Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12555

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
2,834,350	+				+0.1
2,834,350	+				-0.6
2,834,350	+				+0.8
2,834,350	+				+0.9
2,834,350	+				+0.7
2,834,350	+				-0.4
2,834,350	+				-0.5
2,834,350	+				+0.0
2,834,350	+				-1.8
2,834,350	+				-0.7
2,834,350	+				-0.0
2,834,351	-				-0.7
2,834,351	-				+0.9
2,834,351	-				+2.0
2,834,351	-				+0.1
2,834,351	-				+0.9
2,834,351	-				+1.7
2,834,420	+		PFLU_RS12550	0.13	-0.8
2,834,441	+		PFLU_RS12550	0.15	+0.5
2,834,441	+		PFLU_RS12550	0.15	-1.6
2,834,441	+		PFLU_RS12550	0.15	+1.0
2,834,441	+		PFLU_RS12550	0.15	-0.3
2,834,441	+		PFLU_RS12550	0.15	-0.6
2,834,442	-		PFLU_RS12550	0.15	-1.5
2,834,442	-		PFLU_RS12550	0.15	-0.1
2,834,442	-		PFLU_RS12550	0.15	-0.0
2,834,442	-		PFLU_RS12550	0.15	+0.3
2,834,442	-		PFLU_RS12550	0.15	+0.1
2,834,442	-		PFLU_RS12550	0.15	+0.6
2,834,489	+		PFLU_RS12550	0.20	-0.1
2,834,489	+		PFLU_RS12550	0.20	-0.6
2,834,490	-		PFLU_RS12550	0.20	-1.8
2,834,490	-		PFLU_RS12550	0.20	+0.5
2,834,490	-		PFLU_RS12550	0.20	+0.1
2,834,624	+		PFLU_RS12550	0.33	-0.2
2,834,624	+		PFLU_RS12550	0.33	+0.3
2,834,624	+		PFLU_RS12550	0.33	+0.0
2,834,625	-		PFLU_RS12550	0.33	+0.9
2,834,711	-		PFLU_RS12550	0.42	+0.2
2,834,726	+		PFLU_RS12550	0.43	+0.9
2,834,727	-		PFLU_RS12550	0.43	-1.7
2,834,747	+		PFLU_RS12550	0.45	+0.4
2,834,747	+		PFLU_RS12550	0.45	-0.6
2,834,747	+		PFLU_RS12550	0.45	+1.4
2,834,747	+		PFLU_RS12550	0.45	-0.1
2,834,748	-		PFLU_RS12550	0.45	+0.3
2,834,909	+		PFLU_RS12550	0.61	+0.2
2,834,910	-		PFLU_RS12550	0.62	+1.7
2,834,996	+		PFLU_RS12550	0.70	+0.3
2,834,997	-		PFLU_RS12550	0.70	-0.1
2,835,326	+				+0.1
2,835,326	+				-0.1
2,835,326	+				+0.9
2,835,326	+				+1.3
2,835,326	+				-0.1
2,835,326	+				+1.4
2,835,326	+				-0.9
2,835,326	+				+1.5
2,835,326	+				+0.9
2,835,326	+				+0.5
2,835,326	+				+1.3
2,835,326	+				-0.7
2,835,326	+				+2.1
2,835,327	-				+0.1
2,835,327	-				+1.7
2,835,327	-				+1.3
2,835,327	-				+1.1
2,835,327	-				-0.4
2,835,327	-				+0.9
2,835,327	-				-0.5
2,835,327	-				-0.9
2,835,327	-				+0.3
2,835,327	-				-2.8
2,835,327	-				-0.8
2,835,333	+				+1.7
2,835,334	-				-0.6
