Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15005

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,356,753	+		PFLU_RS15000	0.36	-0.8
3,356,754	-		PFLU_RS15000	0.36	-1.7
3,356,754	-		PFLU_RS15000	0.36	+0.1
3,356,892	+		PFLU_RS15000	0.48	-0.4
3,356,892	+		PFLU_RS15000	0.48	+0.8
3,356,892	+		PFLU_RS15000	0.48	-0.5
3,356,893	-		PFLU_RS15000	0.49	-0.4
3,356,893	-		PFLU_RS15000	0.49	-2.2
3,356,893	-		PFLU_RS15000	0.49	+0.8
3,357,209	+		PFLU_RS15000	0.78	-0.4
3,357,209	+		PFLU_RS15000	0.78	+1.4
3,357,209	+		PFLU_RS15000	0.78	+0.0
3,357,444	+				-0.6
3,357,445	-				-0.2
3,357,445	-				+1.4
3,357,445	-				+0.8
3,357,445	-				+1.8
3,357,482	-				+0.6
3,357,538	+		PFLU_RS15005	0.34	+1.1
3,357,539	-		PFLU_RS15005	0.34	+0.5
3,357,668	+				+0.8
3,357,668	+				-0.4
3,357,690	+				+1.9
3,357,690	+				-0.0
3,357,690	+				+0.6
3,357,690	+				+1.2
3,357,690	+				+1.5
3,357,690	+				-0.2
3,357,690	+				+0.9
3,357,690	+				+0.0
3,357,690	+				-1.2
3,357,690	+				-1.0
3,357,690	+				+0.1
3,357,690	+				-0.2
3,357,690	+				+0.1
3,357,690	+				-2.5
3,357,690	+				+0.8
3,357,691	-				-0.9
3,357,691	-				+0.3
3,357,691	-				+1.5
3,357,691	-				-0.0
3,357,691	-				-1.0
3,357,691	-				+0.1
3,357,691	-				-0.1
3,357,691	-				-1.0
3,357,691	-				-0.5
3,357,691	-				-0.9
3,357,691	-				-0.3
3,357,691	-				-0.0
3,357,691	-				+0.8
3,357,691	-				+0.1
3,357,691	-				-0.6
3,357,691	-				+3.1
3,357,691	-				-1.2
3,357,691	-				+1.1
3,357,691	-				+1.6
3,357,691	-				+1.8
3,357,691	-				+0.8
3,357,691	-				-0.4
3,357,691	-				-0.4
3,357,691	-				-1.4
3,357,691	-				+0.4
3,357,691	-				+0.6
3,357,691	-				+0.8
3,357,691	-				+1.2
3,357,691	-				-0.2
3,357,691	-				-0.3
3,357,696	+				-0.4
3,357,696	+				+1.2
3,357,696	+				-0.8
3,357,697	-				-3.7
3,357,699	+				+0.2
3,357,700	-				-0.6
3,357,874	+		PFLU_RS15010	0.46	-1.8
3,357,874	+		PFLU_RS15010	0.46	+0.0
3,357,875	-		PFLU_RS15010	0.46	-0.4
3,357,877	+		PFLU_RS15010	0.47	+0.7
3,357,887	+		PFLU_RS15010	0.49	-0.0
3,357,887	+		PFLU_RS15010	0.49	-1.8
3,357,887	+		PFLU_RS15010	0.49	-0.0
3,357,960	-		PFLU_RS15010	0.67	+0.4
3,357,982	+		PFLU_RS15010	0.73	-0.4
3,357,982	+		PFLU_RS15010	0.73	-0.1
3,358,009	+		PFLU_RS15010	0.80	+0.2
3,358,009	+		PFLU_RS15010	0.80	-0.2
3,358,009	+		PFLU_RS15010	0.80	-0.6
3,358,010	-		PFLU_RS15010	0.80	-1.0
3,358,010	-		PFLU_RS15010	0.80	-0.1
3,358,010	-		PFLU_RS15010	0.80	-0.2
3,358,011	+		PFLU_RS15010	0.80	+0.8
3,358,047	+		PFLU_RS15010	0.89	-1.1
3,358,358	+		PFLU_RS15015	0.32	-0.0
3,358,358	+		PFLU_RS15015	0.32	+1.6
3,358,358	+		PFLU_RS15015	0.32	+0.8
3,358,359	-		PFLU_RS15015	0.32	-1.8
3,358,359	-		PFLU_RS15015	0.32	+0.2
3,358,359	-		PFLU_RS15015	0.32	+0.3
3,358,362	+		PFLU_RS15015	0.33	+0.2
3,358,362	+		PFLU_RS15015	0.33	+0.6
3,358,363	-		PFLU_RS15015	0.33	+0.8
3,358,363	-		PFLU_RS15015	0.33	-0.6