Experiment: D-Trehalose 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03920 and PFLU_RS03925 are separated by 75 nucleotides PFLU_RS03925 and PFLU_RS03930 overlap by 4 nucleotides PFLU_RS03930 and PFLU_RS03935 overlap by 4 nucleotides PFLU_RS03935 and PFLU_RS03940 overlap by 4 nucleotides
PFLU_RS03920: PFLU_RS03920 - membrane protein, at 888,228 to 888,917
_RS03920
PFLU_RS03925: PFLU_RS03925 - hypothetical protein, at 888,993 to 889,208
_RS03925
PFLU_RS03930: PFLU_RS03930 - DNA gyrase inhibitor YacG, at 889,205 to 889,405
_RS03930
PFLU_RS03935: PFLU_RS03935 - dephospho-CoA kinase, at 889,402 to 890,025
_RS03935
PFLU_RS03940: PFLU_RS03940 - prepilin peptidase, at 890,022 to 890,888
_RS03940
Position (kb) 889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.221 kb on + strand at 888.221 kb on + strand at 888.221 kb on + strand at 888.221 kb on + strand at 888.222 kb on - strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.417 kb on - strand, within PFLU_RS03920 at 888.429 kb on + strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.876 kb on + strand at 888.876 kb on + strand at 888.876 kb on + strand at 888.877 kb on - strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.188 kb on + strand at 889.188 kb on + strand at 889.188 kb on + strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.197 kb on - strand at 889.197 kb on - strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.207 kb on - strand at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.058 kb on + strand at 890.059 kb on - strand at 890.104 kb on + strand at 890.104 kb on + strand at 890.105 kb on - strand at 890.105 kb on - strand at 890.191 kb on - strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.327 kb on - strand, within PFLU_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C) remove 888,221 + -0.3 888,221 + -0.3 888,221 + -0.2 888,221 + -0.9 888,222 - +2.5 888,282 + +0.9 888,282 + -0.1 888,282 + +0.9 888,282 + +0.4 888,282 + -0.5 888,282 + -2.0 888,282 + +0.2 888,282 + +2.2 888,282 + -0.9 888,282 + +0.4 888,282 + -0.4 888,282 + -0.3 888,282 + +0.2 888,282 + -0.2 888,282 + +0.1 888,282 + +0.1 888,282 + +0.1 888,283 - +0.4 888,283 - -0.3 888,283 - +0.1 888,283 - -0.4 888,283 - -1.1 888,283 - +0.1 888,283 - +0.5 888,283 - -0.5 888,283 - -0.1 888,283 - +0.7 888,283 - -1.2 888,417 - PFLU_RS03920 0.27 +0.3 888,429 + PFLU_RS03920 0.29 -0.1 888,430 - PFLU_RS03920 0.29 -1.1 888,430 - PFLU_RS03920 0.29 +1.5 888,430 - PFLU_RS03920 0.29 -0.7 888,645 + PFLU_RS03920 0.60 -0.2 888,645 + PFLU_RS03920 0.60 -0.8 888,645 + PFLU_RS03920 0.60 +0.5 888,645 + PFLU_RS03920 0.60 +0.7 888,645 + PFLU_RS03920 0.60 -0.3 888,645 + PFLU_RS03920 0.60 -1.6 888,645 + PFLU_RS03920 