Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14050

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,146,230	+		PFLU_RS14040	0.53	-0.9
3,146,231	-		PFLU_RS14040	0.53	-0.2
3,146,231	-		PFLU_RS14040	0.53	+3.1
3,146,428	+		PFLU_RS14040	0.83	+0.4
3,146,428	+		PFLU_RS14040	0.83	-0.1
3,146,428	+		PFLU_RS14040	0.83	+0.9
3,146,428	+		PFLU_RS14040	0.83	-0.4
3,146,428	+		PFLU_RS14040	0.83	+0.6
3,146,429	-		PFLU_RS14040	0.83	-1.1
3,146,429	-		PFLU_RS14040	0.83	-0.1
3,146,429	-		PFLU_RS14040	0.83	+0.8
3,146,429	-		PFLU_RS14040	0.83	-1.2
3,146,518	+				+0.7
3,146,536	+				-0.2
3,146,547	+				+0.4
3,146,548	-				-1.4
3,146,548	-				-0.4
3,146,556	+				-0.2
3,146,557	-				+1.1
3,146,571	+				-1.0
3,146,641	+		PFLU_RS14045	0.26	+0.1
3,146,815	+		PFLU_RS14045	0.72	+3.0
3,146,816	-		PFLU_RS14045	0.72	-1.1
3,146,884	+		PFLU_RS14045	0.90	-1.5
3,146,884	+		PFLU_RS14045	0.90	+0.4
3,146,885	-				-0.2
3,146,885	-				+0.6
3,146,896	+				+1.1
3,146,896	+				-0.6
3,146,896	+				-0.7
3,146,896	+				-0.0
3,146,896	+				-0.8
3,146,896	+				-2.2
3,146,897	-				-0.3
3,146,897	-				+0.5
3,146,897	-				-0.5
3,146,897	-				-0.2
3,146,897	-				+2.7
3,146,897	-				+0.1
3,146,897	-				-1.2
3,146,897	-				+0.0
3,146,943	+				-0.3
3,146,944	-				-0.4
3,146,944	-				-1.4
3,146,944	-				-1.5
3,146,944	-				-0.8
3,146,944	-				+0.1
3,147,109	-		PFLU_RS14050	0.56	-0.2
3,147,118	+		PFLU_RS14050	0.59	+1.1
3,147,119	-		PFLU_RS14050	0.59	+1.3
3,147,254	+				-0.2
3,147,254	+				+0.8
3,147,254	+				+0.5
3,147,254	+				+0.0
3,147,254	+				-0.6
3,147,255	-				-1.4
3,147,255	-				+0.8
3,147,255	-				+0.5
3,147,255	-				+1.2
3,147,255	-				-0.5
3,147,255	-				-0.5
3,147,255	-				+0.7
3,147,496	-				-0.1
3,147,699	+		PFLU_RS14055	0.14	+1.5
3,147,699	+		PFLU_RS14055	0.14	+1.4
3,147,699	+		PFLU_RS14055	0.14	-1.1
3,147,700	-		PFLU_RS14055	0.14	-0.2
3,147,732	+		PFLU_RS14055	0.15	+1.0
3,147,733	-		PFLU_RS14055	0.15	+0.4
3,147,903	-		PFLU_RS14055	0.21	-0.8
3,147,967	-		PFLU_RS14055	0.23	-0.9
3,147,969	+		PFLU_RS14055	0.23	+0.8
3,147,969	+		PFLU_RS14055	0.23	-0.4
3,147,969	+		PFLU_RS14055	0.23	+1.8
3,147,969	+		PFLU_RS14055	0.23	+0.3
3,147,969	+		PFLU_RS14055	0.23	-1.1
3,147,970	-		PFLU_RS14055	0.23	+0.5
3,147,970	-		PFLU_RS14055	0.23	+0.5
3,147,970	-		PFLU_RS14055	0.23	-1.0
3,147,970	-		PFLU_RS14055	0.23	+0.5
3,147,970	-		PFLU_RS14055	0.23	-0.2
3,147,970	-		PFLU_RS14055	0.23	-0.4
3,147,996	+		PFLU_RS14055	0.24	+0.4
3,147,996	+		PFLU_RS14055	0.24	+2.4
3,147,997	-		PFLU_RS14055	0.24	+0.1
3,147,997	-		PFLU_RS14055	0.24	+0.0
3,147,997	-		PFLU_RS14055	0.24	+1.8
3,147,997	-		PFLU_RS14055	0.24	-0.5
3,147,998	+		PFLU_RS14055	0.24	+1.6
3,147,999	-		PFLU_RS14055	0.24	-1.2
3,148,026	+		PFLU_RS14055	0.25	-0.4
3,148,027	-		PFLU_RS14055	0.25	+1.5
3,148,027	-		PFLU_RS14055	0.25	-0.1
3,148,027	-		PFLU_RS14055	0.25	+0.4
3,148,157	+		PFLU_RS14055	0.29	+1.8
3,148,210	+		PFLU_RS14055	0.31	-0.3