Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16390

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,716,521	+				+0.8
3,716,522	-				-0.2
3,716,522	-				+0.1
3,716,553	+				-0.5
3,716,553	+				+0.4
3,716,553	+				+0.1
3,716,554	-				-1.3
3,716,588	+				-0.9
3,716,589	-				+2.4
3,716,589	-				-0.5
3,716,589	-				-0.2
3,716,630	+				-1.0
3,716,630	+				+0.8
3,716,630	+				-0.4
3,716,630	+				+0.6
3,716,630	+				-0.3
3,716,631	-				+0.1
3,716,631	-				-0.9
3,716,652	+				-1.3
3,716,652	+				+0.2
3,716,652	+				+0.0
3,716,652	+				+0.1
3,716,652	+				-0.7
3,716,652	+				-0.9
3,716,652	+				-0.1
3,716,652	+				-0.0
3,716,652	+				-0.1
3,716,652	+				-0.7
3,716,652	+				-0.7
3,716,653	-				+1.0
3,716,653	-				+1.5
3,716,653	-				-1.4
3,716,653	-				+1.8
3,716,653	-				-0.6
3,716,653	-				-0.5
3,716,653	-				+0.1
3,716,653	-				+0.8
3,716,653	-				-0.6
3,716,653	-				-0.7
3,716,653	-				-1.1
3,716,653	-				-0.0
3,716,655	+				+0.6
3,716,655	+				+0.8
3,716,655	+				+1.1
3,716,656	-				-2.0
3,716,656	-				+0.4
3,716,656	-				-0.7
3,716,656	-				+0.3
3,716,757	-		PFLU_RS16385	0.17	+0.7
3,716,757	-		PFLU_RS16385	0.17	-1.2
3,716,757	-		PFLU_RS16385	0.17	-1.3
3,716,757	-		PFLU_RS16385	0.17	-0.2
3,716,757	-		PFLU_RS16385	0.17	-0.9
3,716,757	-		PFLU_RS16385	0.17	-0.3
3,716,762	+		PFLU_RS16385	0.18	+0.4
3,716,762	+		PFLU_RS16385	0.18	-0.4
3,716,762	+		PFLU_RS16385	0.18	+1.8
3,716,762	+		PFLU_RS16385	0.18	-0.7
3,716,762	+		PFLU_RS16385	0.18	+0.1
3,716,763	-		PFLU_RS16385	0.19	-0.2
3,716,763	-		PFLU_RS16385	0.19	-1.5
3,716,763	-		PFLU_RS16385	0.19	+0.1
3,716,763	-		PFLU_RS16385	0.19	+0.4
3,716,763	-		PFLU_RS16385	0.19	-0.0
3,716,763	-		PFLU_RS16385	0.19	+0.6
3,716,900	+		PFLU_RS16385	0.48	-1.5
3,716,901	-		PFLU_RS16385	0.49	+0.0
3,716,978	+		PFLU_RS16385	0.65	-0.7
3,716,978	+		PFLU_RS16385	0.65	-1.7
3,716,978	+		PFLU_RS16385	0.65	-0.6
3,716,978	+		PFLU_RS16385	0.65	-0.2
3,716,979	-		PFLU_RS16385	0.66	-0.6
3,716,979	-		PFLU_RS16385	0.66	+1.0
3,716,979	-		PFLU_RS16385	0.66	-1.0
3,717,021	+		PFLU_RS16385	0.75	+0.1
3,717,021	+		PFLU_RS16385	0.75	-0.2
3,717,021	+		PFLU_RS16385	0.75	+0.2
3,717,021	+		PFLU_RS16385	0.75	-1.7
3,717,022	-		PFLU_RS16385	0.75	-0.3
3,717,022	-		PFLU_RS16385	0.75	+0.3
3,717,022	-		PFLU_RS16385	0.75	+1.3
3,717,029	+		PFLU_RS16385	0.76	+0.6
3,717,029	+		PFLU_RS16385	0.76	+0.1
3,717,029	+		PFLU_RS16385	0.76	+0.4
3,717,029	+		PFLU_RS16385	0.76	+0.3
3,717,029	+		PFLU_RS16385	0.76	+0.8
3,717,029	+		PFLU_RS16385	0.76	-0.3
3,717,030	-		PFLU_RS16385	0.77	+0.3
3,717,030	-		PFLU_RS16385	0.77	+0.5
3,717,030	-		PFLU_RS16385	0.77	+0.6
3,717,030	-		PFLU_RS16385	0.77	-0.6
3,717,030	-		PFLU_RS16385	0.77	-0.2
3,717,030	-		PFLU_RS16385	0.77	-0.2
3,717,134	+				-0.0
3,717,628	+		PFLU_RS16390	0.85	+0.4
3,717,629	-		PFLU_RS16390	0.85	+0.7