0.60 -0.1 888,645 + PFLU_RS03920 0.60 +0.9 888,645 + PFLU_RS03920 0.60 +1.1 888,645 + PFLU_RS03920 0.60 -1.7 888,645 + PFLU_RS03920 0.60 -1.3 888,645 + PFLU_RS03920 0.60 -0.1 888,645 + PFLU_RS03920 0.60 +0.1 888,645 + PFLU_RS03920 0.60 -0.4 888,645 + PFLU_RS03920 0.60 -0.3 888,645 + PFLU_RS03920 0.60 -0.1 888,645 + PFLU_RS03920 0.60 +0.2 888,645 + PFLU_RS03920 0.60 +1.5 888,645 + PFLU_RS03920 0.60 +0.2 888,645 + PFLU_RS03920 0.60 -0.3 888,645 + PFLU_RS03920 0.60 +1.3 888,645 + PFLU_RS03920 0.60 -0.2 888,645 + PFLU_RS03920 0.60 -0.2 888,645 + PFLU_RS03920 0.60 +0.2 888,645 + PFLU_RS03920 0.60 -1.1 888,645 + PFLU_RS03920 0.60 +0.8 888,645 + PFLU_RS03920 0.60 +0.3 888,645 + PFLU_RS03920 0.60 +1.1 888,645 + PFLU_RS03920 0.60 +0.3 888,645 + PFLU_RS03920 0.60 -0.7 888,645 + PFLU_RS03920 0.60 +0.2 888,645 + PFLU_RS03920 0.60 -0.3 888,646 - PFLU_RS03920 0.61 -0.4 888,646 - PFLU_RS03920 0.61 +1.3 888,646 - PFLU_RS03920 0.61 -0.1 888,646 - PFLU_RS03920 0.61 -1.3 888,646 - PFLU_RS03920 0.61 -0.4 888,646 - PFLU_RS03920 0.61 +0.1 888,646 - PFLU_RS03920 0.61 +0.3 888,646 - PFLU_RS03920 0.61 -0.2 888,646 - PFLU_RS03920 0.61 +1.2 888,646 - PFLU_RS03920 0.61 -0.5 888,646 - PFLU_RS03920 0.61 +0.4 888,646 - PFLU_RS03920 0.61 -0.4 888,646 - PFLU_RS03920 0.61 -0.1 888,646 - PFLU_RS03920 0.61 -0.8 888,646 - PFLU_RS03920 0.61 -0.8 888,646 - PFLU_RS03920 0.61 +0.0 888,646 - PFLU_RS03920 0.61 -0.5 888,646 - PFLU_RS03920 0.61 -0.3 888,646 - PFLU_RS03920 0.61 +0.5 888,646 - PFLU_RS03920 0.61 +0.2 888,646 - PFLU_RS03920 0.61 +0.2 888,646 - PFLU_RS03920 0.61 -0.8 888,646 - PFLU_RS03920 0.61 +0.0 888,646 - PFLU_RS03920 0.61 -0.3 888,646 - PFLU_RS03920 0.61 -0.8 888,646 - PFLU_RS03920 0.61 -0.1 888,646 - PFLU_RS03920 0.61 +0.5 888,647 + PFLU_RS03920 0.61 +0.1 888,647 + PFLU_RS03920 0.61 +0.7 888,647 + PFLU_RS03920 0.61 -1.4 888,647 + PFLU_RS03920 0.61 +0.3 888,647 + PFLU_RS03920 0.61 -0.4 888,647 + PFLU_RS03920 0.61 -0.8 888,647 + PFLU_RS03920 0.61 -1.6 888,647 + PFLU_RS03920 0.61 -0.3 888,647 + PFLU_RS03920 0.61 +0.4 888,647 + PFLU_RS03920 0.61 -0.2 888,647 + PFLU_RS03920 0.61 +0.2 888,647 + PFLU_RS03920 0.61 +0.3 888,648 - PFLU_RS03920 0.61 +0.5 888,648 - PFLU_RS03920 0.61 +0.0 888,648 - PFLU_RS03920 0.61 -0.1 888,648 - PFLU_RS03920 0.61 -0.8 888,648 - PFLU_RS03920 0.61 -1.3 888,648 - PFLU_RS03920 0.61 -1.8 888,648 - PFLU_RS03920 0.61 -0.8 888,648 - PFLU_RS03920 0.61 -0.4 888,648 - PFLU_RS03920 0.61 -0.1 888,648 - PFLU_RS03920 0.61 +1.2 888,648 - PFLU_RS03920 0.61 -1.0 888,648 - PFLU_RS03920 0.61 -0.3 888,700 + PFLU_RS03920 0.68 -0.8 888,700 + PFLU_RS03920 0.68 +0.8 888,700 + PFLU_RS03920 0.68 +0.5 888,700 + PFLU_RS03920 0.68 -1.3 888,700 + PFLU_RS03920 0.68 -2.4 888,700 + PFLU_RS03920 