Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08485

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,889,508	+				+0.2
1,889,508	+				-0.4
1,889,509	-				-0.3
1,889,509	-				+0.6
1,889,509	-				-0.5
1,889,518	+				+1.5
1,889,518	+				+0.1
1,889,518	+				-0.4
1,889,518	+				-0.2
1,889,518	+				-0.8
1,889,518	+				-0.3
1,889,518	+				+0.4
1,889,519	-				+2.1
1,889,519	-				-0.5
1,889,519	-				-0.4
1,889,519	-				-0.0
1,889,519	-				+0.4
1,889,519	-				-0.8
1,889,569	+				+0.2
1,889,569	+				-1.2
1,889,569	+				+0.2
1,889,570	-				+0.4
1,889,587	+				+0.1
1,889,587	+				-2.2
1,889,588	-				+1.9
1,889,588	-				-0.6
1,889,588	-				-0.5
1,889,588	-				+0.7
1,889,588	-				-0.1
1,889,674	-		PFLU_RS08480	0.11	+0.2
1,889,745	+		PFLU_RS08480	0.20	+0.5
1,889,745	+		PFLU_RS08480	0.20	-1.4
1,889,745	+		PFLU_RS08480	0.20	+1.1
1,889,746	-		PFLU_RS08480	0.20	+0.6
1,889,746	-		PFLU_RS08480	0.20	-2.3
1,889,746	-		PFLU_RS08480	0.20	-0.9
1,889,751	+		PFLU_RS08480	0.21	+0.1
1,889,751	+		PFLU_RS08480	0.21	+2.3
1,889,751	+		PFLU_RS08480	0.21	+0.7
1,889,751	+		PFLU_RS08480	0.21	+0.4
1,889,752	-		PFLU_RS08480	0.21	-0.2
1,889,919	+		PFLU_RS08480	0.43	-1.5
1,889,920	-		PFLU_RS08480	0.43	+0.8
1,889,949	+		PFLU_RS08480	0.47	+0.5
1,889,949	+		PFLU_RS08480	0.47	+0.6
1,889,949	+		PFLU_RS08480	0.47	+0.9
1,889,949	+		PFLU_RS08480	0.47	-0.2
1,889,949	+		PFLU_RS08480	0.47	+0.3
1,889,949	+		PFLU_RS08480	0.47	+0.1
1,889,949	+		PFLU_RS08480	0.47	-0.0
1,889,949	+		PFLU_RS08480	0.47	-1.0
1,889,950	-		PFLU_RS08480	0.47	+0.9
1,889,950	-		PFLU_RS08480	0.47	+1.1
1,889,977	+		PFLU_RS08480	0.51	-0.3
1,890,021	+		PFLU_RS08480	0.57	+0.4
1,890,021	+		PFLU_RS08480	0.57	+1.2
1,890,021	+		PFLU_RS08480	0.57	+1.3
1,890,021	+		PFLU_RS08480	0.57	+0.3
1,890,021	+		PFLU_RS08480	0.57	-0.5
1,890,021	+		PFLU_RS08480	0.57	-2.4
1,890,022	-		PFLU_RS08480	0.57	-1.8
1,890,022	-		PFLU_RS08480	0.57	-1.2
1,890,022	-		PFLU_RS08480	0.57	-1.0
1,890,022	-		PFLU_RS08480	0.57	+0.8
1,890,022	-		PFLU_RS08480	0.57	+1.0
1,890,022	-		PFLU_RS08480	0.57	+0.4
1,890,023	+		PFLU_RS08480	0.57	-0.4
1,890,023	+		PFLU_RS08480	0.57	-0.5
1,890,023	+		PFLU_RS08480	0.57	-1.6
1,890,023	+		PFLU_RS08480	0.57	-0.3
1,890,023	+		PFLU_RS08480	0.57	+1.8
1,890,024	-		PFLU_RS08480	0.57	-0.1
1,890,024	-		PFLU_RS08480	0.57	+0.5
1,890,171	+		PFLU_RS08480	0.77	+1.2
1,890,171	+		PFLU_RS08480	0.77	+1.2
1,890,171	+		PFLU_RS08480	0.77	+0.6
1,890,172	-		PFLU_RS08480	0.77	+0.4
1,890,172	-		PFLU_RS08480	0.77	+0.4
1,890,172	-		PFLU_RS08480	0.77	-2.3
1,890,172	-		PFLU_RS08480	0.77	-0.2
1,890,172	-		PFLU_RS08480	0.77	+0.7
1,890,172	-		PFLU_RS08480	0.77	-1.1
1,890,172	-		PFLU_RS08480	0.77	-0.4
1,890,183	+		PFLU_RS08480	0.78	+0.1
1,890,184	-		PFLU_RS08480	0.78	+0.2
1,890,184	-		PFLU_RS08480	0.78	+0.4
1,890,304	-				-0.4
1,890,345	+				-1.5
1,890,345	+				+0.3
1,890,345	+				-0.2
1,890,345	+				-0.3
1,890,345	+				+0.0
1,890,345	+				+0.8
1,890,345	+				-0.1
1,890,345	+				-0.7
1,890,345	+				+0.2
1,890,345	+				+0.8
1,890,345	+				+2.0
1,890,345	+				-2.4
1,890,345	+				+0.8
1,890,345	+				+0.1
1,890,345	+				+1.2
1,890,345	+				-1.1
1,890,345	+				-0.8
1,890,345	+				-0.4
1,890,345	+				+1.2
1,890,345	+				-0.1
1,890,345	+				+1.2
1,890,345	+				+0.4
1,890,345	+				-0.4
1,890,345	+				-0.1
1,890,345	+				-0.7
1,890,346	-				-1.5
1,890,346	-				+1.0
1,890,346	-				+2.8
1,890,346	-				+1.3
1,890,346	-				+0.5
1,890,346	-				-0.1
1,890,346	-				-0.2
1,890,346	-				-1.0
1,890,346	-				+0.9
1,890,346	-				+0.2
1,890,346	-				+1.2
1,890,346	-				-0.6
1,890,346	-				-0.5
1,890,346	-				-0.4
1,890,346	-				+0.1
1,890,346	-				-1.4
1,890,346	-				+0.2
1,890,346	-				+1.6
1,890,346	-				+2.8
1,890,346	-				-0.0
1,890,346	-				-0.1
1,890,346	-				-2.1
1,890,346	-				-0.8
1,890,346	-				-0.1
1,890,346	-				-0.4
1,890,346	-				-0.6
1,890,532	-		PFLU_RS08485	0.10	+0.6
1,890,532	-		PFLU_RS08485	0.10	-0.2
1,890,915	-		PFLU_RS08485	0.59	+2.0
1,891,115	+		PFLU_RS08485	0.84	+0.5
1,891,309	+				+1.0
1,891,309	+				+1.2
1,891,316	+				+0.2
1,891,346	+				-1.1
1,891,346	+				+0.7
1,891,346	+				+1.1
1,891,347	-				+1.5
1,891,392	+				+0.4
1,891,393	-				-0.5
1,891,393	-				+0.0
1,891,393	-				-0.1
1,891,393	-				+1.4
1,891,393	-				+0.6
1,891,431	+				+0.5
1,891,431	+				-0.6
1,891,442	+				-1.3
1,891,442	+				-0.8
1,891,474	+				-1.5
1,891,653	+				+0.2
1,891,653	+				+0.6
1,891,653	+				-0.8
1,891,653	+				-1.8
1,891,653	+				-1.1
1,891,653	+				+1.8