Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15025

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,359,314	+		PFLU_RS15020	0.34	+1.0
3,359,314	+		PFLU_RS15020	0.34	+1.2
3,359,314	+		PFLU_RS15020	0.34	-0.6
3,359,315	-		PFLU_RS15020	0.34	-0.4
3,359,432	+		PFLU_RS15020	0.47	+0.8
3,359,432	+		PFLU_RS15020	0.47	-0.4
3,359,433	-		PFLU_RS15020	0.47	-0.6
3,359,451	+		PFLU_RS15020	0.49	+0.8
3,359,451	+		PFLU_RS15020	0.49	-0.2
3,359,451	+		PFLU_RS15020	0.49	+1.5
3,359,451	+		PFLU_RS15020	0.49	-0.8
3,359,452	-		PFLU_RS15020	0.49	-0.1
3,359,452	-		PFLU_RS15020	0.49	+0.1
3,359,452	-		PFLU_RS15020	0.49	-0.7
3,359,452	-		PFLU_RS15020	0.49	+1.0
3,359,470	+		PFLU_RS15020	0.51	+0.9
3,359,474	+		PFLU_RS15020	0.51	+0.0
3,359,475	-		PFLU_RS15020	0.51	-1.8
3,359,475	-		PFLU_RS15020	0.51	-0.4
3,359,475	-		PFLU_RS15020	0.51	-1.2
3,359,475	-		PFLU_RS15020	0.51	+0.2
3,359,497	-		PFLU_RS15020	0.54	+0.8
3,359,587	-		PFLU_RS15020	0.63	-0.0
3,359,697	+		PFLU_RS15020	0.75	+1.2
3,359,698	-		PFLU_RS15020	0.75	-0.4
3,359,744	+		PFLU_RS15020	0.80	-0.1
3,359,860	+				+0.8
3,359,860	+				-0.7
3,359,861	-				+0.8
3,359,964	+				-0.2
3,360,075	+				+0.2
3,360,291	-		PFLU_RS15025	0.36	+0.2
3,360,312	+		PFLU_RS15025	0.39	+0.2
3,360,313	-		PFLU_RS15025	0.39	+0.5
3,360,404	+		PFLU_RS15025	0.50	+1.6
3,360,404	+		PFLU_RS15025	0.50	-0.8
3,360,405	-		PFLU_RS15025	0.51	+0.1
3,360,405	-		PFLU_RS15025	0.51	-1.5
3,360,405	-		PFLU_RS15025	0.51	+0.7
3,360,442	-		PFLU_RS15025	0.55	-0.5
3,360,442	-		PFLU_RS15025	0.55	+1.8
3,360,442	-		PFLU_RS15025	0.55	+1.0
3,360,445	+		PFLU_RS15025	0.56	+0.4
3,360,567	+		PFLU_RS15025	0.71	+1.8
3,360,567	+		PFLU_RS15025	0.71	+0.5
3,360,742	+				-0.2
3,360,742	+				-0.5
3,360,743	-				+0.8
3,360,743	-				-2.0
3,360,759	-				+1.4
3,360,771	-				-0.5
3,360,779	-				+0.4
3,360,815	-				-0.6
3,361,146	+		PFLU_RS15030	0.22	-0.2
3,361,148	+		PFLU_RS15030	0.22	-2.0
3,361,148	+		PFLU_RS15030	0.22	-1.4
3,361,148	+		PFLU_RS15030	0.22	-1.6
3,361,148	+		PFLU_RS15030	0.22	+1.5
3,361,148	+		PFLU_RS15030	0.22	+1.6
3,361,149	-		PFLU_RS15030	0.23	+1.0
3,361,149	-		PFLU_RS15030	0.23	+0.4
3,361,149	-		PFLU_RS15030	0.23	-1.2
3,361,345	+		PFLU_RS15030	0.35	-1.2
3,361,346	-		PFLU_RS15030	0.35	+0.2
3,361,356	+		PFLU_RS15030	0.35	+1.4
3,361,357	-		PFLU_RS15030	0.35	-0.4
3,361,409	+		PFLU_RS15030	0.39	-0.8
3,361,497	+		PFLU_RS15030	0.44	+0.2
3,361,497	+		PFLU_RS15030	0.44	-0.1
3,361,498	-		PFLU_RS15030	0.44	+1.2
3,361,525	+		PFLU_RS15030	0.46	+0.5
3,361,525	+		PFLU_RS15030	0.46	-0.1
3,361,525	+		PFLU_RS15030	0.46	-1.1
3,361,526	-		PFLU_RS15030	0.46	-0.2
3,361,526	-		PFLU_RS15030	0.46	-0.7
3,361,526	-		PFLU_RS15030	0.46	-0.0
3,361,527	+		PFLU_RS15030	0.46	+0.7
3,361,527	+		PFLU_RS15030	0.46	+0.9
3,361,527	+		PFLU_RS15030	0.46	+0.2
3,361,527	+		PFLU_RS15030	0.46	-0.2
3,361,527	+		PFLU_RS15030	0.46	-0.0
3,361,527	+		PFLU_RS15030	0.46	-0.2
3,361,528	-		PFLU_RS15030	0.46	+0.8
3,361,528	-		PFLU_RS15030	0.46	-0.8
3,361,528	-		PFLU_RS15030	0.46	-1.5
3,361,528	-		PFLU_RS15030	0.46	-0.2
3,361,528	-		PFLU_RS15030	0.46	-3.5
3,361,528	-		PFLU_RS15030	0.46	-0.7
3,361,598	+		PFLU_RS15030	0.50	+0.0
3,361,599	-		PFLU_RS15030	0.50	-1.5
3,361,599	-		PFLU_RS15030	0.50	+0.5
3,361,609	-		PFLU_RS15030	0.51	-1.1
3,361,609	-		PFLU_RS15030	0.51	-0.2
3,361,609	-		PFLU_RS15030	0.51	+0.9
3,361,617	+		PFLU_RS15030	0.52	+0.0
3,361,617	+		PFLU_RS15030	0.52	-0.3
3,361,617	+		PFLU_RS15030	0.52	-1.5
3,361,618	-		PFLU_RS15030	0.52	-0.1
3,361,748	+		PFLU_RS15030	0.60	+1.0
3,361,748	+		PFLU_RS15030	0.60	-1.0
3,361,748	+		PFLU_RS15030	0.60	+0.8
3,361,748	+		PFLU_RS15030	0.60	+0.3
3,361,748	+		PFLU_RS15030	0.60	-1.5
3,361,749	-		PFLU_RS15030	0.60	+0.8
3,361,749	-		PFLU_RS15030	0.60	+0.8
3,361,749	-		PFLU_RS15030	0.60	-1.2
3,361,749	-		PFLU_RS15030	0.60	-2.5