860	0.29	+0.3