Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16420

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,723,018	+		PFLU_RS16415	0.45	+0.8
3,723,179	-		PFLU_RS16415	0.54	-0.9
3,723,218	+		PFLU_RS16415	0.56	-3.2
3,723,218	+		PFLU_RS16415	0.56	+2.8
3,723,218	+		PFLU_RS16415	0.56	-0.9
3,723,218	+		PFLU_RS16415	0.56	-2.0
3,723,218	+		PFLU_RS16415	0.56	+0.0
3,723,218	+		PFLU_RS16415	0.56	+0.5
3,723,218	+		PFLU_RS16415	0.56	+0.3
3,723,219	-		PFLU_RS16415	0.56	-0.6
3,723,219	-		PFLU_RS16415	0.56	-0.1
3,723,219	-		PFLU_RS16415	0.56	-0.2
3,723,219	-		PFLU_RS16415	0.56	-0.2
3,723,219	-		PFLU_RS16415	0.56	+1.0
3,723,219	-		PFLU_RS16415	0.56	-0.6
3,723,219	-		PFLU_RS16415	0.56	+0.7
3,723,219	-		PFLU_RS16415	0.56	-1.2
3,723,219	-		PFLU_RS16415	0.56	-0.7
3,723,221	+		PFLU_RS16415	0.56	+1.0
3,723,221	+		PFLU_RS16415	0.56	-3.4
3,723,221	+		PFLU_RS16415	0.56	-1.0
3,723,222	-		PFLU_RS16415	0.56	+0.2
3,723,222	-		PFLU_RS16415	0.56	+0.0
3,723,222	-		PFLU_RS16415	0.56	+0.8
3,723,222	-		PFLU_RS16415	0.56	+0.2
3,723,280	+		PFLU_RS16415	0.60	-0.7
3,723,281	-		PFLU_RS16415	0.60	-1.2
3,723,284	+		PFLU_RS16415	0.60	+0.3
3,723,284	+		PFLU_RS16415	0.60	+0.1
3,723,284	+		PFLU_RS16415	0.60	-0.2
3,723,284	+		PFLU_RS16415	0.60	+0.2
3,723,285	-		PFLU_RS16415	0.60	-0.1
3,723,285	-		PFLU_RS16415	0.60	+1.2
3,723,285	-		PFLU_RS16415	0.60	-0.4
3,723,285	-		PFLU_RS16415	0.60	-0.3
3,723,285	-		PFLU_RS16415	0.60	-0.2
3,723,295	+		PFLU_RS16415	0.61	-1.2
3,723,295	+		PFLU_RS16415	0.61	+0.2
3,723,295	+		PFLU_RS16415	0.61	-1.0
3,723,295	+		PFLU_RS16415	0.61	+1.2
3,723,295	+		PFLU_RS16415	0.61	-0.4
3,723,296	-		PFLU_RS16415	0.61	-1.2
3,723,296	-		PFLU_RS16415	0.61	+0.7
3,723,296	-		PFLU_RS16415	0.61	-1.3
3,723,296	-		PFLU_RS16415	0.61	+1.0
3,723,296	-		PFLU_RS16415	0.61	+0.5
3,723,296	-		PFLU_RS16415	0.61	-1.2
3,723,296	-		PFLU_RS16415	0.61	+1.0
3,723,296	-		PFLU_RS16415	0.61	-0.7
3,723,296	-		PFLU_RS16415	0.61	+0.3
3,723,296	-		PFLU_RS16415	0.61	+0.6
3,723,708	-		PFLU_RS16415	0.84	+0.5
3,723,938	+				-0.5
3,723,939	-				+1.0
3,724,064	+				+0.8
3,724,064	+				-1.0
3,724,161	-				+3.0
3,724,161	-				+0.0
3,724,187	+				-0.2
3,724,228	+		PFLU_RS16420	0.12	-0.0
3,724,229	-		PFLU_RS16420	0.12	-0.8
3,724,347	+		PFLU_RS16420	0.18	+0.3
3,724,393	+		PFLU_RS16420	0.20	-0.6
3,724,394	-		PFLU_RS16420	0.20	-1.1
3,724,394	-		PFLU_RS16420	0.20	-2.9
3,724,394	-		PFLU_RS16420	0.20	-0.2
3,724,394	-		PFLU_RS16420	0.20	+0.5
3,724,456	+		PFLU_RS16420	0.23	+0.3
3,724,456	+		PFLU_RS16420	0.23	+0.8
3,724,456	+		PFLU_RS16420	0.23	+1.4
3,724,457	-		PFLU_RS16420	0.23	-1.0
3,724,607	-		PFLU_RS16420	0.30	-0.7
3,724,642	+		PFLU_RS16420	0.32	-0.2
3,724,642	+		PFLU_RS16420	0.32	-0.5
3,724,642	+		PFLU_RS16420	0.32	+1.4
3,724,643	-		PFLU_RS16420	0.32	+0.6
3,724,643	-		PFLU_RS16420	0.32	+0.7
3,724,643	-		PFLU_RS16420	0.32	+0.3
3,724,643	-		PFLU_RS16420	0.32	+0.3
