Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19050

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
4,306,528	+		PFLU_RS19040	0.31	-0.5
4,306,528	+		PFLU_RS19040	0.31	-1.4
4,306,528	+		PFLU_RS19040	0.31	+0.4
4,306,528	+		PFLU_RS19040	0.31	-0.7
4,306,528	+		PFLU_RS19040	0.31	+0.2
4,306,529	-		PFLU_RS19040	0.31	+0.1
4,306,529	-		PFLU_RS19040	0.31	-1.4
4,306,537	+		PFLU_RS19040	0.32	-0.1
4,306,538	-		PFLU_RS19040	0.32	+0.4
4,306,538	-		PFLU_RS19040	0.32	+0.2
4,306,739	+		PFLU_RS19040	0.69	-0.1
4,306,797	+		PFLU_RS19040	0.80	+1.0
4,306,797	+		PFLU_RS19040	0.80	-0.6
4,306,798	-		PFLU_RS19040	0.80	-0.0
4,306,798	-		PFLU_RS19040	0.80	+0.1
4,306,798	-		PFLU_RS19040	0.80	+2.0
4,306,798	-		PFLU_RS19040	0.80	-1.5
4,306,896	+				+1.1
4,306,896	+				+2.8
4,306,896	+				-0.0
4,306,896	+				-0.0
4,306,896	+				-0.7
4,306,896	+				+1.0
4,306,896	+				-1.0
4,306,896	+				+0.7
4,306,896	+				-1.0
4,306,896	+				-0.0
4,306,896	+				+0.6
4,306,896	+				+0.1
4,306,896	+				-0.5
4,306,896	+				-0.7
4,306,896	+				+0.6
4,306,896	+				-1.7
4,306,896	+				-0.0
4,306,897	-				-0.2
4,306,897	-				-0.7
4,306,897	-				-1.3
4,306,897	-				+0.0
4,306,897	-				-0.2
4,306,897	-				-0.6
4,306,897	-				+0.6
4,306,897	-				-0.0
4,306,897	-				-1.2
4,306,897	-				-0.9
4,306,897	-				-0.8
4,306,897	-				+1.3
4,306,897	-				+0.4
4,306,897	-				+0.4
4,306,897	-				+1.7
4,306,924	+				+0.9
4,306,924	+				-0.1
4,306,925	-				-0.6
4,306,957	+				-1.0
4,306,957	+				+1.2
4,306,957	+				+1.3
4,306,957	+				-1.1
4,306,957	+				+0.6
4,306,957	+				+1.1
4,306,958	-				-1.0
4,306,958	-				+0.1
4,306,958	-				-0.4
4,306,982	+		PFLU_RS19045	0.11	+0.7
4,306,983	-		PFLU_RS19045	0.11	+0.2
4,306,983	-		PFLU_RS19045	0.11	+0.1
4,307,016	+		PFLU_RS19045	0.17	-0.1
4,307,065	+		PFLU_RS19045	0.26	-0.9
4,307,065	+		PFLU_RS19045	0.26	+0.3
4,307,065	+		PFLU_RS19045	0.26	+1.0
4,307,065	+		PFLU_RS19045	0.26	-0.6
4,307,066	-		PFLU_RS19045	0.26	+1.3
4,307,066	-		PFLU_RS19045	0.26	-1.4
4,307,066	-		PFLU_RS19045	0.26	+0.5
4,307,066	-		PFLU_RS19045	0.26	-0.0
4,307,066	-		PFLU_RS19045	0.26	-1.1
4,307,066	-		PFLU_RS19045	0.26	-2.5
4,307,066	-		PFLU_RS19045	0.26	-0.3
4,307,066	-		PFLU_RS19045	0.26	-1.4
4,307,066	-		PFLU_RS19045	0.26	-0.0
4,307,066	-		PFLU_RS19045	0.26	-2.0
4,307,460	+				-0.8
4,307,460	+				+0.0
4,307,460	+				-1.8
4,307,460	+				+0.5
4,307,460	+				+0.4
4,307,460	+				-0.6
4,307,461	-				+2.0
4,307,461	-				+2.1
4,307,461	-				-1.4
4,307,461	-				+0.2
4,307,461	-				+0.2
4,307,461	-				-0.0
4,307,494	-				-0.4
4,307,494	-				-0.4
4,307,628	+		PFLU_RS19050	0.32	-0.2
4,307,628	+		PFLU_RS19050	0.32	+1.0
4,307,628	+		PFLU_RS19050	0.32	+2.6
4,307,628	+		PFLU_RS19050	0.32	+0.3
4,307,629	-		PFLU_RS19050	0.32	-0.6
4,307,629	-		PFLU_RS19050	0.32	+0.1
4,307,673	+		PFLU_RS19050	0.41	+1.6
4,307,673	+		PFLU_RS19050	0.41	+0.8
4,307,674	-		PFLU_RS19050	0.41	-0.9
4,307,674	-		PFLU_RS19050	0.41	+0.2
4,307,928	+		PFLU_RS19050	0.89	-0.6
4,307,966	+				+1.5
4,307,966	+				-0.3
4,307,966	+				-0.6
4,307,967	-				-1.6
4,307,967	-				+0.2
4,307,967	-				+2.0
4,307,967	-				+1.6
4,307,999	+				+0.6
4,307,999	+				-0.6
4,307,999	+				+0.7
4,307,999	+				+0.3
