Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17425

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,961,541	+				+0.9
3,961,542	-				-0.1
3,961,542	-				-0.4
3,961,542	-				+0.9
3,961,542	-				-0.9
3,961,639	+				+0.3
3,961,680	-				-0.2
3,961,680	-				-0.4
3,961,680	-				+0.5
3,961,695	+				+0.3
3,961,696	-				+1.4
3,961,717	-				+0.2
3,961,727	+				-0.4
3,961,779	+		PFLU_RS17420	0.13	+0.7
3,961,779	+		PFLU_RS17420	0.13	-0.5
3,962,205	+		PFLU_RS17420	0.64	+0.8
3,962,205	+		PFLU_RS17420	0.64	-2.7
3,962,206	-		PFLU_RS17420	0.64	-0.3
3,962,268	+		PFLU_RS17420	0.72	-2.3
3,962,313	+		PFLU_RS17420	0.77	+0.0
3,962,313	+		PFLU_RS17420	0.77	+1.0
3,962,314	-		PFLU_RS17420	0.77	+0.0
3,962,314	-		PFLU_RS17420	0.77	-0.1
3,962,314	-		PFLU_RS17420	0.77	+0.0
3,962,314	-		PFLU_RS17420	0.77	+0.7
3,962,436	+				-0.5
3,962,437	-				-0.2
3,962,437	-				+0.9
3,962,437	-				+0.5
3,962,506	+				-0.4
3,962,506	+				-0.8
3,962,507	-				+0.7
3,962,507	-				-1.3
3,962,507	-				+0.2
3,962,507	-				+0.1
3,962,578	-				-2.1
3,962,730	+		PFLU_RS17425	0.21	+1.0
3,962,730	+		PFLU_RS17425	0.21	+0.3
3,962,730	+		PFLU_RS17425	0.21	+0.2
3,962,731	-		PFLU_RS17425	0.21	-1.7
3,962,871	+		PFLU_RS17425	0.35	-0.7
3,962,872	-		PFLU_RS17425	0.35	+1.3
3,962,872	-		PFLU_RS17425	0.35	-0.6
3,962,872	-		PFLU_RS17425	0.35	+0.2
3,963,285	+		PFLU_RS17425	0.75	-0.1
3,963,286	-		PFLU_RS17425	0.75	+0.5
3,963,286	-		PFLU_RS17425	0.75	+1.1
3,963,296	+		PFLU_RS17425	0.76	+0.9
3,963,297	-		PFLU_RS17425	0.76	-0.2
3,963,297	-		PFLU_RS17425	0.76	+0.8
3,963,529	+				-1.4
3,963,530	-				-0.6
3,963,621	+		PFLU_RS17430	0.10	-0.7
3,963,622	-		PFLU_RS17430	0.10	+0.5
3,963,622	-		PFLU_RS17430	0.10	-1.4
3,963,630	-		PFLU_RS17430	0.11	+0.0
3,963,630	-		PFLU_RS17430	0.11	+0.9
3,963,662	+		PFLU_RS17430	0.15	-0.9
3,963,662	+		PFLU_RS17430	0.15	+1.0
3,963,662	+		PFLU_RS17430	0.15	-0.1
3,963,662	+		PFLU_RS17430	0.15	+0.3
3,963,662	+		PFLU_RS17430	0.15	-0.4
3,963,663	-		PFLU_RS17430	0.15	+1.4
3,963,663	-		PFLU_RS17430	0.15	-0.5
3,963,663	-		PFLU_RS17430	0.15	-0.4
3,963,663	-		PFLU_RS17430	0.15	-0.7
3,963,705	+		PFLU_RS17430	0.21	+1.3
3,963,899	-		PFLU_RS17430	0.45	+0.7
3,963,977	+		PFLU_RS17430	0.55	+0.5
3,963,977	+		PFLU_RS17430	0.55	-1.4
3,963,977	+		PFLU_RS17430	0.55	+2.1
3,963,977	+		PFLU_RS17430	0.55	-0.1
3,963,978	-		PFLU_RS17430	0.55	+0.1
3,963,978	-		PFLU_RS17430	0.55	-1.2
3,963,978	-		PFLU_RS17430	0.55	+0.5
3,963,978	-		PFLU_RS17430	0.55	-1.2
3,963,978	-		PFLU_RS17430	0.55	-0.4
3,963,978	-		PFLU_RS17430	0.55	+0.5
3,964,071	+		PFLU_RS17430	0.67	-1.6
3,964,071	+		PFLU_RS17430	0.67	+0.3
3,964,071	+		PFLU_RS17430	0.67	+0.1
3,964,071	+		PFLU_RS17430	0.67	+3.1
3,964,071	+		PFLU_RS17430	0.67	-0.7
3,964,072	-		PFLU_RS17430	0.67	+1.6
3,964,072	-		PFLU_RS17430	0.67	-0.6
3,964,072	-		PFLU_RS17430	0.67	-2.6
3,964,072	-		PFLU_RS17430	0.67	+0.7
3,964,072	-		PFLU_RS17430	0.67	-0.1
3,964,075	+		PFLU_RS17430	0.67	+0.3
3,964,076	-		PFLU_RS17430	0.67	-2.4
3,964,076	-		PFLU_RS17430	0.67	-0.3
3,964,096	+		PFLU_RS17430	0.70	+0.0
3,964,296	+				+1.2
3,964,297	-				+0.6
3,964,442	-		PFLU_RS17435	0.13	-1.7
3,964,449	-		PFLU_RS17435	0.14	-0.7
3,964,459	+		PFLU_RS17435	0.16	-0.4
3,964,459	+		PFLU_RS17435	0.16	+0.4
3,964,460	-		PFLU_RS17435	0.16	+0.0
3,964,460	-		PFLU_RS17435	0.16	-0.3
3,964,460	-		PFLU_RS17435	0.16	+0.3
3,964,499	+		PFLU_RS17435	0.20	-0.4