Experiment: D-Trehalose 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS13930 and PFLU_RS13935 are separated by 121 nucleotides PFLU_RS13935 and PFLU_RS13940 are separated by 8 nucleotides PFLU_RS13940 and PFLU_RS13945 are separated by 209 nucleotides PFLU_RS13945 and PFLU_RS13950 overlap by 1 nucleotides PFLU_RS13950 and PFLU_RS13955 are separated by 53 nucleotides PFLU_RS13955 and PFLU_RS13960 overlap by 4 nucleotides PFLU_RS13960 and PFLU_RS13965 overlap by 4 nucleotides
PFLU_RS13930: PFLU_RS13930 - hypothetical protein, at 3,132,885 to 3,133,739
_RS13930
PFLU_RS13935: PFLU_RS13935 - Com family DNA-binding transcriptional regulator, at 3,133,861 to 3,134,046
_RS13935
PFLU_RS13940: PFLU_RS13940 - hypothetical protein, at 3,134,055 to 3,134,390
_RS13940
PFLU_RS13945: PFLU_RS13945 - hypothetical protein, at 3,134,600 to 3,134,971
_RS13945
PFLU_RS13950: PFLU_RS13950 - hypothetical protein, at 3,134,971 to 3,135,309
_RS13950
PFLU_RS13955: PFLU_RS13955 - hypothetical protein, at 3,135,363 to 3,135,578
_RS13955
PFLU_RS13960: PFLU_RS13960 - hypothetical protein, at 3,135,575 to 3,135,766
_RS13960
PFLU_RS13965: PFLU_RS13965 - hypothetical protein, at 3,135,763 to 3,136,017
_RS13965
Position (kb) 3134
3135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3133.600 kb on + strand, within PFLU_RS13930 at 3133.601 kb on - strand, within PFLU_RS13930 at 3133.601 kb on - strand, within PFLU_RS13930 at 3133.603 kb on + strand, within PFLU_RS13930 at 3133.603 kb on + strand, within PFLU_RS13930 at 3133.604 kb on - strand, within PFLU_RS13930 at 3133.604 kb on - strand, within PFLU_RS13930 at 3133.637 kb on + strand, within PFLU_RS13930 at 3133.637 kb on + strand, within PFLU_RS13930 at 3133.638 kb on - strand, within PFLU_RS13930 at 3133.737 kb on + strand at 3133.737 kb on + strand at 3133.791 kb on + strand at 3133.797 kb on - strand at 3133.797 kb on - strand at 3133.797 kb on - strand at 3134.044 kb on + strand at 3134.044 kb on + strand at 3134.062 kb on + strand at 3134.063 kb on - strand at 3134.063 kb on - strand at 3134.127 kb on - strand, within PFLU_RS13940 at 3134.169 kb on + strand, within PFLU_RS13940 at 3134.180 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.200 kb on + strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.201 kb on - strand, within PFLU_RS13940 at 3134.235 kb on - strand, within PFLU_RS13940 at 3134.245 kb on + strand, within PFLU_RS13940 at 3134.259 kb on - strand, within PFLU_RS13940 at 3134.259 kb on - strand, within PFLU_RS13940 at 3134.309 kb on - strand, within PFLU_RS13940 at 3134.309 kb on - strand, within PFLU_RS13940 at 3134.309 kb on - strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.310 kb on + strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.311 kb on - strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.312 kb on + strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.313 kb on - strand, within PFLU_RS13940 at 3134.332 kb on - strand, within PFLU_RS13940 at 3134.346 kb on + strand, within PFLU_RS13940 at 3134.346 kb on + strand, within PFLU_RS13940 