0.68 +0.5 888,701 - PFLU_RS03920 0.69 -1.0 888,701 - PFLU_RS03920 0.69 +1.0 888,701 - PFLU_RS03920 0.69 -0.1 888,703 + PFLU_RS03920 0.69 -0.1 888,703 + PFLU_RS03920 0.69 +0.8 888,703 + PFLU_RS03920 0.69 +1.1 888,704 - PFLU_RS03920 0.69 +0.6 888,704 - PFLU_RS03920 0.69 +1.6 888,704 - PFLU_RS03920 0.69 -0.5 888,704 - PFLU_RS03920 0.69 +0.6 888,704 - PFLU_RS03920 0.69 +0.2 888,876 + +0.2 888,876 + -1.8 888,876 + +0.4 888,877 - -2.0 889,002 + +0.2 889,002 + -0.8 889,002 + -1.2 889,002 + -0.5 889,002 + -0.1 889,002 + -0.3 889,002 + -2.1 889,002 + +1.0 889,002 + -0.0 889,003 - -0.0 889,003 - +0.5 889,003 - -0.3 889,003 - -0.2 889,003 - -2.3 889,155 + PFLU_RS03925 0.75 +1.6 889,155 + PFLU_RS03925 0.75 -0.2 889,155 + PFLU_RS03925 0.75 +0.5 889,155 + PFLU_RS03925 0.75 +1.6 889,155 + PFLU_RS03925 0.75 -0.8 889,156 - PFLU_RS03925 0.75 -0.4 889,156 - PFLU_RS03925 0.75 +0.6 889,156 - PFLU_RS03925 0.75 -0.5 889,156 - PFLU_RS03925 0.75 -0.3 889,156 - PFLU_RS03925 0.75 -2.3 889,156 - PFLU_RS03925 0.75 -0.5 889,156 - PFLU_RS03925 0.75 +0.7 889,156 - PFLU_RS03925 0.75 +1.3 889,156 - PFLU_RS03925 0.75 -1.3 889,156 - PFLU_RS03925 0.75 +1.1 889,188 + +0.3 889,188 + -0.7 889,188 + +0.1 889,189 - -0.7 889,189 - +0.9 889,189 - -0.4 889,189 - -1.3 889,189 - -0.4 889,189 - -0.1 889,196 + -1.1 889,196 + -0.1 889,196 + +0.7 889,197 - -0.7 889,197 - -0.8 889,206 + -0.0 889,206 + +1.2 889,207 - +0.5 889,270 + PFLU_RS03930 0.32 -1.1 889,270 + PFLU_RS03930 0.32 +1.4 889,270 + PFLU_RS03930 0.32 +1.7 889,270 + PFLU_RS03930 0.32 +0.2 889,270 + PFLU_RS03930 0.32 +0.8 889,270 + PFLU_RS03930 0.32 +1.0 889,271 - PFLU_RS03930 0.33 -1.5 889,271 - PFLU_RS03930 0.33 -0.2 889,271 - PFLU_RS03930 0.33 -1.3 889,271 - PFLU_RS03930 0.33 +1.3 889,271 - PFLU_RS03930 0.33 +1.3 889,271 - PFLU_RS03930 0.33 +0.6 889,271 - PFLU_RS03930 0.33 -0.6 889,271 - PFLU_RS03930 0.33 +0.7 889,425 + -0.1 889,425 + -0.7 889,425 + -0.1 889,425 + +0.9 889,425 + +0.2 889,425 + -0.5 889,426 - +0.7 889,426 - -0.5 889,426 - -0.2 889,426 - -1.9 889,426 - +0.5 889,426 - +0.9 890,047 + +0.2 890,047 + -0.8 890,047 + +1.0 890,047 + +0.5 890,047 + -0.1 890,048 - +0.5 890,048 - +0.1 890,048 - -1.4 890,048 - -0.2 890,058 + +1.6 890,059 - -1.7 890,104 + +1.2 890,104 + -0.2 890,105 - -2.0 890,105 - -0.1 890,191 - PFLU_RS03940 0.19 -2.4 890,307 + PFLU_RS03940 0.33 -0.8 890,307 + PFLU_RS03940 0.33 -0.0 890,307 + PFLU_RS03940 0.33 +0.5 890,308 - PFLU_RS03940 0.33 +0.9 890,308 - PFLU_RS03940 0.33 +0.9 890,326 + PFLU_RS03940 0.35 -0.6 890,326 + PFLU_RS03940 0.35 +0.8 890,326 + PFLU_RS03940 0.35 +0.9 890,326 + PFLU_RS03940 0.35 -0.5 890,326 + PFLU_RS03940 0.35 +1.0 890,327 - PFLU_RS03940 0.35 -0.1
Or see this region's nucleotide sequence