Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15310

Experiment: D-Trehalose 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS15305 and PFLU_RS15310 are separated by 185 nucleotidesPFLU_RS15310 and PFLU_RS15315 are separated by 128 nucleotides PFLU_RS15305: PFLU_RS15305 - VRR-NUC domain-containing protein, at 3,429,515 to 3,431,161 _RS15305 PFLU_RS15310: PFLU_RS15310 - YgdI/YgdR family lipoprotein, at 3,431,347 to 3,431,571 _RS15310 PFLU_RS15315: PFLU_RS15315 - lipase, at 3,431,700 to 3,433,109 _RS15315 Position (kb) 3431 3432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3430.351 kb on - strand, within PFLU_RS15305at 3430.393 kb on - strand, within PFLU_RS15305at 3430.475 kb on + strand, within PFLU_RS15305at 3430.476 kb on - strand, within PFLU_RS15305at 3430.596 kb on + strand, within PFLU_RS15305at 3430.597 kb on - strand, within PFLU_RS15305at 3430.597 kb on - strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.602 kb on + strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.603 kb on - strand, within PFLU_RS15305at 3430.704 kb on + strand, within PFLU_RS15305at 3430.704 kb on + strand, within PFLU_RS15305at 3430.704 kb on + strand, within PFLU_RS15305at 3430.704 kb on + strand, within PFLU_RS15305at 3430.704 kb on + strand, within PFLU_RS15305at 3430.705 kb on - strand, within PFLU_RS15305at 3430.705 kb on - strand, within PFLU_RS15305at 3430.705 kb on - strand, within PFLU_RS15305at 3430.705 kb on - strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.953 kb on + strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3430.954 kb on - strand, within PFLU_RS15305at 3431.010 kb on - strandat 3431.010 kb on - strandat 3431.010 kb on - strandat 3431.086 kb on - strandat 3431.086 kb on - strandat 3431.122 kb on + strandat 3431.122 kb on + strandat 3431.122 kb on + strandat 3431.123 kb on - strandat 3431.123 kb on - strandat 3431.123 kb on - strandat 3431.130 kb on + strandat 3431.130 kb on + strandat 3431.130 kb on + strandat 3431.131 kb on - strandat 3431.131 kb on - strandat 3431.131 kb on - strandat 3431.131 kb on - strandat 3431.131 kb on - strandat 3431.131 kb on - strandat 3431.134 kb on - strandat 3431.134 kb on - strandat 3431.134 kb on - strandat 3431.231 kb on + strandat 3431.231 kb on + strandat 3431.231 kb on + strandat 3431.231 kb on + strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.232 kb on - strandat 3431.235 kb on + strandat 3431.236 kb on - strandat 3431.236 kb on - strandat 3431.236 kb on - strandat 3431.236 kb on - strandat 3431.257 kb on - strandat 3431.260 kb on + strandat 3431.260 kb on + strandat 3431.261 kb on - strandat 3431.292 kb on - strandat 3431.339 kb on + strandat 3431.340 kb on - strandat 3431.340 kb on - strandat 3431.340 kb on - strandat 3431.340 kb on - strandat 3431.346 kb on + strandat 3431.347 kb on - strandat 3431.347 kb on - strandat 3431.397 kb on - strand, within PFLU_RS15310at 3431.449 kb on + strand, within PFLU_RS15310at 3431.449 kb on + strand, within PFLU_RS15310at 3431.450 kb on - strand, within PFLU_RS15310at 3431.450 kb on - strand, within PFLU_RS15310at 3431.495 kb on - strand, within PFLU_RS15310at 3431.590 kb on - strandat 3431.797 kb on + strandat 3431.897 kb on + strand, within PFLU_RS15315at 3431.898 kb on - strand, within PFLU_RS15315at 3431.910 kb on - strand, within PFLU_RS15315at 3431.945 kb on + strand, within PFLU_RS15315at 