Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13665

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
3,088,913	+		PFLU_RS13660	0.15	-0.8
3,088,913	+		PFLU_RS13660	0.15	-0.7
3,088,913	+		PFLU_RS13660	0.15	+0.8
3,088,913	+		PFLU_RS13660	0.15	+0.8
3,088,913	+		PFLU_RS13660	0.15	+0.7
3,088,913	+		PFLU_RS13660	0.15	+0.5
3,088,913	+		PFLU_RS13660	0.15	-0.4
3,088,913	+		PFLU_RS13660	0.15	-0.4
3,088,913	+		PFLU_RS13660	0.15	-1.1
3,088,913	+		PFLU_RS13660	0.15	-1.4
3,088,914	-		PFLU_RS13660	0.15	-1.2
3,088,914	-		PFLU_RS13660	0.15	+0.8
3,088,914	-		PFLU_RS13660	0.15	-0.8
3,088,914	-		PFLU_RS13660	0.15	+0.0
3,088,914	-		PFLU_RS13660	0.15	-0.1
3,088,914	-		PFLU_RS13660	0.15	+1.0
3,088,973	+		PFLU_RS13660	0.21	+0.1
3,088,973	+		PFLU_RS13660	0.21	+2.1
3,089,283	-		PFLU_RS13660	0.51	+1.8
3,089,283	-		PFLU_RS13660	0.51	-0.2
3,089,414	+		PFLU_RS13660	0.63	+1.6
3,089,414	+		PFLU_RS13660	0.63	+0.5
3,089,414	+		PFLU_RS13660	0.63	-0.0
3,089,414	+		PFLU_RS13660	0.63	-1.1
3,089,415	-		PFLU_RS13660	0.63	-1.3
3,089,415	-		PFLU_RS13660	0.63	-0.2
3,089,415	-		PFLU_RS13660	0.63	-0.5
3,089,415	-		PFLU_RS13660	0.63	-0.2
3,089,415	-		PFLU_RS13660	0.63	-0.4
3,089,461	+		PFLU_RS13660	0.67	-0.2
3,089,490	-		PFLU_RS13660	0.70	-0.4
3,089,501	+		PFLU_RS13660	0.71	+0.4
3,089,501	+		PFLU_RS13660	0.71	-0.8
3,089,501	+		PFLU_RS13660	0.71	+0.8
3,089,501	+		PFLU_RS13660	0.71	-0.4
3,089,501	+		PFLU_RS13660	0.71	+1.6
3,089,501	+		PFLU_RS13660	0.71	+0.6
3,089,502	-		PFLU_RS13660	0.71	+0.4
3,089,502	-		PFLU_RS13660	0.71	-0.2
3,089,502	-		PFLU_RS13660	0.71	+2.6
3,089,510	+		PFLU_RS13660	0.72	+0.7
3,089,511	-		PFLU_RS13660	0.72	-0.9
3,089,511	-		PFLU_RS13660	0.72	+0.6
3,089,531	+		PFLU_RS13660	0.74	-3.0
3,089,531	+		PFLU_RS13660	0.74	+0.3
3,089,531	+		PFLU_RS13660	0.74	+0.2
3,089,532	-		PFLU_RS13660	0.74	-0.7
3,089,532	-		PFLU_RS13660	0.74	+1.3
3,089,636	+		PFLU_RS13660	0.84	-0.4
3,089,636	+		PFLU_RS13660	0.84	+0.5
3,089,636	+		PFLU_RS13660	0.84	-0.6
3,089,636	+		PFLU_RS13660	0.84	+0.5
3,089,636	+		PFLU_RS13660	0.84	+1.0
3,089,637	-		PFLU_RS13660	0.84	-0.4
3,089,637	-		PFLU_RS13660	0.84	+1.2
3,089,668	+		PFLU_RS13660	0.87	+0.4
3,089,735	+				+0.6
3,089,735	+				-0.0
3,089,735	+				-0.8
3,089,736	-				+1.8
3,089,736	-				-1.5
3,089,736	-				-1.1
3,089,736	-				+0.1
3,089,736	-				+0.1
3,089,736	-				-1.2
3,089,736	-				-1.2
3,089,736	-				+0.5
3,089,824	+				+0.9
3,089,824	+				+0.8
3,089,824	+				+2.1
3,089,824	+				+0.4
3,089,825	-				+0.4
3,089,825	-				+0.3
3,089,825	-				-1.0
3,089,825	-				-1.0
3,089,825	-				-1.1
3,089,825	-				+0.5
3,089,825	-				+0.4
3,089,825	-				-1.5
3,089,825	-				+0.8
3,089,825	-				+1.1
3,089,825	-				+1.3
3,089,876	+				+0.7
3,089,877	-				-1.2
3,089,877	-				-0.3
3,089,877	-				-0.2
3,089,877	-				+0.3
3,089,918	+		PFLU_RS13665	0.12	+2.4
3,090,074	-		PFLU_RS13665	0.48	+1.7
3,090,296	+				-0.0
3,090,296	+				-0.3
3,090,296	+				-0.2
3,090,297	-				-0.9
3,090,314	+				+0.0
3,090,314	+				-0.2
3,090,314	+				+0.5
3,090,314	+				+0.2
3,090,315	-				-0.6
3,090,315	-				-0.6
3,090,351	+				+0.5
3,090,351	+				+0.3
3,090,351	+				-0.2
3,090,351	+				-2.2
3,090,351	+				-0.3
3,090,351	+				-0.4
3,090,351	+				+0.5
3,090,351	+				-2.2
3,090,351	+				+1.8
3,090,351	+				+0.0
3,090,351	+				+0.2
3,090,351	+				+0.6
3,090,352	-				+0.1
3,090,352	-				-0.0
3,090,352	-				+1.2
3,090,352	-				+0.4
3,090,352	-				+0.2
3,090,352	-				-0.8
3,090,352	-				+0.5
3,090,352	-				-0.2
3,090,352	-				+0.4
3,090,352	-				-0.2
3,090,352	-				-0.1
3,090,352	-				+3.1
3,090,352	-				-0.1
3,090,352	-				+1.1
3,090,355	-				-1.4
3,090,423	+				-0.8
3,090,424	-				-1.5
3,090,582	+		PFLU_RS13670	0.25	-0.2
3,090,582	+		PFLU_RS13670	0.25	-1.7
3,090,582	+		PFLU_RS13670	0.25	-0.8
3,090,583	-		PFLU_RS13670	0.26	+0.4
3,090,583	-		PFLU_RS13670	0.26	+0.8
3,090,583	-		PFLU_RS13670	0.26	+2.8
3,090,583	-		PFLU_RS13670	0.26	+1.4
3,090,583	-		PFLU_RS13670	0.26	+1.0
3,090,583	-		PFLU_RS13670	0.26	-2.4
3,090,908	-				+0.7
3,091,115	+				-1.0
3,091,115	+				-0.4
3,091,115	+				+0.1
3,091,116	-				+1.8