2,835,640	+		PFLU_RS12555	0.41	+1.4
2,835,640	+		PFLU_RS12555	0.41	-0.7
2,835,641	-		PFLU_RS12555	0.41	-0.1
2,835,682	+		PFLU_RS12555	0.46	+1.4
2,835,682	+		PFLU_RS12555	0.46	+0.6
2,835,682	+		PFLU_RS12555	0.46	+1.3
2,835,682	+		PFLU_RS12555	0.46	+0.2
2,835,682	+		PFLU_RS12555	0.46	+0.1
2,835,682	+		PFLU_RS12555	0.46	-1.1
2,835,682	+		PFLU_RS12555	0.46	+0.9
2,835,682	+		PFLU_RS12555	0.46	+1.1
2,835,683	-		PFLU_RS12555	0.46	+0.4
2,835,683	-		PFLU_RS12555	0.46	+0.9
2,835,683	-		PFLU_RS12555	0.46	-0.1
2,835,683	-		PFLU_RS12555	0.46	+1.4
2,835,683	-		PFLU_RS12555	0.46	+0.1
2,835,772	+		PFLU_RS12555	0.58	+1.1
2,835,772	+		PFLU_RS12555	0.58	+1.0
2,835,772	+		PFLU_RS12555	0.58	+0.7
2,835,773	-		PFLU_RS12555	0.58	+0.6
2,835,773	-		PFLU_RS12555	0.58	+0.7
2,836,027	+		PFLU_RS12555	0.89	+0.4
2,836,027	+		PFLU_RS12555	0.89	-1.5
2,836,027	+		PFLU_RS12555	0.89	+0.9
2,836,027	+		PFLU_RS12555	0.89	+0.9
2,836,027	+		PFLU_RS12555	0.89	+0.8
2,836,027	+		PFLU_RS12555	0.89	+1.4
2,836,027	+		PFLU_RS12555	0.89	+0.0
2,836,027	+		PFLU_RS12555	0.89	+1.6
2,836,028	-		PFLU_RS12555	0.90	-3.2
2,836,028	-		PFLU_RS12555	0.90	+1.2
2,836,028	-		PFLU_RS12555	0.90	-0.5
2,836,028	-		PFLU_RS12555	0.90	+1.4
2,836,028	-		PFLU_RS12555	0.90	+1.3
2,836,028	-		PFLU_RS12555	0.90	-0.5
2,836,028	-		PFLU_RS12555	0.90	+2.9
2,836,028	-		PFLU_RS12555	0.90	-0.6
2,836,126	-				-0.4
2,836,132	+				-1.1
2,836,132	+				-0.3
2,836,132	+				-0.1
2,836,132	+				-0.2
2,836,133	-				+0.1
2,836,133	-				-0.1
2,836,133	-				-0.6
2,836,135	+				+0.1
2,836,135	+				-0.4
2,836,135	+				-0.5
2,836,135	+				-0.9
2,836,135	+				-0.7
2,836,135	+				-0.5
2,836,135	+				+0.9
2,836,136	-				-0.1
2,836,343	+		PFLU_RS12560	0.49	+0.4
2,836,343	+		PFLU_RS12560	0.49	-0.7
2,836,343	+		PFLU_RS12560	0.49	-0.3
2,836,343	+		PFLU_RS12560	0.49	-0.5
2,836,343	+		PFLU_RS12560	0.49	-0.7
2,836,344	-		PFLU_RS12560	0.49	+1.2
2,836,344	-		PFLU_RS12560	0.49	-0.6
2,836,344	-		PFLU_RS12560	0.49	+0.4
2,836,347	+		PFLU_RS12560	0.50	-0.1
2,836,347	+		PFLU_RS12560	0.50	-1.1
2,836,347	+		PFLU_RS12560	0.50	-0.9
2,836,347	+		PFLU_RS12560	0.50	+0.5
2,836,347	+		PFLU_RS12560	0.50	-0.1
2,836,347	+		PFLU_RS12560	0.50	+0.4
2,836,348	-		PFLU_RS12560	0.50	-0.7
