Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17570

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,995,624	+		PFLU_RS17565	0.70	-0.2
3,995,625	-		PFLU_RS17565	0.70	+0.5
3,995,625	-		PFLU_RS17565	0.70	-0.2
3,995,625	-		PFLU_RS17565	0.70	-1.7
3,995,787	-		PFLU_RS17565	0.75	-0.0
3,995,864	+		PFLU_RS17565	0.78	-0.4
3,996,236	+		PFLU_RS17565	0.90	+0.2
3,996,449	+				+0.2
3,996,449	+				-0.3
3,996,450	-				-0.8
3,996,450	-				-0.2
3,996,450	-				-0.1
3,996,450	-				-0.5
3,996,539	+				-0.1
3,996,539	+				+0.5
3,996,540	-				-1.1
3,996,595	+				+0.6
3,996,634	+				-1.9
3,996,635	-				-0.9
3,996,635	-				-0.2
3,996,635	-				+0.1
3,996,635	-				+0.9
3,996,635	-				+1.9
3,996,637	+				-1.1
3,996,637	+				+0.4
3,996,637	+				-0.2
3,996,638	-				+0.6
3,996,702	-		PFLU_RS17570	0.11	+0.1
3,996,702	-		PFLU_RS17570	0.11	-1.3
3,997,189	-		PFLU_RS17570	0.46	-0.4
3,997,267	+		PFLU_RS17570	0.51	+0.7
3,997,267	+		PFLU_RS17570	0.51	+0.5
3,997,268	-		PFLU_RS17570	0.51	+0.1
3,997,660	+		PFLU_RS17570	0.79	+2.1
3,997,661	-		PFLU_RS17570	0.79	+0.6
3,997,661	-		PFLU_RS17570	0.79	-0.1
3,997,663	+		PFLU_RS17570	0.79	+0.1
3,997,663	+		PFLU_RS17570	0.79	-0.3
3,997,663	+		PFLU_RS17570	0.79	+1.3
3,997,664	-		PFLU_RS17570	0.79	-2.6
3,997,664	-		PFLU_RS17570	0.79	+0.7
3,997,664	-		PFLU_RS17570	0.79	+1.2
3,997,664	-		PFLU_RS17570	0.79	+0.2
3,997,690	+		PFLU_RS17570	0.81	-0.1
3,997,742	-		PFLU_RS17570	0.85	+1.6
3,997,940	+				+0.9
3,997,940	+				-0.3
3,997,940	+				-2.0
3,997,941	-				+0.2
3,997,941	-				-2.7
3,997,941	-				-1.6
3,997,941	-				+0.0
3,997,941	-				-0.7
3,997,941	-				-0.7
3,997,941	-				-0.6
3,998,319	-		PFLU_RS17575	0.58	+0.3
3,998,492	+		PFLU_RS17575	0.86	+0.2
3,998,492	+		PFLU_RS17575	0.86	+0.5
3,998,842	+		PFLU_RS17580	0.43	-0.4
3,998,842	+		PFLU_RS17580	0.43	-0.4
3,998,843	-		PFLU_RS17580	0.43	-0.1
3,998,864	+		PFLU_RS17580	0.46	-1.9
3,998,864	+		PFLU_RS17580	0.46	-0.1
3,998,865	-		PFLU_RS17580	0.47	+0.1