3432.005 kb on + strand, within PFLU_RS15315at 3432.005 kb on + strand, within PFLU_RS15315at 3432.005 kb on + strand, within PFLU_RS15315at 3432.005 kb on + strand, within PFLU_RS15315at 3432.006 kb on - strand, within PFLU_RS15315at 3432.118 kb on + strand, within PFLU_RS15315at 3432.118 kb on + strand, within PFLU_RS15315at 3432.118 kb on + strand, within PFLU_RS15315at 3432.119 kb on - strand, within PFLU_RS15315at 3432.261 kb on - strand, within PFLU_RS15315at 3432.261 kb on - strand, within PFLU_RS15315at 3432.403 kb on + strand, within PFLU_RS15315at 3432.403 kb on + strand, within PFLU_RS15315at 3432.404 kb on - strand, within PFLU_RS15315at 3432.412 kb on + strand, within PFLU_RS15315at 3432.412 kb on + strand, within PFLU_RS15315at 3432.413 kb on - strand, within PFLU_RS15315at 3432.413 kb on - strand, within PFLU_RS15315at 3432.427 kb on + strand, within PFLU_RS15315at 3432.427 kb on + strand, within PFLU_RS15315at 3432.428 kb on - strand, within PFLU_RS15315at 3432.428 kb on - strand, within PFLU_RS15315at 3432.428 kb on - strand, within PFLU_RS15315at 3432.428 kb on - strand, within PFLU_RS15315at 3432.428 kb on - strand, within PFLU_RS15315at 3432.491 kb on + strand, within PFLU_RS15315at 3432.491 kb on + strand, within PFLU_RS15315at 3432.492 kb on - strand, within PFLU_RS15315

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C)
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3,430,351 - PFLU_RS15305 0.51 +2.1
3,430,393 - PFLU_RS15305 0.53 +0.8
3,430,475 + PFLU_RS15305 0.58 +1.4
3,430,476 - PFLU_RS15305 0.58 +0.5
3,430,596 + PFLU_RS15305 0.66 -1.4
3,430,597 - PFLU_RS15305 0.66 +0.1
3,430,597 - PFLU_RS15305 0.66 +1.0
3,430,602 + PFLU_RS15305 0.66 +1.8
3,430,602 + PFLU_RS15305 0.66 +0.8
3,430,602 + PFLU_RS15305 0.66 -1.5
3,430,602 + PFLU_RS15305 0.66 +0.8
3,430,602 + PFLU_RS15305 0.66 -1.4
3,430,602 + PFLU_RS15305 0.66 +0.8
3,430,602 + PFLU_RS15305 0.66 -0.7
3,430,602 + PFLU_RS15305 0.66 +0.5
3,430,602 + PFLU_RS15305 0.66 -0.2
3,430,602 + PFLU_RS15305 0.66 -1.8
3,430,602 + PFLU_RS15305 0.66 +0.6
3,430,602 + PFLU_RS15305 0.66 +0.4
3,430,602 + PFLU_RS15305 0.66 +0.1
3,430,602 + PFLU_RS15305 0.66 -1.2
3,430,602 + PFLU_RS15305 0.66 -1.2
3,430,602 + PFLU_RS15305 0.66 -0.8
3,430,602 + PFLU_RS15305 0.66 +0.1
3,430,602 + PFLU_RS15305 0.66 +1.4
3,430,603 - PFLU_RS15305 0.66 -0.2
3,430,603 - PFLU_RS15305 0.66 +0.6
3,430,603 - PFLU_RS15305 0.66 -1.4
3,430,603 - PFLU_RS15305 0.66 -0.0
3,430,603 - PFLU_RS15305 0.66 -0.6
3,430,603 - PFLU_RS15305 0.66 -0.4
3,430,603 - PFLU_RS15305 0.66 +2.3
3,430,603 - PFLU_RS15305 0.66 +0.4
3,430,603 - PFLU_RS15305 0.66 +0.8
3,430,603 - PFLU_RS15305 0.66 -0.9
3,430,603 - PFLU_RS15305 0.66 -0.4
3,430,603 - PFLU_RS15305 0.66 -0.8
3,430,603 - PFLU_RS15305 0.66 +0.8
3,430,603 - PFLU_RS15305 0.66 +0.8
3,430,704 + PFLU_RS15305 0.72 -1.5
3,430,704 + PFLU_RS15305 0.72 -0.4
3,430,704 + PFLU_RS15305 0.72 -0.5
3,430,704 + PFLU_RS15305 0.72 -1.1
3,430,704 + PFLU_RS15305 0.72 -1.8
3,430,705 - PFLU_RS15305 0.72 -0.8
3,430,705 - PFLU_RS15305 0.72 -0.7
3,430,705 - PFLU_RS15305 0.72 -0.9
3,430,705 - PFLU_RS15305 0.72 +0.3
3,430,953 + PFLU_RS15305 0.87 -0.8
3,430,953 + PFLU_RS15305 0.87 +0.6
3,430,953 + PFLU_RS15305 0.87 +0.2
3,430,953 + PFLU_RS15305 0.87 -0.2
3,430,953 + PFLU_RS15305 0.87 +0.1
3,430,953 + PFLU_RS15305 0.87 -0.7
3,430,953 + PFLU_RS15305 0.87 -0.6
3,430,953 + PFLU_RS15305 0.87 +0.8
