Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09500

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
2,100,418	+		PFLU_RS09490	0.74	-1.5
2,100,418	+		PFLU_RS09490	0.74	+0.7
2,100,419	-		PFLU_RS09490	0.74	-0.8
2,100,612	+				+0.5
2,100,613	-				+1.1
2,100,628	-				-0.9
2,100,684	-				-0.6
2,100,684	-				+1.2
2,100,745	+				+0.9
2,100,745	+				-0.5
2,100,745	+				+0.6
2,100,769	+				-0.9
2,100,772	+				+1.0
2,100,772	+				-0.1
2,100,816	+		PFLU_RS09495	0.18	-0.4
2,100,816	+		PFLU_RS09495	0.18	-1.5
2,100,907	+		PFLU_RS09495	0.53	-0.7
2,100,907	+		PFLU_RS09495	0.53	-1.0
2,100,907	+		PFLU_RS09495	0.53	+2.1
2,100,908	-		PFLU_RS09495	0.54	-1.9
2,100,908	-		PFLU_RS09495	0.54	+1.7
2,101,012	+				+0.1
2,101,012	+				+0.7
2,101,013	-				-0.7
2,101,013	-				-1.5
2,101,013	-				-0.1
2,101,013	-				+0.1
2,101,013	-				-0.5
2,101,013	-				+0.9
2,101,089	+				-1.1
2,101,089	+				-0.0
2,101,089	+				+2.4
2,101,090	-				-1.9
2,101,090	-				-0.2
2,101,166	+				-1.6
2,101,167	-				+0.1
2,101,172	+				+0.2
2,101,172	+				-0.0
2,101,172	+				-0.0
2,101,173	-				-0.5
2,101,173	-				-1.3
2,101,173	-				+0.5
2,101,173	-				+0.8
2,101,185	+				-0.5
2,101,194	+				+0.7
2,101,195	-				-0.9
2,101,195	-				+2.0
2,101,195	-				-0.8
2,101,195	-				-0.4
2,101,208	-				-0.2
2,101,317	+		PFLU_RS09500	0.45	+0.9
2,101,317	+		PFLU_RS09500	0.45	+1.1
2,101,481	+				+0.3
2,101,482	-				+0.5
2,101,494	+				+1.7
2,101,494	+				-0.9
2,101,494	+				+0.2
2,101,494	+				+0.4
2,101,495	-				-0.1
2,101,495	-				+0.2
2,101,495	-				+0.8
2,101,554	-				+0.1
2,101,576	+				+2.1
2,101,576	+				+0.2
2,101,584	-				-1.2
2,101,601	-				-1.9
2,101,601	-				-1.3
2,101,604	+				-1.3
2,101,604	+				+1.7
2,101,640	+		PFLU_RS09505	0.15	+0.3
2,101,641	-		PFLU_RS09505	0.15	+0.9
2,101,727	+		PFLU_RS09505	0.46	+0.4
2,101,782	-		PFLU_RS09505	0.66	+0.6
2,101,782	-		PFLU_RS09505	0.66	+0.0
2,101,782	-		PFLU_RS09505	0.66	-1.2
2,101,782	-		PFLU_RS09505	0.66	-0.3
2,101,870	+				+0.3
2,101,878	+				-0.5
2,101,878	+				+0.5
2,101,878	+				-1.5
2,101,878	+				-0.8
2,101,878	+				+1.6
2,101,878	+				-0.6
2,101,878	+				-0.7
2,101,878	+				+0.6
2,101,878	+				-0.4
2,101,878	+				+1.2
2,101,878	+				+1.0
2,101,878	+				-0.8
2,101,878	+				+0.3
2,101,878	+				+0.6
2,101,878	+				-0.9
2,101,878	+				-0.8
2,101,879	-				+0.6
2,101,879	-				-0.2
2,101,879	-				-1.0
2,101,879	-				-0.2
2,101,879	-				+0.7
2,101,879	-				-0.9
2,101,879	-				-0.5
2,101,879	-				+0.2
2,101,879	-				-0.2
2,101,879	-				-0.3
2,101,879	-				-0.5
2,101,879	-				+0.1
2,101,879	-				-0.8
2,101,879	-				-0.1
2,101,879	-				+1.1
2,101,879	-				-0.3
2,101,879	-				+0.3
2,101,912	-				+0.1
2,101,912	-				-1.6
2,101,912	-				-0.3
2,101,912	-				-1.5
2,101,916	+				+0.6
2,101,916	+				-0.6
2,101,916	+				+1.1
2,101,917	-				+0.3
2,101,917	-				+0.8
2,101,917	-				+0.5
2,101,924	+				+0.5
2,101,924	+				-0.1
2,101,924	+				-1.7
2,101,924	+				-0.2
2,101,925	-				+0.3
2,101,925	-				-0.5
2,101,925	-				+0.5
2,101,925	-				-0.3
2,101,925	-				+0.3
2,101,925	-				-1.6
2,101,935	+				+0.3
2,101,935	+				+1.1
2,101,935	+				-1.2
2,101,936	-				-2.2
2,101,936	-				-2.3
2,101,936	-				-2.1
2,101,936	-				-0.5
2,101,939	+				+0.4
2,101,940	-				-0.5
2,101,940	-				+0.7
2,101,940	-				-0.1
2,101,966	+				-1.0
2,101,966	+				+0.1
2,101,966	+				-1.7
2,101,966	+				+0.9
2,101,967	-				-0.3
2,101,967	-				-1.0
2,101,967	-				-0.1
2,101,967	-				+0.1
2,101,967	-				+0.7
2,101,972	+				+0.4
2,101,972	+				+1.0
2,101,973	-				-0.2
2,101,973	-				-0.5
2,101,973	-				-0.1
2,101,979	-				-0.3
2,102,001	+				-0.1
2,102,001	+				-0.8
2,102,001	+				+0.0
2,102,001	+				-0.1
2,102,001	+				-0.1
2,102,001	+				-0.3
2,102,001	+				+0.3
2,102,001	+				-0.3
2,102,001	+				+0.3
2,102,001	+				-1.0
2,102,002	-				-0.8
2,102,002	-				+0.4
2,102,002	-				+0.3
2,102,002	-				+1.7
2,102,002	-				-0.3
2,102,002	-				+0.5
2,102,002	-				+0.3
2,102,002	-				-1.7
2,102,002	-				+0.5
2,102,002	-				-0.5
2,102,002	-				+1.6
2,102,002	-				-0.6
2,102,002	-				-0.3
2,102,002	-				+0.3
2,102,039	+				-1.5
2,102,136	+				+3.1
2,102,137	-				+0.3
2,102,137	-				+0.5
2,102,202	+				-0.3
2,102,202	+				-1.2
2,102,202	+				-0.3
2,102,203	-				-1.2
2,102,203	-				-2.2
2,102,203	-				+0.6
2,102,203	-				+1.4
2,102,206	+				-0.2
2,102,206	+				+0.9
2,102,207	-				-0.2
2,102,461	+		PFLU_RS09510	0.17	-0.7
2,102,461	+		PFLU_RS09510	0.17	+0.3
2,102,462	-		PFLU_RS09510	0.17	-0.5