at 3134.346 kb on + strand, within PFLU_RS13940 at 3134.346 kb on + strand, within PFLU_RS13940 at 3134.347 kb on - strand, within PFLU_RS13940 at 3134.347 kb on - strand, within PFLU_RS13940 at 3134.347 kb on - strand, within PFLU_RS13940 at 3134.347 kb on - strand, within PFLU_RS13940 at 3134.348 kb on + strand, within PFLU_RS13940 at 3134.349 kb on - strand, within PFLU_RS13940 at 3134.349 kb on - strand, within PFLU_RS13940 at 3134.361 kb on + strand at 3134.417 kb on + strand at 3134.417 kb on + strand at 3134.417 kb on + strand at 3134.417 kb on + strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.418 kb on - strand at 3134.451 kb on + strand at 3134.464 kb on + strand at 3134.464 kb on + strand at 3134.464 kb on + strand at 3134.465 kb on - strand at 3134.465 kb on - strand at 3134.465 kb on - strand at 3134.465 kb on - strand at 3134.554 kb on + strand at 3134.554 kb on + strand at 3134.554 kb on + strand at 3134.554 kb on + strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.555 kb on - strand at 3134.560 kb on + strand at 3134.560 kb on + strand at 3134.560 kb on + strand at 3134.560 kb on + strand at 3134.561 kb on - strand at 3134.569 kb on + strand at 3134.570 kb on - strand at 3134.570 kb on - strand at 3134.588 kb on + strand at 3134.588 kb on + strand at 3134.608 kb on + strand at 3134.608 kb on + strand at 3134.902 kb on + strand, within PFLU_RS13945 at 3134.903 kb on - strand, within PFLU_RS13945 at 3134.903 kb on - strand, within PFLU_RS13945 at 3134.903 kb on - strand, within PFLU_RS13945 at 3135.139 kb on + strand, within PFLU_RS13950 at 3135.139 kb on + strand, within PFLU_RS13950 at 3135.140 kb on - strand, within PFLU_RS13950 at 3135.140 kb on - strand, within PFLU_RS13950 at 3135.140 kb on - strand, within PFLU_RS13950 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.450 kb on + strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.451 kb on - strand, within PFLU_RS13955 at 3135.507 kb on + strand, within PFLU_RS13955 at 3135.507 kb on + strand, within PFLU_RS13955 at 3135.507 kb on + strand, within PFLU_RS13955 at 3135.507 kb on + strand, within PFLU_RS13955 at 3135.508 kb on - strand, within PFLU_RS13955 at 3135.508 kb on - strand, within PFLU_RS13955 at 3135.636 kb on + strand, within PFLU_RS13960 at 3135.636 kb on + strand, within PFLU_RS13960 at 3135.930 kb on + strand, within PFLU_RS13965 at 3135.931 kb on - strand, within PFLU_RS13965 at 3135.931 kb on - strand, within PFLU_RS13965 at 3135.960 kb on + strand, within PFLU_RS13965 at 3135.960 kb on + strand, within PFLU_RS13965 at 3135.960 kb on + strand, within PFLU_RS13965 at 3135.961 kb on - strand, within PFLU_RS13965 at 3135.961 kb on - strand, within PFLU_RS13965 at 3135.961 kb on - strand, within PFLU_RS13965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C) remove 3,133,600 + PFLU_RS13930 0.84 -0.6 3,133,601 - PFLU_RS13930 0.84 -0.2 3,133,601 - PFLU_RS13930 0.84 -2.2 3,133,603 + PFLU_RS13930 0.84 -0.4 3,133,603 + PFLU_RS13930 0.84 -0.3 3,133,604 - PFLU_RS13930 0.84 +0.2 3,133,604 - PFLU_RS13930 0.84 +0.1 