Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02510

Experiment: D-Trehalose 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02505 and PFLU_RS02510 are separated by 166 nucleotidesPFLU_RS02510 and PFLU_RS02515 are separated by 3 nucleotides PFLU_RS02505: PFLU_RS02505 - HDOD domain-containing protein, at 576,256 to 577,791 _RS02505 PFLU_RS02510: PFLU_RS02510 - flagellar motor stator protein MotA, at 577,958 to 578,809 _RS02510 PFLU_RS02515: PFLU_RS02515 - flagellar motor protein MotB, at 578,813 to 579,832 _RS02515 Position (kb) 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 577.020 kb on + strand, within PFLU_RS02505at 577.154 kb on + strand, within PFLU_RS02505at 577.154 kb on + strand, within PFLU_RS02505at 577.154 kb on + strand, within PFLU_RS02505at 577.155 kb on - strand, within PFLU_RS02505at 577.155 kb on - strand, within PFLU_RS02505at 577.231 kb on + strand, within PFLU_RS02505at 577.231 kb on + strand, within PFLU_RS02505at 577.232 kb on - strand, within PFLU_RS02505at 577.308 kb on - strand, within PFLU_RS02505at 577.351 kb on - strand, within PFLU_RS02505at 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.755 kb on + strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.756 kb on - strandat 577.761 kb on + strandat 577.761 kb on + strandat 577.761 kb on + strandat 577.762 kb on - strandat 577.762 kb on - strandat 577.762 kb on - strandat 577.762 kb on - strandat 577.864 kb on + strandat 577.864 kb on + strandat 577.864 kb on + strandat 577.864 kb on + strandat 577.864 kb on + strandat 577.864 kb on + strandat 577.865 kb on - strandat 577.865 kb on - strandat 577.865 kb on - strandat 577.865 kb on - strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.866 kb on + strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.867 kb on - strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.920 kb on + strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.921 kb on - strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.946 kb on + strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.947 kb on - strandat 577.957 kb on + strandat 577.957 kb on + strandat 577.957 kb on + strandat 577.957 kb on + strandat 577.958 kb on - strandat 577.958 kb on - strandat 577.958 kb on - strandat 577.958 kb on - strandat 577.958 kb on - strandat 577.963 kb on + strandat 577.963 kb on + strandat 577.964 kb on - strandat 577.964 kb on - strandat 577.964 kb on - strandat 578.009 kb on + strandat 578.009 kb on + strandat 578.009 kb on + strandat 578.009 kb on + strandat 578.010 kb on - strandat 578.010 kb on - strandat 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.111 kb on + strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.112 kb on - strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.177 kb on + strand, within PFLU_RS02510at 578.178 kb on - strand, within PFLU_RS02510at 578.178 kb on - strand, within PFLU_RS02510at 578.178 kb on - strand, within PFLU_RS02510at 578.201 kb on + strand, within PFLU_RS02510at 578.201 kb on + strand, within PFLU_RS02510at 578.201 kb on + strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.202 kb on - strand, within PFLU_RS02510at 578.291 kb on + strand, within PFLU_RS02510at 578.291 kb on + strand, within PFLU_RS02510at 578.292 kb on - strand, within PFLU_RS02510at 578.292 kb on - strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.327 kb on + strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.328 kb on - strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.329 kb on + strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.330 kb on - strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.339 kb on + strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.340 kb on - strand, within PFLU_RS02510at 578.417 kb on - strand, within PFLU_RS02510at 578.467 kb on + strand, within PFLU_RS02510at 578.467 kb on + strand, within PFLU_RS02510at 578.467 kb on + strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.468 kb on - strand, within PFLU_RS02510at 578.554 kb on + strand, within PFLU_RS02510at 578.555 kb on - strand, within PFLU_RS02510at 578.555 kb on - strand, within PFLU_RS02510at 578.581 kb on + strand, within PFLU_RS02510at 578.606 kb on + strand, within PFLU_RS02510at 578.670 kb on - strand, within PFLU_RS02510at 578.670 kb on - strand, within PFLU_RS02510at 578.743 kb on + strandat 578.743 kb on + strandat 578.743 kb on + strandat 578.987 kb on + strand, within PFLU_RS02515at 578.987 kb on + strand, within PFLU_RS02515at 578.987 kb on + strand, within PFLU_RS02515at 578.987 kb on + strand, within PFLU_RS02515at 578.988 kb on - strand, within PFLU_RS02515at 578.988 kb on - strand, within PFLU_RS02515at 579.076 kb on + strand, within PFLU_RS02515at 579.076 kb on + strand, within PFLU_RS02515at 579.077 kb on - strand, within PFLU_RS02515at 579.077 kb on - strand, within PFLU_RS02515at 579.077 kb on - strand, within PFLU_RS02515at 579.342 kb on - strand, within PFLU_RS02515at 579.432 kb on - strand, within PFLU_RS02515at 579.432 kb on - strand, within PFLU_RS02515at 579.432 kb on - strand, within PFLU_RS02515at 579.515 kb on + strand, within PFLU_RS02515at 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.808 kb on + strandat 579.809 kb on - strandat 579.809 kb on - strandat 579.809 kb on - strandat 579.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 5 mM (C)
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577,020 + PFLU_RS02505 0.50 +0.1
577,154 + PFLU_RS02505 0.58 -0.0
577,154 + PFLU_RS02505 0.58 +0.5
577,154 + PFLU_RS02505 0.58 -0.6
577,155 - PFLU_RS02505 0.59 -0.6
577,155 - PFLU_RS02505 0.59 -2.1
577,231 + PFLU_RS02505 0.63 +0.5
577,231 + PFLU_RS02505 0.63 +0.7
577,232 - PFLU_RS02505 0.64 -0.8
577,308 - PFLU_RS02505 0.68 -0.7
577,351 - PFLU_RS02505 0.71 +0.7
577,755 + +0.1
577,755 + +0.4
577,755 + +0.3
577,755 + +0.5
577,755 + -0.6
577,755 + +1.2
577,755 + +0.7
577,755 + -0.5
577,755 + +0.7
577,756 - -0.6
577,756 - +0.5
577,756 - +1.0
577,756 - -1.1
577,756 - +0.5
577,756 - -0.4
577,756 - -1.5
577,756 - -0.0
577,756 - -0.5
577,761 + +0.5
577,761 + +0.5
577,761 + -1.0
577,762 - -0.0
577,762 - +0.0
577,762 - +0.7
577,762 - +0.0
577,864 + -1.2
577,864 + +0.6
