Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15035

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,361,497	+		PFLU_RS15030	0.44	+0.2
3,361,497	+		PFLU_RS15030	0.44	-0.1
3,361,498	-		PFLU_RS15030	0.44	+1.2
3,361,525	+		PFLU_RS15030	0.46	+0.5
3,361,525	+		PFLU_RS15030	0.46	-0.1
3,361,525	+		PFLU_RS15030	0.46	-1.1
3,361,526	-		PFLU_RS15030	0.46	-0.2
3,361,526	-		PFLU_RS15030	0.46	-0.7
3,361,526	-		PFLU_RS15030	0.46	-0.0
3,361,527	+		PFLU_RS15030	0.46	+0.7
3,361,527	+		PFLU_RS15030	0.46	+0.9
3,361,527	+		PFLU_RS15030	0.46	+0.2
3,361,527	+		PFLU_RS15030	0.46	-0.2
3,361,527	+		PFLU_RS15030	0.46	-0.0
3,361,527	+		PFLU_RS15030	0.46	-0.2
3,361,528	-		PFLU_RS15030	0.46	+0.8
3,361,528	-		PFLU_RS15030	0.46	-0.8
3,361,528	-		PFLU_RS15030	0.46	-1.5
3,361,528	-		PFLU_RS15030	0.46	-0.2
3,361,528	-		PFLU_RS15030	0.46	-3.5
3,361,528	-		PFLU_RS15030	0.46	-0.7
3,361,598	+		PFLU_RS15030	0.50	+0.0
3,361,599	-		PFLU_RS15030	0.50	-1.5
3,361,599	-		PFLU_RS15030	0.50	+0.5
3,361,609	-		PFLU_RS15030	0.51	-1.1
3,361,609	-		PFLU_RS15030	0.51	-0.2
3,361,609	-		PFLU_RS15030	0.51	+0.9
3,361,617	+		PFLU_RS15030	0.52	+0.0
3,361,617	+		PFLU_RS15030	0.52	-0.3
3,361,617	+		PFLU_RS15030	0.52	-1.5
3,361,618	-		PFLU_RS15030	0.52	-0.1
3,361,748	+		PFLU_RS15030	0.60	+1.0
3,361,748	+		PFLU_RS15030	0.60	-1.0
3,361,748	+		PFLU_RS15030	0.60	+0.8
3,361,748	+		PFLU_RS15030	0.60	+0.3
3,361,748	+		PFLU_RS15030	0.60	-1.5
3,361,749	-		PFLU_RS15030	0.60	+0.8
3,361,749	-		PFLU_RS15030	0.60	+0.8
3,361,749	-		PFLU_RS15030	0.60	-1.2
3,361,749	-		PFLU_RS15030	0.60	-2.5
3,361,791	+		PFLU_RS15030	0.62	-0.2
3,361,791	+		PFLU_RS15030	0.62	+0.8
3,361,792	-		PFLU_RS15030	0.62	+1.0
3,361,793	+		PFLU_RS15030	0.63	+0.8
3,361,794	-		PFLU_RS15030	0.63	-0.5
3,361,937	+		PFLU_RS15030	0.72	-1.8
3,361,937	+		PFLU_RS15030	0.72	+0.8
3,361,938	-		PFLU_RS15030	0.72	-0.1
3,362,109	-		PFLU_RS15030	0.82	-0.8
3,362,159	+		PFLU_RS15030	0.85	+0.0
3,362,159	+		PFLU_RS15030	0.85	+0.3
3,362,160	-		PFLU_RS15030	0.85	+0.1
3,362,160	-		PFLU_RS15030	0.85	-1.0
3,362,160	-		PFLU_RS15030	0.85	-0.5
3,362,275	+				-0.8
3,362,315	+				-0.8
3,362,315	+				-1.5
3,362,315	+				-0.9
3,362,315	+				+0.9
3,362,315	+				-1.0
3,362,315	+				-0.2
3,362,315	+				-0.2
3,362,316	-				-0.5
3,362,316	-				+0.6
3,362,316	-				-0.9
3,362,316	-				-1.2
3,362,316	-				-2.7
3,362,316	-				+0.4
3,362,316	-				-0.4
3,362,325	+				-0.1
