Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05965

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,333,173	+		PFLU_RS05960	0.49	-0.1
1,333,173	+		PFLU_RS05960	0.49	-0.5
1,333,173	+		PFLU_RS05960	0.49	-1.0
1,333,173	+		PFLU_RS05960	0.49	-0.3
1,333,174	-		PFLU_RS05960	0.49	-0.0
1,333,174	-		PFLU_RS05960	0.49	-2.8
1,333,224	+		PFLU_RS05960	0.54	-1.0
1,333,225	-		PFLU_RS05960	0.54	-1.3
1,333,680	+				+0.9
1,333,680	+				+0.3
1,333,681	-				-0.3
1,333,681	-				-0.3
1,333,792	+				+2.5
1,333,793	-				-0.5
1,333,822	-				-0.4
1,333,845	+				-0.3
1,333,845	+				-0.2
1,333,846	-				-0.7
1,333,846	-				+0.0
1,333,883	-				+0.3
1,333,883	-				+2.0
1,333,883	-				+0.5
1,333,883	-				+0.3
1,333,883	-				+0.2
1,333,888	+				-0.0
1,333,894	-				+0.0
1,334,020	+				-1.8
1,334,020	+				+0.2
1,334,020	+				+0.7
1,334,020	+				+1.8
1,334,020	+				-0.9
1,334,021	-				-0.5
1,334,021	-				-2.5
1,334,021	-				-1.0
1,334,028	-		PFLU_RS05965	0.11	+0.7
1,334,155	+		PFLU_RS05965	0.79	+0.7
1,334,254	+				+0.1
1,334,254	+				+0.7
1,334,254	+				+0.2
1,334,254	+				-0.3
1,334,254	+				-0.3
1,334,254	+				-0.4
1,334,254	+				+0.3
1,334,254	+				+0.2
1,334,254	+				+0.4
1,334,255	-				+1.2
1,334,255	-				+1.1
1,334,255	-				+0.6
1,334,255	-				+0.6
1,334,258	+				+0.2
1,334,258	+				-1.5
1,334,259	-				+0.8
1,334,259	-				-0.7
1,334,259	-				+0.5
1,334,259	-				-0.3
1,334,259	-				-0.2
1,334,284	+				-1.3
1,334,284	+				-0.4
1,334,284	+				+1.0
1,334,284	+				-0.8
1,334,285	-				+0.0
1,334,285	-				+0.9
1,334,285	-				+1.1
1,334,285	-				+0.9
1,334,290	+				+0.9
1,334,330	+				+0.2
1,334,549	-		PFLU_RS05970	0.19	+0.6
1,334,650	+		PFLU_RS05970	0.25	-0.7
1,334,650	+		PFLU_RS05970	0.25	+0.5
1,334,650	+		PFLU_RS05970	0.25	+0.9
1,334,651	-		PFLU_RS05970	0.25	-1.2
1,334,651	-		PFLU_RS05970	0.25	+0.7
1,334,651	-		PFLU_RS05970	0.25	-0.8
1,334,659	+		PFLU_RS05970	0.25	+0.1
1,334,660	-		PFLU_RS05970	0.25	+1.6
1,334,665	+		PFLU_RS05970	0.26	+0.6
1,334,665	+		PFLU_RS05970	0.26	+1.0
1,334,665	+		PFLU_RS05970	0.26	-0.1
1,334,665	+		PFLU_RS05970	0.26	+0.4
1,334,665	+		PFLU_RS05970	0.26	-1.1
1,334,665	+		PFLU_RS05970	0.26	-2.0
1,334,665	+		PFLU_RS05970	0.26	-0.3
1,334,665	+		PFLU_RS05970	0.26	-0.1
1,334,665	+		PFLU_RS05970	0.26	+0.3
1,334,665	+		PFLU_RS05970	0.26	+0.1
1,334,666	-		PFLU_RS05970	0.26	-0.4
1,334,666	-		PFLU_RS05970	0.26	+0.2
1,334,666	-		PFLU_RS05970	0.26	-0.6
1,334,666	-		PFLU_RS05970	0.26	+0.2
1,334,666	-		PFLU_RS05970	0.26	+0.3
1,334,666	-		PFLU_RS05970	0.26	-0.8
1,334,666	-		PFLU_RS05970	0.26	+0.1
1,334,745	-		PFLU_RS05970	0.31	+0.7
1,334,821	+		PFLU_RS05970	0.35	-0.6
1,334,822	-		PFLU_RS05970	0.35	-1.5
1,334,842	+		PFLU_RS05970	0.37	+0.2
1,334,843	-		PFLU_RS05970	0.37	+0.6
1,334,843	-		PFLU_RS05970	0.37	-0.0
1,334,843	-		PFLU_RS05970	0.37	+0.3
1,334,895	-		PFLU_RS05970	0.40	-0.4
1,335,050	+		PFLU_RS05970	0.49	-0.7
1,335,050	+		PFLU_RS05970	0.49	-0.4
1,335,050	+		PFLU_RS05970	0.49	+0.2
1,335,050	+		PFLU_RS05970	0.49	+0.3
1,335,050	+		PFLU_RS05970	0.49	-0.6
1,335,050	+		PFLU_RS05970	0.49	+0.9
1,335,050	+		PFLU_RS05970	0.49	-0.7
1,335,050	+		PFLU_RS05970	0.49	-1.0
1,335,050	+		PFLU_RS05970	0.49	-1.6
1,335,050	+		PFLU_RS05970	0.49	-1.1
1,335,050	+		PFLU_RS05970	0.49	+0.0
1,335,050	+		PFLU_RS05970	0.49	-0.5
1,335,051	-		PFLU_RS05970	0.49	-0.1
1,335,051	-		PFLU_RS05970	0.49	+0.0
1,335,051	-		PFLU_RS05970	0.49	+2.1
1,335,051	-		PFLU_RS05970	0.49	-0.1
1,335,051	-		PFLU_RS05970	0.49	+0.5
1,335,051	-		PFLU_RS05970	0.49	-1.0
1,335,051	-		PFLU_RS05970	0.49	+1.3
1,335,051	-		PFLU_RS05970	0.49	-0.7
1,335,051	-		PFLU_RS05970	0.49	-0.5
1,335,051	-		PFLU_RS05970	0.49	-0.4
1,335,101	+		PFLU_RS05970	0.53	-1.3
1,335,101	+		PFLU_RS05970	0.53	-0.5
1,335,102	-		PFLU_RS05970	0.53	+1.3
1,335,158	-		PFLU_RS05970	0.56	-0.5
1,335,193	+		PFLU_RS05970	0.58	-1.8
1,335,193	+		PFLU_RS05970	0.58	-0.8