Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06890

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,541,013	+		PFLU_RS06885	0.39	+0.6
1,541,013	+		PFLU_RS06885	0.39	-0.2
1,541,014	-		PFLU_RS06885	0.39	-0.6
1,541,049	+		PFLU_RS06885	0.42	-2.1
1,541,071	-		PFLU_RS06885	0.43	-1.2
1,541,091	+		PFLU_RS06885	0.45	+0.3
1,541,091	+		PFLU_RS06885	0.45	-0.0
1,541,091	+		PFLU_RS06885	0.45	-0.2
1,541,091	+		PFLU_RS06885	0.45	-0.3
1,541,092	-		PFLU_RS06885	0.45	-0.5
1,541,092	-		PFLU_RS06885	0.45	-1.2
1,541,127	+		PFLU_RS06885	0.47	+0.7
1,541,127	+		PFLU_RS06885	0.47	-0.0
1,541,127	+		PFLU_RS06885	0.47	+1.1
1,541,127	+		PFLU_RS06885	0.47	-0.0
1,541,127	+		PFLU_RS06885	0.47	-0.6
1,541,128	-		PFLU_RS06885	0.47	+0.7
1,541,128	-		PFLU_RS06885	0.47	-0.0
1,541,128	-		PFLU_RS06885	0.47	+1.0
1,541,128	-		PFLU_RS06885	0.47	+1.7
1,541,128	-		PFLU_RS06885	0.47	-0.6
1,541,148	-		PFLU_RS06885	0.49	-0.0
1,541,181	+		PFLU_RS06885	0.51	+0.4
1,541,182	-		PFLU_RS06885	0.51	+0.4
1,541,217	+		PFLU_RS06885	0.54	-0.5
1,541,223	+		PFLU_RS06885	0.54	-1.7
1,541,293	+		PFLU_RS06885	0.59	-0.3
1,541,341	+		PFLU_RS06885	0.62	+1.5
1,541,342	-		PFLU_RS06885	0.63	-1.9
1,541,365	-		PFLU_RS06885	0.64	+1.8
1,541,551	+		PFLU_RS06885	0.78	+0.6
1,541,551	+		PFLU_RS06885	0.78	-0.3
1,541,572	+		PFLU_RS06885	0.79	+0.1
1,541,591	+		PFLU_RS06885	0.80	+0.3
1,541,626	+		PFLU_RS06885	0.83	-1.3
1,541,628	+		PFLU_RS06885	0.83	-0.3
1,541,628	+		PFLU_RS06885	0.83	+0.1
1,541,629	-		PFLU_RS06885	0.83	+0.0
1,541,692	+		PFLU_RS06885	0.88	+0.8
1,541,693	-		PFLU_RS06885	0.88	-0.0
1,541,693	-		PFLU_RS06885	0.88	+0.6
1,541,693	-		PFLU_RS06885	0.88	+2.3
1,541,700	-		PFLU_RS06885	0.88	+0.5
1,541,719	+		PFLU_RS06885	0.90	+0.6
1,541,720	-		PFLU_RS06885	0.90	+0.3
1,541,782	-				+1.7
1,541,782	-				-0.8
1,541,782	-				+1.3
1,541,810	-				+0.3
1,541,810	-				-1.7
1,541,860	+				+1.2
1,541,861	-				-0.2
1,541,983	+				-1.3
1,541,983	+				-0.2
1,541,984	-				+1.3
1,542,001	+				-2.0
1,542,001	+				+0.2
1,542,063	+		PFLU_RS06890	0.13	+0.5
1,542,063	+		PFLU_RS06890	0.13	+1.3
1,542,063	+		PFLU_RS06890	0.13	+1.7
1,542,063	+		PFLU_RS06890	0.13	+1.3
1,542,064	-		PFLU_RS06890	0.13	-1.5
1,542,334	+		PFLU_RS06890	0.59	-0.7
