Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19440

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,395,449	-		PFLU_RS19435	0.41	-0.2
4,395,839	+		PFLU_RS19435	0.69	+1.5
4,395,839	+		PFLU_RS19435	0.69	-0.4
4,395,839	+		PFLU_RS19435	0.69	+0.6
4,395,839	+		PFLU_RS19435	0.69	-0.2
4,395,839	+		PFLU_RS19435	0.69	-0.2
4,395,839	+		PFLU_RS19435	0.69	-0.0
4,395,839	+		PFLU_RS19435	0.69	+0.1
4,395,839	+		PFLU_RS19435	0.69	-0.1
4,395,839	+		PFLU_RS19435	0.69	+0.5
4,395,840	-		PFLU_RS19435	0.69	-0.2
4,395,840	-		PFLU_RS19435	0.69	-0.3
4,395,840	-		PFLU_RS19435	0.69	+0.8
4,395,840	-		PFLU_RS19435	0.69	-0.8
4,395,840	-		PFLU_RS19435	0.69	-1.3
4,395,840	-		PFLU_RS19435	0.69	+0.4
4,395,840	-		PFLU_RS19435	0.69	-0.3
4,395,840	-		PFLU_RS19435	0.69	+0.4
4,395,840	-		PFLU_RS19435	0.69	+0.7
4,395,854	-		PFLU_RS19435	0.70	+0.1
4,395,870	-		PFLU_RS19435	0.71	-0.6
4,395,870	-		PFLU_RS19435	0.71	-0.0
4,395,872	+		PFLU_RS19435	0.72	-0.8
4,395,872	+		PFLU_RS19435	0.72	+0.4
4,395,872	+		PFLU_RS19435	0.72	+0.5
4,395,872	+		PFLU_RS19435	0.72	+1.0
4,395,872	+		PFLU_RS19435	0.72	-0.4
4,395,873	-		PFLU_RS19435	0.72	+0.7
4,395,873	-		PFLU_RS19435	0.72	-0.7
4,395,873	-		PFLU_RS19435	0.72	-0.1
4,395,873	-		PFLU_RS19435	0.72	+1.1
4,395,873	-		PFLU_RS19435	0.72	-0.9
4,395,873	-		PFLU_RS19435	0.72	+0.3
4,395,921	+		PFLU_RS19435	0.75	+0.4
4,395,922	-		PFLU_RS19435	0.75	+0.7
4,395,974	+		PFLU_RS19435	0.79	-0.6
4,395,974	+		PFLU_RS19435	0.79	+0.4
4,395,974	+		PFLU_RS19435	0.79	-0.0
4,395,975	-		PFLU_RS19435	0.79	+0.7
4,396,166	+				+0.1
4,396,228	-				-0.0
4,396,229	+				+0.3
4,396,229	+				-0.4
4,396,229	+				-1.6
4,396,229	+				+0.3
4,396,229	+				-0.8
4,396,229	+				-0.7
4,396,230	-				+0.4
4,396,230	-				-0.3
4,396,230	-				-0.6
4,396,230	-				-1.7
4,396,288	+				-0.6
4,396,288	+				-0.2
4,396,310	+				-1.7
4,396,310	+				-0.7
4,396,310	+				+1.0
4,396,311	-				-0.8
4,396,311	-				+0.3
4,396,311	-				-0.2
4,396,336	+				+2.0
4,396,550	+		PFLU_RS19440	0.23	+0.3
4,396,595	-		PFLU_RS19440	0.29	+1.1
4,396,723	+		PFLU_RS19440	0.46	-0.3
4,396,723	+		PFLU_RS19440	0.46	+0.5
4,396,723	+		PFLU_RS19440	0.46	-0.6
4,396,723	+		PFLU_RS19440	0.46	+0.4
4,396,724	-		PFLU_RS19440	0.47	-0.0
4,396,724	-		PFLU_RS19440	0.47	+1.2
4,396,724	-		PFLU_RS19440	0.47	+0.6
4,396,834	+		PFLU_RS19440	0.61	-0.6
4,396,834	+		PFLU_RS19440	0.61	+0.2
4,396,834	+		PFLU_RS19440	0.61	+0.4
4,396,835	-		PFLU_RS19440	0.61	+1.3
4,396,835	-		PFLU_RS19440	0.61	+0.3
4,396,870	+		PFLU_RS19440	0.66	+1.5
4,396,870	+		PFLU_RS19440	0.66	-2.2
4,396,871	-		PFLU_RS19440	0.66	+0.8
4,396,910	-		PFLU_RS19440	0.71	-0.0
4,396,942	-		PFLU_RS19440	0.76	+0.6
4,396,942	-		PFLU_RS19440	0.76	+1.4
4,397,037	+		PFLU_RS19440	0.88	+0.1
4,397,037	+		PFLU_RS19440	0.88	-0.1
4,397,037	+		PFLU_RS19440	0.88	+0.4
4,397,037	+		PFLU_RS19440	0.88	+0.3
4,397,037	+		PFLU_RS19440	0.88	+0.8
4,397,037	+		PFLU_RS19440	0.88	-0.0
4,397,038	-		PFLU_RS19440	0.88	+1.2
4,397,038	-		PFLU_RS19440	0.88	-0.3
4,397,038	-		PFLU_RS19440	0.88	+1.1
4,397,068	+				-1.4
4,397,123	-				-0.6
4,397,192	+				+1.1
4,397,193	-				-0.6
4,397,193	-				-0.3
4,397,193	-				-0.7
4,397,193	-				-0.2
4,397,193	-				+1.3
4,397,199	+				+0.7
4,397,203	+				-2.0
4,397,213	-				+0.6
4,397,237	-				-0.9
4,397,237	-				+0.7
4,397,416	+		PFLU_RS19445	0.24	-0.0
4,397,417	-		PFLU_RS19445	0.24	+1.0
4,397,460	+		PFLU_RS19445	0.30	-0.0
4,397,460	+		PFLU_RS19445	0.30	+2.0
4,397,461	-		PFLU_RS19445	0.30	-0.4
4,397,508	+		PFLU_RS19445	0.36	+1.3
4,397,508	+		PFLU_RS19445	0.36	+0.4
4,397,509	-		PFLU_RS19445	0.36	-2.6
4,397,509	-		PFLU_RS19445	0.36	+1.0
4,397,544	+		PFLU_RS19445	0.41	+0.3
4,397,544	+		PFLU_RS19445	0.41	+0.7
4,397,544	+		PFLU_RS19445	0.41	-0.8
4,397,545	-		PFLU_RS19445	0.41	+0.7
4,397,545	-		PFLU_RS19445	0.41	+0.4
4,397,545	-		PFLU_RS19445	0.41	+1.4
4,397,613	+		PFLU_RS19445	0.50	-0.4
4,397,708	+		PFLU_RS19445	0.62	-0.3
4,397,806	-		PFLU_RS19445	0.75	+0.4
4,397,806	-		PFLU_RS19445	0.75	-0.4
4,397,998	-				+0.1
4,398,052	+				-0.6
4,398,052	+				+0.5
4,398,052	+				+0.4
4,398,052	+				+0.3
4,398,052	+				+0.1
4,398,052	+				+0.6
4,398,052	+				-0.4
4,398,053	-				+0.7
4,398,053	-				-0.1
4,398,062	+				+2.6
4,398,063	-				+0.7
4,398,063	-				-1.2
4,398,063	-				+0.3
4,398,063	-				-0.3
4,398,063	-				+1.8