3,717,742	+		PFLU_RS16395	0.12	-0.8
3,717,742	+		PFLU_RS16395	0.12	-0.2
3,717,742	+		PFLU_RS16395	0.12	+0.4
3,717,742	+		PFLU_RS16395	0.12	-0.7
3,717,742	+		PFLU_RS16395	0.12	+0.1
3,717,742	+		PFLU_RS16395	0.12	-0.5
3,717,743	-		PFLU_RS16395	0.12	-1.0
3,717,743	-		PFLU_RS16395	0.12	-1.0
3,717,743	-		PFLU_RS16395	0.12	+2.0
3,717,743	-		PFLU_RS16395	0.12	+0.2
3,717,743	-		PFLU_RS16395	0.12	-0.6
3,717,743	-		PFLU_RS16395	0.12	-0.9
3,717,743	-		PFLU_RS16395	0.12	+0.2
3,717,745	+		PFLU_RS16395	0.12	-0.2
3,717,745	+		PFLU_RS16395	0.12	-0.6
3,717,745	+		PFLU_RS16395	0.12	+0.3
3,717,746	-		PFLU_RS16395	0.13	-1.2
3,717,767	-		PFLU_RS16395	0.17	-0.5
3,717,767	-		PFLU_RS16395	0.17	-0.3
3,717,795	+		PFLU_RS16395	0.24	+0.8
3,717,796	-		PFLU_RS16395	0.24	-0.0
3,718,054	+		PFLU_RS16395	0.82	+0.5
3,718,055	-		PFLU_RS16395	0.82	-0.5
3,718,120	+				-1.5
3,718,121	-				-0.6
3,718,121	-				-1.4
3,718,131	+				-0.6
3,718,131	+				-0.6
3,718,131	+				+0.8
3,718,131	+				+0.5
3,718,131	+				-0.7
3,718,132	-				+1.8
3,718,132	-				-1.1
3,718,132	-				-0.2
3,718,132	-				-3.0
3,718,132	-				-0.3
3,718,132	-				-1.2
3,718,132	-				-0.3
3,718,132	-				-0.2
3,718,132	-				-0.2
3,718,132	-				-0.3
3,718,157	-				+1.3
3,718,250	+				-0.3
3,718,251	-				+1.3
3,718,251	-				-0.2
3,718,251	-				-0.2
3,718,251	-				-0.2
3,718,251	-				+0.8
3,718,337	+		PFLU_RS16400	0.16	+0.6
3,718,337	+		PFLU_RS16400	0.16	-0.2
3,718,337	+		PFLU_RS16400	0.16	-0.7
3,718,337	+		PFLU_RS16400	0.16	-0.6
3,718,338	-		PFLU_RS16400	0.16	-0.2
3,718,338	-		PFLU_RS16400	0.16	-1.3
3,718,338	-		PFLU_RS16400	0.16	+0.8
3,718,338	-		PFLU_RS16400	0.16	+0.6
3,718,338	-		PFLU_RS16400	0.16	+2.1
3,718,339	+		PFLU_RS16400	0.16	-0.2
3,718,339	+		PFLU_RS16400	0.16	-0.6
3,718,339	+		PFLU_RS16400	0.16	+1.0
3,718,339	+		PFLU_RS16400	0.16	+0.2
3,718,339	+		PFLU_RS16400	0.16	-0.0
3,718,340	-		PFLU_RS16400	0.16	+0.3
3,718,340	-		PFLU_RS16400	0.16	-0.2
3,718,340	-		PFLU_RS16400	0.16	+0.1
3,718,340	-		PFLU_RS16400	0.16	+0.5
3,718,340	-		PFLU_RS16400	0.16	+0.2
3,718,511	+		PFLU_RS16400	0.33	-0.4
3,718,512	-		PFLU_RS16400	0.33	+1.0
3,718,512	-		PFLU_RS16400	0.33	-0.9
3,718,517	+		PFLU_RS16400	0.34	+0.5
3,718,517	+		PFLU_RS16400	0.34	+0.3
3,718,517	+		PFLU_RS16400	0.34	+1.7
3,718,518	-		PFLU_RS16400	0.34	-1.0
3,718,518	-		PFLU_RS16400	0.34	+1.1
3,718,518	-		PFLU_RS16400	0.34	+0.8
3,718,518	-		PFLU_RS16400	0.34	-0.4
3,718,540	+		PFLU_RS16400	0.36	-0.7
3,718,540	+		PFLU_RS16400	0.36	-0.7
3,718,541	-		PFLU_RS16400	0.36	+0.8
3,718,625	+		PFLU_RS16400	0.45	+0.8
3,718,625	+		PFLU_RS16400	0.45	+0.8
3,718,637	+		PFLU_RS16400	0.46	-2.3
3,718,637	+		PFLU_RS16400	0.46	-0.9
3,718,637	+		PFLU_RS16400	0.46	+0.3
3,718,638	-		PFLU_RS16400	0.46	-1.0
3,718,638	-		PFLU_RS16400	0.46	+0.4
3,718,638	-		PFLU_RS16400	0.46	+1.5