Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14420

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,231,129	+				+2.4
3,231,129	+				+0.6
3,231,129	+				+0.5
3,231,129	+				-0.4
3,231,129	+				-1.5
3,231,130	-				-0.4
3,231,130	-				-0.8
3,231,130	-				+1.3
3,231,130	-				-0.5
3,231,130	-				-1.0
3,231,130	-				-0.4
3,231,130	-				+1.4
3,231,133	+				-0.6
3,231,133	+				-0.4
3,231,133	+				-1.5
3,231,133	+				-0.1
3,231,133	+				-0.6
3,231,133	+				+1.4
3,231,133	+				+0.3
3,231,133	+				-2.4
3,231,133	+				+0.5
3,231,133	+				+1.0
3,231,133	+				-3.1
3,231,133	+				+0.0
3,231,133	+				-0.5
3,231,133	+				+1.1
3,231,134	-				+0.7
3,231,134	-				+0.3
3,231,134	-				+0.2
3,231,134	-				+0.2
3,231,134	-				-0.2
3,231,134	-				-0.1
3,231,208	+				+0.3
3,231,208	+				-0.2
3,231,209	-				+0.7
3,231,434	-				+0.3
3,231,437	+				+0.1
3,231,504	+				-1.0
3,231,504	+				+2.8
3,231,504	+				-0.6
3,231,504	+				+0.5
3,231,504	+				-0.8
3,231,504	+				-0.2
3,231,504	+				-0.2
3,231,505	-				-0.2
3,231,505	-				-0.2
3,231,505	-				-1.2
3,231,509	-				-0.2
3,231,549	+				-2.0
3,231,550	-				+0.2
3,231,561	-				-1.2
3,231,760	+				+3.1
3,231,760	+				+0.8
3,231,761	-				-1.8
3,231,761	-				+0.4
3,231,761	-				-0.2
3,231,761	-				-1.2
3,231,761	-				+0.8
3,231,761	-				-0.2
3,231,797	-				+0.0
3,231,797	-				+0.5
3,231,797	-				+0.0
3,231,797	-				-1.2
3,231,797	-				-1.1
3,231,797	-				-1.3
3,231,797	-				+0.2
3,231,797	-				+0.0
3,231,797	-				+0.8
3,231,797	-				-1.0
3,231,797	-				+0.8
3,231,837	-				-0.1
3,231,949	-				+1.8
3,231,949	-				+1.4
3,231,949	-				-0.7
3,231,949	-				-1.0
3,231,949	-				-0.2
3,231,949	-				+0.4
3,231,949	-				-0.8
3,231,949	-				+0.5
3,232,049	+				+0.9
3,232,105	+				+1.5
3,232,105	+				-0.2
3,232,105	+				-2.0
3,232,106	-				+0.2
3,232,106	-				-1.2
3,232,106	-				-1.5
3,232,107	+				+0.4
3,232,108	-				-1.4
3,232,109	+				-0.5
3,232,118	-				+1.5
3,232,118	-				+0.5
3,232,145	+				+0.4
3,232,146	-				-0.4
3,232,146	-				+0.4
3,232,153	+				-0.5
3,232,153	+				+0.5
3,232,153	+				+0.3
3,232,154	-				-0.1
3,232,156	+				+0.3
3,232,172	+				-0.4
3,232,349	+		PFLU_RS14420	0.38	+1.1
3,232,357	-		PFLU_RS14420	0.40	+0.3
3,232,357	-		PFLU_RS14420	0.40	+1.1
3,232,487	+		PFLU_RS14420	0.61	+0.8
3,232,487	+		PFLU_RS14420	0.61	-0.0
3,232,488	-		PFLU_RS14420	0.61	-0.1
3,232,488	-		PFLU_RS14420	0.61	+0.9
3,232,633	+		PFLU_RS14420	0.85	-0.4
3,232,696	+				-0.1
3,232,707	-				+0.1
3,232,765	-				-1.2
3,232,955	+		PFLU_RS14425	0.20	-0.0
3,232,955	+		PFLU_RS14425	0.20	-0.8
3,232,956	-		PFLU_RS14425	0.20	-2.4
3,232,956	-		PFLU_RS14425	0.20	-1.8
3,232,956	-		PFLU_RS14425	0.20	-0.2
3,232,956	-		PFLU_RS14425	0.20	-2.5
3,232,956	-		PFLU_RS14425	0.20	-0.0
3,232,956	-		PFLU_RS14425	0.20	-0.2
3,233,044	+		PFLU_RS14425	0.31	-0.8
3,233,044	+		PFLU_RS14425	0.31	-0.0
3,233,045	-		PFLU_RS14425	0.31	-0.1
3,233,045	-		PFLU_RS14425	0.31	+1.0
3,233,045	-		PFLU_RS14425	0.31	+0.5
3,233,045	-		PFLU_RS14425	0.31	+1.8
3,233,045	-		PFLU_RS14425	0.31	+0.6
3,233,237	+		PFLU_RS14425	0.55	+0.2
3,233,237	+		PFLU_RS14425	0.55	-1.1
3,233,303	+		PFLU_RS14425	0.64	-0.8
3,233,303	+		PFLU_RS14425	0.64	+0.1
3,233,303	+		PFLU_RS14425	0.64	-1.2
3,233,344	-		PFLU_RS14425	0.69	+0.5
3,233,344	-		PFLU_RS14425	0.69	+0.3
3,233,409	+		PFLU_RS14425	0.77	+0.8
3,233,409	+		PFLU_RS14425	0.77	-0.4
3,233,409	+		PFLU_RS14425	0.77	+0.8
3,233,409	+		PFLU_RS14425	0.77	-0.8
3,233,409	+		PFLU_RS14425	0.77	+2.4
3,233,410	-		PFLU_RS14425	0.77	+1.0
3,233,410	-		PFLU_RS14425	0.77	-2.0
3,233,410	-		PFLU_RS14425	0.77	+0.4
3,233,410	-		PFLU_RS14425	0.77	+0.8
3,233,410	-		PFLU_RS14425	0.77	+0.3
3,233,410	-		PFLU_RS14425	0.77	-0.7
3,233,410	-		PFLU_RS14425	0.77	+0.5
3,233,410	-		PFLU_RS14425	0.77	-0.3
3,233,410	-		PFLU_RS14425	0.77	+0.1
3,233,416	+		PFLU_RS14425	0.78	-0.5
3,233,417	-		PFLU_RS14425	0.78	-1.5
3,233,635	+				-1.1