3,362,325	+				-0.1
3,362,326	-				-0.9
3,362,326	-				-0.2
3,362,326	-				-0.7
3,362,327	+				+0.2
3,362,327	+				-0.8
3,362,327	+				+0.8
3,362,327	+				-0.3
3,362,327	+				-0.5
3,362,327	+				+2.0
3,362,327	+				+0.1
3,362,328	-				+0.3
3,362,328	-				-0.4
3,362,328	-				+0.8
3,362,328	-				+0.2
3,362,328	-				-0.6
3,362,328	-				-1.2
3,362,328	-				+2.0
3,362,328	-				+1.2
3,362,398	+				+1.2
3,362,399	-				+0.3
3,362,475	-				-0.7
3,362,602	+		PFLU_RS15035	0.24	+1.6
3,362,617	+		PFLU_RS15035	0.27	+0.8
3,362,618	-		PFLU_RS15035	0.27	+0.3
3,362,643	+		PFLU_RS15035	0.31	+0.8
3,362,643	+		PFLU_RS15035	0.31	-1.0
3,362,803	+		PFLU_RS15035	0.57	+0.6
3,362,803	+		PFLU_RS15035	0.57	-0.2
3,362,804	-		PFLU_RS15035	0.58	+0.9
3,362,804	-		PFLU_RS15035	0.58	+1.0
3,362,804	-		PFLU_RS15035	0.58	+0.9
3,362,804	-		PFLU_RS15035	0.58	-0.9
3,362,918	-		PFLU_RS15035	0.76	-0.4
3,362,947	+		PFLU_RS15035	0.81	+1.1
3,362,948	-		PFLU_RS15035	0.81	-0.1
3,362,948	-		PFLU_RS15035	0.81	+0.5
3,363,016	+				+1.5
3,363,034	+				+1.5
3,363,034	+				-0.5
3,363,034	+				-0.5
3,363,034	+				-0.0
3,363,035	-				+1.8
3,363,035	-				-0.1
3,363,035	-				-1.0
3,363,035	-				+0.8
3,363,038	+				+0.3
3,363,038	+				-0.8
3,363,206	+		PFLU_RS15040	0.30	+0.0
3,363,206	+		PFLU_RS15040	0.30	-0.3
3,363,206	+		PFLU_RS15040	0.30	-1.1
3,363,207	-		PFLU_RS15040	0.30	-0.8
3,363,207	-		PFLU_RS15040	0.30	-0.5
3,363,207	-		PFLU_RS15040	0.30	+0.2
3,363,207	-		PFLU_RS15040	0.30	-0.9
3,363,320	+		PFLU_RS15040	0.54	-0.4
3,363,459	-		PFLU_RS15040	0.85	+0.8
3,363,534	+				-1.2
3,363,535	-				+0.3
3,363,536	+				-0.5
3,363,536	+				-0.3
3,363,536	+				-0.2
3,363,536	+				+0.5
3,363,537	-				+2.1
3,363,537	-				-1.0
3,363,537	-				-0.8
3,363,537	-				-1.0
3,363,830	+		PFLU_RS15045	0.28	-0.4
3,363,850	+		PFLU_RS15045	0.30	-0.6
3,363,851	-		PFLU_RS15045	0.30	-1.1
3,363,851	-		PFLU_RS15045	0.30	-0.6
3,363,895	+		PFLU_RS15045	0.34	+0.6
3,363,895	+		PFLU_RS15045	0.34	+0.0
3,363,896	-		PFLU_RS15045	0.34	+1.4
3,363,896	-		PFLU_RS15045	0.34	+0.8
3,363,896	-		PFLU_RS15045	0.34	-1.2
3,363,896	-		PFLU_RS15045	0.34	+0.0
3,363,896	-		PFLU_RS15045	0.34	-1.8
3,363,898	+		PFLU_RS15045	0.34	-0.8
3,363,898	+		PFLU_RS15045	0.34	-1.0
3,363,899	-		PFLU_RS15045	0.34	-0.1
3,363,899	-		PFLU_RS15045	0.34	-0.8
3,363,899	-		PFLU_RS15045	0.34	+0.8
3,363,961	+		PFLU_RS15045	0.40	+0.0
3,364,042	+		PFLU_RS15045	0.48	-1.2