1,542,334	+		PFLU_RS06890	0.59	-0.6
1,542,334	+		PFLU_RS06890	0.59	-0.8
1,542,335	-		PFLU_RS06890	0.59	+0.0
1,542,371	+		PFLU_RS06890	0.65	-0.9
1,542,384	+		PFLU_RS06890	0.68	-0.1
1,542,384	+		PFLU_RS06890	0.68	-1.2
1,542,385	-		PFLU_RS06890	0.68	+0.5
1,542,385	-		PFLU_RS06890	0.68	+0.2
1,542,385	-		PFLU_RS06890	0.68	-0.5
1,542,385	-		PFLU_RS06890	0.68	-1.0
1,542,518	+				+0.9
1,542,518	+				+1.1
1,542,519	-				+0.1
1,542,519	-				-0.8
1,542,519	-				+3.3
1,542,519	-				-0.2
1,542,519	-				-0.1
1,542,703	+		PFLU_RS06895	0.11	-0.1
1,542,703	+		PFLU_RS06895	0.11	+0.7
1,542,703	+		PFLU_RS06895	0.11	+0.3
1,542,703	+		PFLU_RS06895	0.11	-0.0
1,542,703	+		PFLU_RS06895	0.11	-0.7
1,542,703	+		PFLU_RS06895	0.11	-1.0
1,542,703	+		PFLU_RS06895	0.11	-1.3
1,542,703	+		PFLU_RS06895	0.11	-0.1
1,542,703	+		PFLU_RS06895	0.11	+1.0
1,542,703	+		PFLU_RS06895	0.11	+0.9
1,542,703	+		PFLU_RS06895	0.11	-0.5
1,542,704	-		PFLU_RS06895	0.11	-0.0
1,542,704	-		PFLU_RS06895	0.11	+0.7
1,542,704	-		PFLU_RS06895	0.11	-1.0
1,542,704	-		PFLU_RS06895	0.11	-1.2
1,542,704	-		PFLU_RS06895	0.11	-0.7
1,542,704	-		PFLU_RS06895	0.11	+0.3
1,542,800	-		PFLU_RS06895	0.19	-0.3
1,542,868	+		PFLU_RS06895	0.25	-0.1
1,542,868	+		PFLU_RS06895	0.25	+0.0
1,542,868	+		PFLU_RS06895	0.25	-0.7
1,542,869	-		PFLU_RS06895	0.25	-0.3
1,542,869	-		PFLU_RS06895	0.25	-0.4
1,542,869	-		PFLU_RS06895	0.25	-0.2
1,542,869	-		PFLU_RS06895	0.25	+0.8
1,542,869	-		PFLU_RS06895	0.25	+0.6
1,543,151	+		PFLU_RS06895	0.50	-0.6
1,543,186	+		PFLU_RS06895	0.53	+0.7
1,543,257	+		PFLU_RS06895	0.59	-0.1
1,543,257	+		PFLU_RS06895	0.59	-0.7
1,543,257	+		PFLU_RS06895	0.59	+0.2
1,543,258	-		PFLU_RS06895	0.59	-0.9
1,543,258	-		PFLU_RS06895	0.59	+1.5
1,543,258	-		PFLU_RS06895	0.59	+0.4
1,543,258	-		PFLU_RS06895	0.59	+0.5
1,543,258	-		PFLU_RS06895	0.59	-0.4
1,543,258	-		PFLU_RS06895	0.59	-0.0
1,543,258	-		PFLU_RS06895	0.59	+0.4
1,543,258	-		PFLU_RS06895	0.59	-2.4
1,543,277	-		PFLU_RS06895	0.60	+0.3
1,543,402	+		PFLU_RS06895	0.71	+0.9
1,543,402	+		PFLU_RS06895	0.71	+0.6
1,543,403	-		PFLU_RS06895	0.71	-0.9
1,543,444	+		PFLU_RS06895	0.75	-0.1
1,543,444	+		PFLU_RS06895	0.75	-0.7
1,543,445	-		PFLU_RS06895	0.75	-0.1