4,308,000	-				-2.0
4,308,009	-				+1.7
4,308,009	-				+1.4
4,308,009	-				-0.6
4,308,018	+				-0.0
4,308,018	+				-0.8
4,308,018	+				-0.9
4,308,019	-				-1.0
4,308,026	+				-0.4
4,308,027	-				-1.5
4,308,027	-				-1.1
4,308,027	-				-0.0
4,308,063	+				-1.4
4,308,063	+				-2.0
4,308,063	+				+0.6
4,308,063	+				+1.2
4,308,063	+				+3.0
4,308,063	+				+0.8
4,308,063	+				+0.3
4,308,063	+				-0.2
4,308,064	-				+0.2
4,308,064	-				-0.4
4,308,064	-				-0.0
4,308,064	-				-1.0
4,308,064	-				+2.3
4,308,064	-				+2.0
4,308,064	-				+0.9
4,308,109	+				-0.0
4,308,109	+				-1.4
4,308,110	-				-0.1
4,308,136	-				+1.4
4,308,156	+				+1.4
4,308,156	+				+0.5
4,308,156	+				+0.5
4,308,156	+				-0.3
4,308,156	+				+0.2
4,308,156	+				+0.3
4,308,156	+				-1.6
4,308,156	+				+1.8
4,308,157	-				+1.0
4,308,157	-				+0.1
4,308,157	-				+0.6
4,308,157	-				+2.1
4,308,157	-				+0.3
4,308,158	+				-0.9
4,308,158	+				-0.5
4,308,158	+				-0.4
4,308,158	+				+0.4
4,308,159	-				+0.1
4,308,159	-				-0.4
4,308,159	-				-1.0
4,308,159	-				-0.1
4,308,159	-				+1.1
4,308,159	-				-0.6
4,308,159	-				-0.8
4,308,159	-				+0.5
4,308,159	-				-0.2
4,308,208	-				-0.4
4,308,277	+				+0.4
4,308,278	-				+0.3
4,308,278	-				-0.0
4,308,278	-				+1.0
4,308,278	-				+1.0
4,308,367	+		PFLU_RS19055	0.18	-0.7
4,308,368	-		PFLU_RS19055	0.18	-1.5
4,308,368	-		PFLU_RS19055	0.18	-0.1
4,308,670	+		PFLU_RS19055	0.45	-0.2
4,308,670	+		PFLU_RS19055	0.45	-1.0
4,308,670	+		PFLU_RS19055	0.45	-1.5
4,308,670	+		PFLU_RS19055	0.45	+0.8
4,308,670	+		PFLU_RS19055	0.45	+0.4
4,308,670	+		PFLU_RS19055	0.45	+0.5
4,308,670	+		PFLU_RS19055	0.45	-0.0
4,308,670	+		PFLU_RS19055	0.45	-0.2
4,308,670	+		PFLU_RS19055	0.45	-0.8
4,308,670	+		PFLU_RS19055	0.45	+0.1
4,308,671	-		PFLU_RS19055	0.46	-0.7
4,308,671	-		PFLU_RS19055	0.46	+1.5
4,308,671	-		PFLU_RS19055	0.46	-1.2
4,308,671	-		PFLU_RS19055	0.46	+0.2
4,308,671	-		PFLU_RS19055	0.46	-0.0
4,308,671	-		PFLU_RS19055	0.46	+1.0
4,308,671	-		PFLU_RS19055	0.46	+1.2
4,308,671	-		PFLU_RS19055	0.46	-1.7
4,308,671	-		PFLU_RS19055	0.46	+0.5
4,308,703	+		PFLU_RS19055	0.48	+0.7
4,308,704	-		PFLU_RS19055	0.49	-0.7
4,308,704	-		PFLU_RS19055	0.49	+0.2
4,308,832	+		PFLU_RS19055	0.60	-0.2
4,308,832	+		PFLU_RS19055	0.60	-1.6
4,308,832	+		PFLU_RS19055	0.60	-0.4
4,308,832	+		PFLU_RS19055	0.60	+0.6
4,308,832	+		PFLU_RS19055	0.60	+1.4
4,308,832	+		PFLU_RS19055	0.60	-0.3
4,308,833	-		PFLU_RS19055	0.60	+0.2
4,308,833	-		PFLU_RS19055	0.60	-0.9
4,308,833	-		PFLU_RS19055	0.60	-0.2
4,308,833	-		PFLU_RS19055	0.60	+0.2
4,308,836	+		PFLU_RS19055	0.61	-0.2
4,308,836	+		PFLU_RS19055	0.61	-0.9
4,308,836	+		PFLU_RS19055	0.61	+0.3
4,308,836	+		PFLU_RS19055	0.61	+1.0
4,308,836	+		PFLU_RS19055	0.61	-1.5
4,308,836	+		PFLU_RS19055	0.61	-0.1
4,308,836	+		PFLU_RS19055	0.61	-0.4
4,308,836	+		PFLU_RS19055	0.61	+0.2
4,308,837	-		PFLU_RS19055	0.61	+0.7
4,308,837	-		PFLU_RS19055	0.61	-1.8
4,308,837	-		PFLU_RS19055	0.61	+0.6
4,308,837	-		PFLU_RS19055	0.61	-0.1
4,308,837	-		PFLU_RS19055	0.61	+1.1
4,308,837	-		PFLU_RS19055	0.61	+0.1
4,308,837	-		PFLU_RS19055	0.61	+1.4
4,308,837	-		PFLU_RS19055	0.61	-0.1
4,308,837	-		PFLU_RS19055	0.61	-0.4