Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05585

Experiment: D-Trehalose 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 5 mM (C)
1,258,656	+				+0.8
1,258,656	+				-0.5
1,258,656	+				-1.5
1,258,656	+				-1.3
1,258,656	+				+0.2
1,258,656	+				-0.1
1,258,656	+				-0.2
1,258,656	+				+0.4
1,258,656	+				-1.8
1,258,656	+				-0.1
1,258,657	-				-0.6
1,258,657	-				-0.6
1,258,657	-				-0.5
1,258,657	-				-1.6
1,258,657	-				+0.8
1,258,657	-				+0.7
1,258,658	+				+0.5
1,258,658	+				-0.7
1,258,658	+				-0.2
1,258,658	+				+0.1
1,258,658	+				-0.8
1,258,658	+				-1.5
1,258,658	+				-0.6
1,258,658	+				+0.7
1,258,658	+				-1.6
1,258,658	+				-0.4
1,258,658	+				-0.0
1,258,659	-				-0.2
1,258,659	-				-0.8
1,258,659	-				-1.4
1,258,659	-				+1.4
1,258,659	-				-0.4
1,258,659	-				-0.0
1,258,659	-				+0.4
1,258,735	+		PFLU_RS05580	0.12	+1.8
1,258,736	-		PFLU_RS05580	0.12	+0.2
1,258,841	+		PFLU_RS05580	0.25	-1.0
1,258,841	+		PFLU_RS05580	0.25	-1.4
1,258,842	-		PFLU_RS05580	0.26	+0.5
1,258,842	-		PFLU_RS05580	0.26	+0.6
1,259,042	+		PFLU_RS05580	0.51	+1.4
1,259,042	+		PFLU_RS05580	0.51	+0.5
1,259,043	-		PFLU_RS05580	0.52	+0.7
1,259,043	-		PFLU_RS05580	0.52	-0.2
1,259,043	-		PFLU_RS05580	0.52	-0.3
1,259,070	-		PFLU_RS05580	0.55	+0.1
1,259,070	-		PFLU_RS05580	0.55	+0.3
1,259,077	-		PFLU_RS05580	0.56	+0.2
1,259,077	-		PFLU_RS05580	0.56	-0.4
1,259,077	-		PFLU_RS05580	0.56	+1.8
1,259,153	+		PFLU_RS05580	0.66	+0.5
1,259,153	+		PFLU_RS05580	0.66	+0.4
1,259,153	+		PFLU_RS05580	0.66	+0.7
1,259,153	+		PFLU_RS05580	0.66	+1.1
1,259,153	+		PFLU_RS05580	0.66	+1.2
1,259,153	+		PFLU_RS05580	0.66	-0.2
1,259,153	+		PFLU_RS05580	0.66	+0.5
1,259,154	-		PFLU_RS05580	0.66	+0.9
1,259,154	-		PFLU_RS05580	0.66	+3.2
1,259,154	-		PFLU_RS05580	0.66	-0.1
1,259,154	-		PFLU_RS05580	0.66	-1.1
1,259,160	+		PFLU_RS05580	0.67	+0.1
1,259,161	-		PFLU_RS05580	0.67	+2.2
1,259,162	+		PFLU_RS05580	0.67	+0.2
1,259,162	+		PFLU_RS05580	0.67	-0.4
1,259,162	+		PFLU_RS05580	0.67	+0.6
1,259,162	+		PFLU_RS05580	0.67	-2.0
1,259,162	+		PFLU_RS05580	0.67	-1.0
1,259,163	-		PFLU_RS05580	0.67	-1.4
1,259,163	-		PFLU_RS05580	0.67	+1.9
1,259,163	-		PFLU_RS05580	0.67	+0.9
1,259,221	-		PFLU_RS05580	0.75	-0.0
1,259,221	-		PFLU_RS05580	0.75	-1.2
1,259,256	-		PFLU_RS05580	0.79	+0.0
1,259,306	+		PFLU_RS05580	0.86	-1.4
1,259,306	+		PFLU_RS05580	0.86	+0.9
1,259,306	+		PFLU_RS05580	0.86	-1.2
1,259,307	-		PFLU_RS05580	0.86	+0.8
1,259,307	-		PFLU_RS05580	0.86	+0.4
1,259,307	-		PFLU_RS05580	0.86	-0.9
1,259,380	+				-0.5
1,259,380	+				-0.3
1,259,381	-				+0.1
1,259,381	-				-1.0
1,259,381	-				-0.4
1,259,437	+				-0.6
1,259,437	+				+0.9
1,259,437	+				+0.8
1,259,437	+				+0.1
1,259,437	+				+0.8
1,259,437	+				-1.8
1,259,438	-				-1.0
1,259,438	-				+0.0
1,259,438	-				+0.6
1,259,438	-				-0.4
1,259,438	-				-0.3
1,259,492	+				-0.2
1,259,492	+				+0.9
1,259,492	+				+1.7
1,259,501	-				+0.4
1,259,512	-				+0.4
1,259,518	+				+1.9
1,259,635	+				-1.2
1,259,635	+				+1.4
