Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15565

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,497,535	+		PFLU_RS15560	0.75	-1.4
3,497,536	-		PFLU_RS15560	0.75	-0.2
3,497,542	+		PFLU_RS15560	0.75	-0.5
3,497,556	+		PFLU_RS15560	0.76	+1.5
3,497,556	+		PFLU_RS15560	0.76	-0.3
3,497,556	+		PFLU_RS15560	0.76	-1.3
3,497,556	+		PFLU_RS15560	0.76	+0.1
3,497,557	-		PFLU_RS15560	0.76	+1.2
3,497,557	-		PFLU_RS15560	0.76	-0.3
3,497,671	-		PFLU_RS15560	0.80	+1.4
3,497,671	-		PFLU_RS15560	0.80	+0.1
3,497,709	+		PFLU_RS15560	0.82	+0.2
3,497,709	+		PFLU_RS15560	0.82	-0.3
3,497,710	-		PFLU_RS15560	0.82	+0.8
3,497,721	+		PFLU_RS15560	0.82	+0.4
3,497,721	+		PFLU_RS15560	0.82	-1.0
3,497,721	+		PFLU_RS15560	0.82	+0.1
3,497,722	-		PFLU_RS15560	0.82	-0.2
3,497,722	-		PFLU_RS15560	0.82	-2.2
3,497,722	-		PFLU_RS15560	0.82	-0.8
3,497,722	-		PFLU_RS15560	0.82	+1.2
3,497,722	-		PFLU_RS15560	0.82	+0.4
3,497,835	+		PFLU_RS15560	0.86	-0.8
3,497,835	+		PFLU_RS15560	0.86	+0.1
3,497,835	+		PFLU_RS15560	0.86	+1.3
3,497,836	-		PFLU_RS15560	0.86	-0.5
3,497,950	+				-0.2
3,497,980	+				+0.5
3,497,981	-				+1.3
3,497,981	-				-0.2
3,497,981	-				-0.4
3,497,988	+				+0.8
3,498,007	+				-1.4
3,498,061	-				+1.2
3,498,061	-				+0.8
3,498,209	-				-1.5
3,498,209	-				-0.5
3,498,229	+				-2.0
3,498,318	+				-2.3
3,498,319	-				-0.5
3,498,319	-				-0.6
3,498,482	+		PFLU_RS15565	0.28	+0.6
3,498,483	-		PFLU_RS15565	0.28	-0.3
3,498,483	-		PFLU_RS15565	0.28	+0.6
3,498,483	-		PFLU_RS15565	0.28	+0.6
3,498,483	-		PFLU_RS15565	0.28	-0.5
3,498,483	-		PFLU_RS15565	0.28	-0.4
3,498,524	-		PFLU_RS15565	0.33	+1.8
3,498,524	-		PFLU_RS15565	0.33	+1.4
3,498,552	+		PFLU_RS15565	0.37	+0.3
3,498,553	-		PFLU_RS15565	0.37	-1.2
3,498,650	-		PFLU_RS15565	0.50	+1.8
3,498,907	+		PFLU_RS15565	0.84	+0.8
3,498,907	+		PFLU_RS15565	0.84	+1.1
3,498,908	-		PFLU_RS15565	0.84	+0.8
3,498,992	-				-0.2
3,499,003	+				+0.3
3,499,004	-				+1.2
3,499,021	+				-0.8
3,499,021	+				+1.4
3,499,021	+				+0.1
3,499,021	+				+2.4
3,499,022	-				-1.2
3,499,022	-				-1.0
3,499,022	-				-0.6
3,499,022	-				+0.0
3,499,053	+				-0.3
3,499,053	+				-1.0
3,499,053	+				-1.2
3,499,161	-				+0.0
3,499,161	-				-0.0
3,499,337	+		PFLU_RS15570	0.21	-0.9
3,499,338	-		PFLU_RS15570	0.22	+0.1
3,499,414	-		PFLU_RS15570	0.27	-0.8
3,499,463	+		PFLU_RS15570	0.30	-0.1
3,499,463	+		PFLU_RS15570	0.30	-0.2
3,499,464	-		PFLU_RS15570	0.30	+1.4
3,499,464	-		PFLU_RS15570	0.30	-0.0
3,499,765	+		PFLU_RS15570	0.51	+1.1
3,499,765	+		PFLU_RS15570	0.51	+1.0
3,499,765	+		PFLU_RS15570	0.51	+0.8
3,499,765	+		PFLU_RS15570	0.51	-1.5
3,499,766	-		PFLU_RS15570	0.51	-0.2
3,499,860	+		PFLU_RS15570	0.58	+0.7
3,499,967	+		PFLU_RS15570	0.65	+1.5