3,724,795	+		PFLU_RS16420	0.39	+0.4
3,724,796	-		PFLU_RS16420	0.39	-1.7
3,724,796	-		PFLU_RS16420	0.39	-0.3
3,724,796	-		PFLU_RS16420	0.39	+0.0
3,724,796	-		PFLU_RS16420	0.39	+0.8
3,724,796	-		PFLU_RS16420	0.39	-0.6
3,724,796	-		PFLU_RS16420	0.39	-1.4
3,724,796	-		PFLU_RS16420	0.39	+0.3
3,724,796	-		PFLU_RS16420	0.39	-0.6
3,724,797	+		PFLU_RS16420	0.39	-2.3
3,724,797	+		PFLU_RS16420	0.39	+0.3
3,724,798	-		PFLU_RS16420	0.39	+0.4
3,725,021	-		PFLU_RS16420	0.50	+0.5
3,725,401	+		PFLU_RS16420	0.68	-0.2
3,725,401	+		PFLU_RS16420	0.68	+0.0
3,725,402	-		PFLU_RS16420	0.68	+1.1
3,725,402	-		PFLU_RS16420	0.68	+0.1
3,725,407	+		PFLU_RS16420	0.68	-1.9
3,725,407	+		PFLU_RS16420	0.68	-1.0
3,725,407	+		PFLU_RS16420	0.68	-0.9
3,725,407	+		PFLU_RS16420	0.68	+0.8
3,725,408	-		PFLU_RS16420	0.69	-0.7
3,725,408	-		PFLU_RS16420	0.69	+0.8
3,725,408	-		PFLU_RS16420	0.69	-0.2
3,725,408	-		PFLU_RS16420	0.69	-0.2
3,725,408	-		PFLU_RS16420	0.69	-1.4
3,725,408	-		PFLU_RS16420	0.69	-0.9
3,725,408	-		PFLU_RS16420	0.69	-0.9
3,725,823	+		PFLU_RS16420	0.88	-0.4
3,725,823	+		PFLU_RS16420	0.88	+0.7
3,725,823	+		PFLU_RS16420	0.88	+0.8
3,725,823	+		PFLU_RS16420	0.88	-0.9
3,725,823	+		PFLU_RS16420	0.88	+1.3
3,725,823	+		PFLU_RS16420	0.88	-0.0
3,725,823	+		PFLU_RS16420	0.88	-0.7
3,725,823	+		PFLU_RS16420	0.88	+0.8
3,725,823	+		PFLU_RS16420	0.88	+0.2
3,725,824	-		PFLU_RS16420	0.88	-0.3
3,725,824	-		PFLU_RS16420	0.88	+0.8
3,725,824	-		PFLU_RS16420	0.88	-0.3
3,725,824	-		PFLU_RS16420	0.88	+0.7
3,725,845	+		PFLU_RS16420	0.89	-0.2
3,725,845	+		PFLU_RS16420	0.89	-0.2
3,726,046	+				-0.3
3,726,046	+				-0.3
3,726,046	+				+0.4
3,726,047	-				-1.3
3,726,047	-				-0.3
3,726,047	-				+1.8
3,726,144	+				-1.0
3,726,145	-				+0.6
3,726,174	+				-0.5
3,726,175	-				-1.5
3,726,219	+				+0.4
3,726,219	+				+0.2
3,726,220	-				-0.0
3,726,220	-				+0.2
3,726,408	+		PFLU_RS16425	0.13	+0.3
3,726,409	-		PFLU_RS16425	0.13	-0.6
3,726,555	+		PFLU_RS16425	0.18	-0.0
3,726,555	+		PFLU_RS16425	0.18	+0.8
3,726,555	+		PFLU_RS16425	0.18	-0.2
3,726,555	+		PFLU_RS16425	0.18	-0.9
3,726,556	-		PFLU_RS16425	0.18	+0.3
3,726,556	-		PFLU_RS16425	0.18	+0.2
3,726,556	-		PFLU_RS16425	0.18	-0.2
3,726,556	-		PFLU_RS16425	0.18	-0.5
3,726,556	-		PFLU_RS16425	0.18	+0.4
3,726,567	+		PFLU_RS16425	0.18	+0.3
3,726,567	+		PFLU_RS16425	0.18	-0.2
3,726,567	+		PFLU_RS16425	0.18	+0.5
3,726,600	+		PFLU_RS16425	0.20	-1.2
3,726,601	-		PFLU_RS16425	0.20	+1.7
3,726,601	-		PFLU_RS16425	0.20	+1.4
3,726,681	+		PFLU_RS16425	0.23	-1.4
3,726,681	+		PFLU_RS16425	0.23	+2.4
3,726,681	+		PFLU_RS16425	0.23	-0.7
3,726,682	-		PFLU_RS16425	0.23	-1.2
3,726,682	-		PFLU_RS16425	0.23	-0.7
3,726,682	-		PFLU_RS16425	0.23	+0.8
3,726,998	+		PFLU_RS16425	0.34	-1.5
3,726,999	-		PFLU_RS16425	0.34	+0.2
3,726,999	-		PFLU_RS16425	0.34	+0.2
3,726,999	-		PFLU_RS16425	0.34	+0.5
3,726,999	-		PFLU_RS16425	0.34	+1.5