2,836,348	-		PFLU_RS12560	0.50	+0.7
2,836,348	-		PFLU_RS12560	0.50	+0.5
2,836,348	-		PFLU_RS12560	0.50	-1.1
2,836,348	-		PFLU_RS12560	0.50	+0.3
2,836,348	-		PFLU_RS12560	0.50	+0.1
2,836,348	-		PFLU_RS12560	0.50	-0.7
2,836,348	-		PFLU_RS12560	0.50	-2.5
2,836,353	+		PFLU_RS12560	0.51	-0.7
2,836,353	+		PFLU_RS12560	0.51	-1.4
2,836,353	+		PFLU_RS12560	0.51	-0.1
2,836,353	+		PFLU_RS12560	0.51	+0.5
2,836,353	+		PFLU_RS12560	0.51	-0.0
2,836,353	+		PFLU_RS12560	0.51	+0.5
2,836,353	+		PFLU_RS12560	0.51	+0.9
2,836,353	+		PFLU_RS12560	0.51	-2.3
2,836,353	+		PFLU_RS12560	0.51	-0.3
2,836,353	+		PFLU_RS12560	0.51	-0.5
2,836,353	+		PFLU_RS12560	0.51	-0.3
2,836,353	+		PFLU_RS12560	0.51	-0.5
2,836,354	-		PFLU_RS12560	0.51	-1.1
2,836,354	-		PFLU_RS12560	0.51	+0.9
2,836,354	-		PFLU_RS12560	0.51	+1.1
2,836,354	-		PFLU_RS12560	0.51	-0.9
2,836,354	-		PFLU_RS12560	0.51	-1.5
2,836,354	-		PFLU_RS12560	0.51	+0.5
2,836,354	-		PFLU_RS12560	0.51	-1.7
2,836,354	-		PFLU_RS12560	0.51	+0.9
2,836,354	-		PFLU_RS12560	0.51	+0.6
2,836,354	-		PFLU_RS12560	0.51	+0.5
2,836,354	-		PFLU_RS12560	0.51	+2.1
2,836,354	-		PFLU_RS12560	0.51	-1.9
2,836,354	-		PFLU_RS12560	0.51	+0.1
2,836,389	+		PFLU_RS12560	0.60	-0.1
2,836,390	-		PFLU_RS12560	0.60	-1.7
2,836,390	-		PFLU_RS12560	0.60	-1.6
2,836,476	-		PFLU_RS12560	0.81	+0.8
2,836,512	+		PFLU_RS12560	0.89	-0.5
2,836,512	+		PFLU_RS12560	0.89	+0.5
2,836,513	-		PFLU_RS12560	0.89	-0.1
2,836,579	+				+0.4
2,836,579	+				+1.3
2,836,580	-				-1.1
2,836,580	-				-0.5
2,836,836	+		PFLU_RS12565	0.14	+0.9
2,836,836	+		PFLU_RS12565	0.14	+0.9
2,836,837	-		PFLU_RS12565	0.14	+0.4
2,836,837	-		PFLU_RS12565	0.14	-0.1
2,836,837	-		PFLU_RS12565	0.14	-0.5
2,836,837	-		PFLU_RS12565	0.14	+0.1
2,836,838	+		PFLU_RS12565	0.15	-0.9
2,836,839	-		PFLU_RS12565	0.15	+0.9
2,836,871	+		PFLU_RS12565	0.17	+0.6
2,836,872	-		PFLU_RS12565	0.17	-0.1
2,836,872	-		PFLU_RS12565	0.17	-1.1
2,837,053	+		PFLU_RS12565	0.30	+0.6
2,837,054	-		PFLU_RS12565	0.30	+0.5
2,837,054	-		PFLU_RS12565	0.30	-1.4
2,837,054	-		PFLU_RS12565	0.30	+0.4
2,837,054	-		PFLU_RS12565	0.30	+0.7
2,837,054	-		PFLU_RS12565	0.30	+1.1
2,837,054	-		PFLU_RS12565	0.30	+0.3
2,837,054	-		PFLU_RS12565	0.30	-1.3