3,133,637 + PFLU_RS13930 0.88 -0.0 3,133,637 + PFLU_RS13930 0.88 -0.8 3,133,638 - PFLU_RS13930 0.88 -2.0 3,133,737 + -0.2 3,133,737 + +0.8 3,133,791 + -0.9 3,133,797 - +0.8 3,133,797 - +0.8 3,133,797 - -2.0 3,134,044 + +0.4 3,134,044 + +0.2 3,134,062 + -0.4 3,134,063 - -1.1 3,134,063 - -0.5 3,134,127 - PFLU_RS13940 0.21 +0.3 3,134,169 + PFLU_RS13940 0.34 +1.3 3,134,180 + PFLU_RS13940 0.37 +1.8 3,134,200 + PFLU_RS13940 0.43 +0.2 3,134,200 + PFLU_RS13940 0.43 -1.8 3,134,200 + PFLU_RS13940 0.43 -1.0 3,134,200 + PFLU_RS13940 0.43 -0.2 3,134,200 + PFLU_RS13940 0.43 +0.1 3,134,200 + PFLU_RS13940 0.43 +0.5 3,134,200 + PFLU_RS13940 0.43 -1.2 3,134,200 + PFLU_RS13940 0.43 -0.6 3,134,200 + PFLU_RS13940 0.43 -0.2 3,134,201 - PFLU_RS13940 0.43 -1.2 3,134,201 - PFLU_RS13940 0.43 +0.4 3,134,201 - PFLU_RS13940 0.43 +1.5 3,134,201 - PFLU_RS13940 0.43 -0.0 3,134,201 - PFLU_RS13940 0.43 +0.6 3,134,201 - PFLU_RS13940 0.43 +0.6 3,134,235 - PFLU_RS13940 0.54 +0.6 3,134,245 + PFLU_RS13940 0.57 -0.0 3,134,259 - PFLU_RS13940 0.61 +0.9 3,134,259 - PFLU_RS13940 0.61 -0.5 3,134,309 - PFLU_RS13940 0.76 +0.2 3,134,309 - PFLU_RS13940 0.76 +0.1 3,134,309 - PFLU_RS13940 0.76 +0.5 3,134,310 + PFLU_RS13940 0.76 -0.6 3,134,310 + PFLU_RS13940 0.76 +0.8 3,134,310 + PFLU_RS13940 0.76 +0.8 3,134,310 + PFLU_RS13940 0.76 -0.1 3,134,310 + PFLU_RS13940 0.76 +0.6 3,134,310 + PFLU_RS13940 0.76 +1.5 3,134,310 + PFLU_RS13940 0.76 -0.7 3,134,310 + PFLU_RS13940 0.76 +0.6 3,134,310 + PFLU_RS13940 0.76 +0.2 3,134,310 + PFLU_RS13940 0.76 +0.1 3,134,310 + PFLU_RS13940 0.76 +0.8 3,134,310 + PFLU_RS13940 0.76 -0.2 3,134,310 + PFLU_RS13940 0.76 -1.3 3,134,310 + PFLU_RS13940 0.76 +1.2 3,134,310 + PFLU_RS13940 0.76 -0.9 3,134,310 + PFLU_RS13940 0.76 -0.3 3,134,310 + PFLU_RS13940 0.76 -0.9 3,134,310 + PFLU_RS13940 0.76 +1.2 3,134,311 - PFLU_RS13940 0.76 -1.2 3,134,311 - PFLU_RS13940 0.76 -0.2 3,134,311 - PFLU_RS13940 0.76 +1.2 3,134,311 - PFLU_RS13940 0.76 +0.6 3,134,311 - PFLU_RS13940 0.76 -1.2 3,134,311 - PFLU_RS13940 0.76 +0.1 3,134,311 - PFLU_RS13940 0.76 -1.4 3,134,311 - PFLU_RS13940 0.76 -2.0 3,134,311 - PFLU_RS13940 0.76 -1.3 3,134,311 - PFLU_RS13940 0.76 +0.8 3,134,311 - PFLU_RS13940 0.76 -1.1 3,134,311 - PFLU_RS13940 0.76 +0.6 3,134,312 + PFLU_RS13940 0.76 +0.7 3,134,312 + PFLU_RS13940 0.76 -1.8 3,134,312 + PFLU_RS13940 0.76 +1.4 3,134,312 + PFLU_RS13940 0.76 -1.8 3,134,312 + PFLU_RS13940 0.76 +0.0 3,134,312 + PFLU_RS13940 0.76 +0.1 3,134,312 + PFLU_RS13940 0.76 -1.1 3,134,312 + PFLU_RS13940 0.76 +0.2 3,134,312 + PFLU_RS13940 0.76 -1.0 3,134,312 + PFLU_RS13940 0.76 +0.5 3,134,312 + PFLU_RS13940 0.76 +1.2 3,134,312 + PFLU_RS13940 0.76 -0.0 3,134,312 + PFLU_RS13940 0.76 +0.2 3,134,312 + PFLU_RS13940 0.76 +0.3 3,134,312 + PFLU_RS13940 0.76 -1.8 3,134,312 + PFLU_RS13940 0.76 -0.1 3,134,313 - PFLU_RS13940 0.77 +0.3 3,134,313 - PFLU_RS13940 0.77 -1.2 3,134,313 - PFLU_RS13940 0.77 +0.8 3,134,313 - PFLU_RS13940 0.77 +0.2 3,134,313 - PFLU_RS13940 0.77 -0.8 3,134,313 - PFLU_RS13940 0.77 -0.2 3,134,313 - PFLU_RS13940 0.77 +0.4 3,134,313 - PFLU_RS13940 0.77 -0.8 3,134,313 - PFLU_RS13940 