Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08760

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,944,940	+		PFLU_RS08750	0.69	+0.7
1,944,940	+		PFLU_RS08750	0.69	+0.8
1,944,979	+		PFLU_RS08750	0.74	-1.7
1,944,979	+		PFLU_RS08750	0.74	-0.6
1,944,979	+		PFLU_RS08750	0.74	-0.2
1,944,979	+		PFLU_RS08750	0.74	+0.2
1,944,980	-		PFLU_RS08750	0.74	-1.0
1,944,980	-		PFLU_RS08750	0.74	+0.9
1,944,988	+		PFLU_RS08750	0.75	-0.4
1,945,091	+		PFLU_RS08750	0.89	+0.1
1,945,091	+		PFLU_RS08750	0.89	-0.5
1,945,092	-		PFLU_RS08750	0.89	+0.2
1,945,228	-				-1.6
1,945,228	-				+0.8
1,945,246	+				+0.9
1,945,247	-				-0.3
1,945,288	+				-2.0
1,945,288	+				+0.9
1,945,288	+				-0.0
1,945,289	-				+0.5
1,945,289	-				+0.5
1,945,289	-				+0.3
1,945,289	-				-0.2
1,945,401	-		PFLU_RS08755	0.23	+0.9
1,945,401	-		PFLU_RS08755	0.23	-0.9
1,945,447	+		PFLU_RS08755	0.30	+0.6
1,945,448	-		PFLU_RS08755	0.30	-1.1
1,945,471	+		PFLU_RS08755	0.34	-0.8
1,945,471	+		PFLU_RS08755	0.34	-1.2
1,945,471	+		PFLU_RS08755	0.34	-0.4
1,945,471	+		PFLU_RS08755	0.34	-1.1
1,945,472	-		PFLU_RS08755	0.34	+0.1
1,945,472	-		PFLU_RS08755	0.34	-0.4
1,945,472	-		PFLU_RS08755	0.34	-0.3
1,945,537	+		PFLU_RS08755	0.43	+0.5
1,945,565	+		PFLU_RS08755	0.47	-0.2
1,945,565	+		PFLU_RS08755	0.47	-2.6
1,945,565	+		PFLU_RS08755	0.47	-1.8
1,945,565	+		PFLU_RS08755	0.47	-0.1
1,945,565	+		PFLU_RS08755	0.47	-1.1
1,945,565	+		PFLU_RS08755	0.47	-1.4
1,945,565	+		PFLU_RS08755	0.47	+1.0
1,945,565	+		PFLU_RS08755	0.47	-0.4
1,945,565	+		PFLU_RS08755	0.47	+0.3
1,945,566	-		PFLU_RS08755	0.48	+0.6
1,945,566	-		PFLU_RS08755	0.48	-0.5
1,945,566	-		PFLU_RS08755	0.48	-0.5
1,945,566	-		PFLU_RS08755	0.48	-1.6
1,945,566	-		PFLU_RS08755	0.48	+1.3
1,945,566	-		PFLU_RS08755	0.48	-0.6
1,945,684	+		PFLU_RS08755	0.65	+0.8
1,945,684	+		PFLU_RS08755	0.65	+2.8
1,945,684	+		PFLU_RS08755	0.65	+0.1
1,945,709	-		PFLU_RS08755	0.69	+0.4
1,945,709	-		PFLU_RS08755	0.69	+0.9
1,945,709	-		PFLU_RS08755	0.69	-3.1
1,945,826	+		PFLU_RS08755	0.86	+0.8
1,945,826	+		PFLU_RS08755	0.86	+0.1
1,945,826	+		PFLU_RS08755	0.86	-1.0
1,945,827	-		PFLU_RS08755	0.86	+2.2
1,945,903	+				-1.0
1,945,904	-				+1.2
1,946,028	+		PFLU_RS08760	0.22	+0.4
1,946,029	-		PFLU_RS08760	0.22	-0.1
1,946,169	+		PFLU_RS08760	0.54	+0.3
1,946,169	+		PFLU_RS08760	0.54	-0.2
1,946,169	+		PFLU_RS08760	0.54	+0.2
1,946,169	+		PFLU_RS08760	0.54	+1.2
1,946,170	-		PFLU_RS08760	0.54	+1.5
1,946,170	-		PFLU_RS08760	0.54	+2.0
1,946,353	+				+0.4
1,946,519	+		PFLU_RS08765	0.25	-0.1
1,946,519	+		PFLU_RS08765	0.25	+0.2
1,946,519	+		PFLU_RS08765	0.25	-1.4
1,946,519	+		PFLU_RS08765	0.25	+0.6
1,946,519	+		PFLU_RS08765	0.25	-0.9
1,946,519	+		PFLU_RS08765	0.25	-0.6
1,946,520	-		PFLU_RS08765	0.26	+1.0
1,946,520	-		PFLU_RS08765	0.26	-0.1
1,946,520	-		PFLU_RS08765	0.26	+0.5
1,946,520	-		PFLU_RS08765	0.26	-1.5
1,946,520	-		PFLU_RS08765	0.26	+0.6
1,946,962	+				-0.7
1,946,962	+				+0.1
1,946,962	+				-0.4
1,946,962	+				+0.0
1,946,962	+				-1.4
1,946,962	+				-1.8
1,946,962	+				-0.4
1,946,962	+				+0.4
1,946,962	+				-0.1
1,946,962	+				+0.0
1,946,962	+				+0.4
1,946,962	+				-0.4
1,946,962	+				+0.6
1,946,962	+				-0.4
1,946,962	+				+0.6
1,946,962	+				+1.1
1,946,962	+				-0.1
1,946,962	+				-0.1
1,946,962	+				-0.9
1,946,962	+				-0.1
1,946,962	+				-0.3
1,946,962	+				+0.2
1,946,962	+				-0.5
1,946,962	+				+0.5
1,946,962	+				+0.6
1,946,963	-				+1.3
1,946,963	-				-1.8
1,946,963	-				+0.6
1,946,963	-				+0.8
1,946,963	-				+0.5
1,946,963	-				+0.6
1,946,963	-				+0.8
1,946,963	-				+0.5
1,946,963	-				+0.3
1,946,963	-				-2.4
1,946,963	-				-0.4
1,946,963	-				-0.0
1,946,963	-				+1.0
1,946,963	-				-0.2
1,946,963	-				-0.8
1,946,963	-				-1.6
1,946,966	+				+0.7
1,946,966	+				+0.3
1,947,328	+		PFLU_RS08770	0.34	-0.8
1,947,328	+		PFLU_RS08770	0.34	-0.6
1,947,328	+		PFLU_RS08770	0.34	-0.2
1,947,328	+		PFLU_RS08770	0.34	-1.0
1,947,329	-		PFLU_RS08770	0.34	+0.1
1,947,329	-		PFLU_RS08770	0.34	+0.2