3,430,953 + PFLU_RS15305 0.87 -1.8
3,430,953 + PFLU_RS15305 0.87 +0.6
3,430,953 + PFLU_RS15305 0.87 +0.8
3,430,953 + PFLU_RS15305 0.87 +0.4
3,430,953 + PFLU_RS15305 0.87 -1.2
3,430,953 + PFLU_RS15305 0.87 -0.3
3,430,953 + PFLU_RS15305 0.87 -0.9
3,430,953 + PFLU_RS15305 0.87 +0.6
3,430,953 + PFLU_RS15305 0.87 +0.7
3,430,953 + PFLU_RS15305 0.87 -0.2
3,430,953 + PFLU_RS15305 0.87 -0.2
3,430,953 + PFLU_RS15305 0.87 -0.1
3,430,953 + PFLU_RS15305 0.87 +1.6
3,430,953 + PFLU_RS15305 0.87 -0.7
3,430,954 - PFLU_RS15305 0.87 -0.8
3,430,954 - PFLU_RS15305 0.87 -0.6
3,430,954 - PFLU_RS15305 0.87 +1.4
3,430,954 - PFLU_RS15305 0.87 -2.2
3,430,954 - PFLU_RS15305 0.87 +0.0
3,430,954 - PFLU_RS15305 0.87 +0.3
3,430,954 - PFLU_RS15305 0.87 -1.3
3,430,954 - PFLU_RS15305 0.87 -0.1
3,430,954 - PFLU_RS15305 0.87 -2.8
3,430,954 - PFLU_RS15305 0.87 +2.4
3,430,954 - PFLU_RS15305 0.87 +0.8
3,430,954 - PFLU_RS15305 0.87 -0.0
3,430,954 - PFLU_RS15305 0.87 +1.5
3,430,954 - PFLU_RS15305 0.87 +1.6
3,430,954 - PFLU_RS15305 0.87 +0.4
3,430,954 - PFLU_RS15305 0.87 -0.8
3,430,954 - PFLU_RS15305 0.87 +0.9
3,431,010 - +0.4
3,431,010 - -0.5
3,431,010 - -2.2
3,431,086 - -1.2
3,431,086 - -0.5
3,431,122 + +0.6
3,431,122 + +0.6
3,431,122 + -0.7
3,431,123 - -0.1
3,431,123 - +1.8
3,431,123 - -0.3
3,431,130 + -0.6
3,431,130 + +0.4
3,431,130 + +1.0
3,431,131 - -1.1
3,431,131 - +0.3
3,431,131 - +0.1
3,431,131 - -0.7
3,431,131 - +0.9
3,431,131 - +0.4
3,431,134 - +0.8
3,431,134 - +0.1
3,431,134 - -0.2
3,431,231 + +1.2
3,431,231 + +0.1
3,431,231 + +2.2
3,431,231 + -0.5
3,431,232 - +1.0
3,431,232 - +0.2
3,431,232 - -0.5
3,431,232 - +0.8
3,431,232 - +0.8
3,431,232 - -1.2
3,431,232 - -0.5
3,431,235 + +0.2
3,431,236 - +1.6
3,431,236 - -0.8
3,431,236 - -0.6
3,431,236 - +0.8
3,431,257 - +0.2
3,431,260 + +0.1
3,431,260 + -2.5
3,431,261 - -0.5
3,431,292 - +0.1
3,431,339 + +0.1
3,431,340 - +0.2
3,431,340 - -1.1
3,431,340 - +0.5
3,431,340 - -0.2
3,431,346 + -0.1
3,431,347 - +0.3
3,431,347 - +0.1
3,431,397 - PFLU_RS15310 0.22 -0.5
3,431,449 + PFLU_RS15310 0.45 +0.8
3,431,449 + PFLU_RS15310 0.45 +0.2
3,431,450 - PFLU_RS15310 0.46 +3.6
3,431,450 - PFLU_RS15310 0.46 +1.1
3,431,495 - PFLU_RS15310 0.66 -0.6
3,431,590 - -1.1
3,431,797 + +0.8
3,431,897 + PFLU_RS15315 0.14 +0.1
3,431,898 - PFLU_RS15315 0.14 -0.3
3,431,910 - PFLU_RS15315 0.15 +1.6
3,431,945 + PFLU_RS15315 0.17 -0.8
3,432,005 + PFLU_RS15315 0.22 -0.2
3,432,005 + PFLU_RS15315 0.22 +0.5
3,432,005 + PFLU_RS15315 0.22 -0.1
3,432,005 + PFLU_RS15315 0.22 -0.2
3,432,006 - PFLU_RS15315 0.22 +0.2
3,432,118 + PFLU_RS15315 0.30 -0.1
3,432,118 + PFLU_RS15315 0.30 +0.4
3,432,118 + PFLU_RS15315 0.30 +0.6
3,432,119 - PFLU_RS15315 0.30 -0.7
3,432,261 - PFLU_RS15315 0.40 -0.7
3,432,261 - PFLU_RS15315 0.40 +1.1
3,432,403 + PFLU_RS15315 0.50 -0.4
3,432,403 + PFLU_RS15315 0.50 +0.6
3,432,404 - PFLU_RS15315 0.50 -0.7
3,432,412 + PFLU_RS15315 0.50 +0.8
3,432,412 + PFLU_RS15315 0.50 -0.5
3,432,413 - PFLU_RS15315 0.51 -0.4
3,432,413 - PFLU_RS15315 0.51 +1.1
3,432,427 + PFLU_RS15315 0.52 +1.3
3,432,427 + PFLU_RS15315 0.52 -1.8
3,432,428 - PFLU_RS15315 0.52 -0.4
3,432,428 - PFLU_RS15315 0.52 +1.1
3,432,428 - PFLU_RS15315 0.52 +0.0
3,432,428 - PFLU_RS15315 0.52 -0.8
3,432,428 - PFLU_RS15315 0.52 +0.1
3,432,491 + PFLU_RS15315 0.56 +1.0
3,432,491 + PFLU_RS15315 0.56 -0.5
3,432,492 - PFLU_RS15315 0.56 -0.6

Or see this region's nucleotide sequence