0.77 +1.1 3,134,313 - PFLU_RS13940 0.77 -1.7 3,134,313 - PFLU_RS13940 0.77 +1.1 3,134,313 - PFLU_RS13940 0.77 +1.8 3,134,313 - PFLU_RS13940 0.77 +0.1 3,134,313 - PFLU_RS13940 0.77 -0.5 3,134,313 - PFLU_RS13940 0.77 -1.1 3,134,332 - PFLU_RS13940 0.82 -0.5 3,134,346 + PFLU_RS13940 0.87 +0.4 3,134,346 + PFLU_RS13940 0.87 +0.7 3,134,346 + PFLU_RS13940 0.87 +0.2 3,134,346 + PFLU_RS13940 0.87 +0.6 3,134,347 - PFLU_RS13940 0.87 -0.5 3,134,347 - PFLU_RS13940 0.87 +0.3 3,134,347 - PFLU_RS13940 0.87 +0.1 3,134,347 - PFLU_RS13940 0.87 -0.4 3,134,348 + PFLU_RS13940 0.87 +0.1 3,134,349 - PFLU_RS13940 0.88 +2.4 3,134,349 - PFLU_RS13940 0.88 +0.4 3,134,361 + -1.9 3,134,417 + +1.4 3,134,417 + +0.8 3,134,417 + +0.5 3,134,417 + -0.3 3,134,418 - -2.7 3,134,418 - +2.2 3,134,418 - -1.2 3,134,418 - -1.0 3,134,418 - -0.8 3,134,418 - +0.8 3,134,418 - +0.1 3,134,418 - +2.0 3,134,451 + +0.5 3,134,464 + -0.7 3,134,464 + +0.7 3,134,464 + +0.3 3,134,465 - +0.8 3,134,465 - -2.2 3,134,465 - +0.8 3,134,465 - -0.5 3,134,554 + -2.0 3,134,554 + -0.2 3,134,554 + -0.2 3,134,554 + -1.1 3,134,555 - -0.3 3,134,555 - -0.0 3,134,555 - -1.8 3,134,555 - -0.5 3,134,555 - +0.4 3,134,555 - -1.3 3,134,555 - +1.1 3,134,560 + -0.0 3,134,560 + -0.6 3,134,560 + +0.5 3,134,560 + +0.2 3,134,561 - +1.5 3,134,569 + -0.4 3,134,570 - +0.8 3,134,570 - +0.8 3,134,588 + +0.6 3,134,588 + -0.4 3,134,608 + +0.8 3,134,608 + -0.1 3,134,902 + PFLU_RS13945 0.81 +0.6 3,134,903 - PFLU_RS13945 0.81 -0.5 3,134,903 - PFLU_RS13945 0.81 +1.4 3,134,903 - PFLU_RS13945 0.81 +0.8 3,135,139 + PFLU_RS13950 0.50 +1.0 3,135,139 + PFLU_RS13950 0.50 -0.3 3,135,140 - PFLU_RS13950 0.50 -0.3 3,135,140 - PFLU_RS13950 0.50 +0.4 3,135,140 - PFLU_RS13950 0.50 -1.0 3,135,450 + PFLU_RS13955 0.40 +1.8 3,135,450 + PFLU_RS13955 0.40 -0.8 3,135,450 + PFLU_RS13955 0.40 +0.8 3,135,450 + PFLU_RS13955 0.40 -0.2 3,135,450 + PFLU_RS13955 0.40 +0.4 3,135,450 + PFLU_RS13955 0.40 +0.2 3,135,450 + PFLU_RS13955 0.40 -0.8 3,135,450 + PFLU_RS13955 0.40 +1.2 3,135,450 + PFLU_RS13955 0.40 +0.2 3,135,450 + PFLU_RS13955 0.40 -0.3 3,135,450 + PFLU_RS13955 0.40 +0.3 3,135,450 + PFLU_RS13955 0.40 -0.6 3,135,450 + PFLU_RS13955 0.40 +0.9 3,135,451 - PFLU_RS13955 0.41 +0.8 3,135,451 - PFLU_RS13955 0.41 +0.5 3,135,451 - PFLU_RS13955 0.41 -0.6 3,135,451 - PFLU_RS13955 0.41 +0.2 3,135,451 - PFLU_RS13955 0.41 -0.7 3,135,451 - PFLU_RS13955 0.41 +0.6 3,135,451 - PFLU_RS13955 0.41 +1.2 3,135,451 - PFLU_RS13955 0.41 +0.3 3,135,507 + PFLU_RS13955 0.67 +1.0 3,135,507 + PFLU_RS13955 0.67 +1.0 3,135,507 + PFLU_RS13955 0.67 -0.2 3,135,507 + PFLU_RS13955 0.67 +1.3 3,135,508 - PFLU_RS13955 0.67 +0.8 3,135,508 - PFLU_RS13955 0.67 -0.0 3,135,636 + PFLU_RS13960 0.32 +0.8 3,135,636 + PFLU_RS13960 0.32 +0.8 3,135,930 + PFLU_RS13965 0.65 +0.8 3,135,931 - PFLU_RS13965 0.66 +0.2 3,135,931 - PFLU_RS13965 0.66 +0.5 3,135,960 + PFLU_RS13965 0.77 -1.3 3,135,960 + PFLU_RS13965 0.77 -0.3 3,135,960 + PFLU_RS13965 0.77 -0.2 3,135,961 - PFLU_RS13965 0.78 -1.3 3,135,961 - PFLU_RS13965 0.78 +0.8 3,135,961 - PFLU_RS13965 0.78 +1.4
Or see this region's nucleotide sequence