1,259,635	+				-1.7
1,259,635	+				+0.8
1,259,636	-				-0.6
1,259,636	-				-0.2
1,259,636	-				+1.9
1,259,636	-				-0.4
1,259,636	-				+0.3
1,259,659	-				+0.6
1,259,659	-				+0.1
1,259,659	-				+0.6
1,259,659	-				+1.9
1,259,842	+		PFLU_RS05585	0.28	+1.4
1,259,971	+		PFLU_RS05585	0.46	-1.0
1,259,971	+		PFLU_RS05585	0.46	+1.4
1,259,971	+		PFLU_RS05585	0.46	+1.4
1,259,971	+		PFLU_RS05585	0.46	+1.9
1,259,971	+		PFLU_RS05585	0.46	+2.9
1,259,971	+		PFLU_RS05585	0.46	+0.8
1,259,971	+		PFLU_RS05585	0.46	-0.2
1,259,971	+		PFLU_RS05585	0.46	-1.8
1,259,971	+		PFLU_RS05585	0.46	+0.6
1,259,972	-		PFLU_RS05585	0.47	-1.0
1,259,972	-		PFLU_RS05585	0.47	-2.3
1,259,972	-		PFLU_RS05585	0.47	+2.0
1,259,972	-		PFLU_RS05585	0.47	-0.2
1,259,972	-		PFLU_RS05585	0.47	+1.1
1,259,972	-		PFLU_RS05585	0.47	+1.8
1,259,972	-		PFLU_RS05585	0.47	+1.7
1,259,972	-		PFLU_RS05585	0.47	-0.6
1,259,972	-		PFLU_RS05585	0.47	+0.8
1,259,972	-		PFLU_RS05585	0.47	+0.4
1,259,972	-		PFLU_RS05585	0.47	-2.3
1,259,972	-		PFLU_RS05585	0.47	+1.4
1,260,199	+		PFLU_RS05585	0.79	-1.4
1,260,200	-		PFLU_RS05585	0.79	+2.2
1,260,401	+				+0.8
1,260,401	+				+0.0
1,260,401	+				-1.0
1,260,401	+				+0.4
1,260,402	-				+0.4
1,260,402	-				-1.0
1,260,402	-				-0.2
1,260,402	-				-0.2
1,260,428	+				-1.2
1,260,428	+				+1.4
1,260,428	+				+0.4
1,260,428	+				+1.4
1,260,429	-				-0.2
1,260,429	-				+0.1
1,260,445	+				+1.4
1,260,446	-				-0.1
1,260,446	-				+1.4
1,260,446	-				-0.6
1,260,446	-				+1.4
1,260,446	-				+0.2
1,260,470	+				+0.0
1,260,470	+				+0.8
1,260,470	+				-0.4
1,260,470	+				+0.9
1,260,470	+				-0.6
1,260,470	+				+2.9
1,260,470	+				+1.4
1,260,471	-				+0.4
1,260,471	-				-0.2
1,260,471	-				-1.0
1,260,471	-				-1.0
1,260,471	-				+0.0
1,260,471	-				+0.4
1,260,471	-				+0.9
1,260,471	-				+1.4
1,260,471	-				+2.7
1,260,471	-				-0.7
1,260,471	-				-1.0
1,260,471	-				-1.0
1,260,471	-				-1.2
1,260,471	-				-1.4
1,260,474	+				+1.9
1,260,474	+				-0.2
1,260,474	+				+0.1
1,260,474	+				+0.4
1,260,475	-				+0.8
1,260,475	-				-0.2
1,260,475	-				+0.4
1,260,475	-				-1.2
1,260,475	-				+0.9
1,260,498	-		PFLU_RS05590	0.11	-1.4
1,260,498	-		PFLU_RS05590	0.11	+1.4
1,260,608	+		PFLU_RS05590	0.19	-0.6
1,260,608	+		PFLU_RS05590	0.19	-0.6
1,260,608	+		PFLU_RS05590	0.19	+1.9
1,260,800	-		PFLU_RS05590	0.33	+0.1
1,260,929	+		PFLU_RS05590	0.42	-0.5
1,260,929	+		PFLU_RS05590	0.42	+0.1
1,260,930	-		PFLU_RS05590	0.42	+1.8
1,260,930	-		PFLU_RS05590	0.42	+0.9
1,260,930	-		PFLU_RS05590	0.42	+0.8
1,260,977	+		PFLU_RS05590	0.46	-0.2
1,260,977	+		PFLU_RS05590	0.46	+0.8
1,260,977	+		PFLU_RS05590	0.46	-1.2
1,260,977	+		PFLU_RS05590	0.46	+0.4
1,260,977	+		PFLU_RS05590	0.46	-0.6
1,260,977	+		PFLU_RS05590	0.46	-1.2
1,260,977	+		PFLU_RS05590	0.46	+0.8
1,260,977	+		PFLU_RS05590	0.46	+1.6
1,261,017	-		PFLU_RS05590	0.48	-1.2
1,261,017	-		PFLU_RS05590	0.48	+2.7
1,261,028	+		PFLU_RS05590	0.49	-0.2
1,261,059	-		PFLU_RS05590	0.51	+1.0
1,261,154	+		PFLU_RS05590	0.58	-1.2