577,864 + -0.4
577,864 + +0.0
577,864 + -0.1
577,864 + -1.5
577,865 - -0.0
577,865 - +0.1
577,865 - -0.2
577,865 - +1.0
577,866 + +0.0
577,866 + -0.6
577,866 + +0.8
577,866 + +0.4
577,866 + +0.8
577,866 + -1.3
577,866 + +0.9
577,867 - +0.4
577,867 - +0.5
577,867 - +0.6
577,867 - +0.4
577,920 + -1.3
577,920 + -0.3
577,920 + +0.1
577,920 + +0.2
577,920 + -0.9
577,920 + -0.9
577,920 + +0.2
577,920 + +1.4
577,920 + -1.3
577,920 + -0.2
577,920 + -0.2
577,920 + -0.9
577,920 + +0.7
577,921 - +0.9
577,921 - +1.0
577,921 - -1.5
577,921 - +0.7
577,921 - +2.3
577,921 - +1.3
577,921 - +1.1
577,921 - +0.2
577,946 + +0.3
577,946 + +0.1
577,946 + -0.5
577,946 + +1.1
577,946 + +1.9
577,946 + +3.1
577,946 + -0.5
577,946 + -0.0
577,946 + -3.0
577,946 + +0.8
577,947 - +1.5
577,947 - +1.9
577,947 - +0.4
577,947 - -0.5
577,947 - +0.4
577,947 - +1.5
577,947 - +0.2
577,947 - +0.2
577,947 - -0.5
577,947 - +0.6
577,947 - +0.2
577,947 - -0.3
577,947 - +1.0
577,957 + +1.4
577,957 + +1.1
577,957 + +0.4
577,957 + +1.0
577,958 - +0.4
577,958 - +1.4
577,958 - +0.1
577,958 - +0.5
577,958 - +0.9
577,963 + -0.2
577,963 + +1.9
577,964 - +1.2
577,964 - +0.8
577,964 - +1.5
578,009 + +1.4
578,009 + +1.0
578,009 + +1.9
578,009 + +0.6
578,010 - +1.4
578,010 - +1.5
578,111 + PFLU_RS02510 0.18 +0.2
578,111 + PFLU_RS02510 0.18 +0.4
578,111 + PFLU_RS02510 0.18 +0.8
578,111 + PFLU_RS02510 0.18 +0.5
578,112 - PFLU_RS02510 0.18 +1.5
578,112 - PFLU_RS02510 0.18 +1.3
578,112 - PFLU_RS02510 0.18 +0.5
578,112 - PFLU_RS02510 0.18 +0.5
578,177 + PFLU_RS02510 0.26 +0.9
578,177 + PFLU_RS02510 0.26 -0.0
578,177 + PFLU_RS02510 0.26 +0.5
578,178 - PFLU_RS02510 0.26 +1.3
578,178 - PFLU_RS02510 0.26 +2.2
578,178 - PFLU_RS02510 0.26 +0.6
578,201 + PFLU_RS02510 0.29 -0.1
578,201 + PFLU_RS02510 0.29 -0.7
578,201 + PFLU_RS02510 0.29 +3.3
578,202 - PFLU_RS02510 0.29 +0.4
578,202 - PFLU_RS02510 0.29 -0.2
578,202 - PFLU_RS02510 0.29 +0.5
578,202 - PFLU_RS02510 0.29 +1.1
578,202 - PFLU_RS02510 0.29 +0.1
578,291 + PFLU_RS02510 0.39 +0.5
578,291 + PFLU_RS02510 0.39 +1.5
578,292 - PFLU_RS02510 0.39 +2.3
578,292 - PFLU_RS02510 0.39 +0.8
578,327 + PFLU_RS02510 0.43 +1.0
578,327 + PFLU_RS02510 0.43 -0.9
578,327 + PFLU_RS02510 0.43 +0.6
578,327 + PFLU_RS02510 0.43 +1.0
578,327 + PFLU_RS02510 0.43 +0.7
578,327 + PFLU_RS02510 0.43 +0.8
578,327 + PFLU_RS02510 0.43 -0.5
578,327 + PFLU_RS02510 0.43 -0.2
578,327 + PFLU_RS02510 0.43 -0.5
578,327 + PFLU_RS02510 0.43 +0.3
578,327 + PFLU_RS02510 0.43 +1.9
578,327 + PFLU_RS02510 0.43 +0.6
578,327 + PFLU_RS02510 0.43 -0.1
578,327 + PFLU_RS02510 0.43 +2.2
578,327 + PFLU_RS02510 0.43 +0.9
578,328 - PFLU_RS02510 0.43 +2.1
578,328 - PFLU_RS02510 0.43 +1.2
578,328 - PFLU_RS02510 0.43 -0.8
578,328 - PFLU_RS02510 0.43 +1.1
578,328 - PFLU_RS02510 0.43 +0.8
578,328 - PFLU_RS02510 0.43 +0.2
578,328 - PFLU_RS02510 0.43 -0.1
578,328 - PFLU_RS02510 0.43 +1.2
578,328 - PFLU_RS02510 0.43 +1.2
578,328 - PFLU_RS02510 0.43 +1.3
578,328 - PFLU_RS02510 0.43 +2.1
578,328 - PFLU_RS02510 0.43 +1.2
578,328 - PFLU_RS02510 0.43 +0.7
578,328 - PFLU_RS02510 0.43 -0.0
578,328 - PFLU_RS02510 0.43 -0.0
578,328 - PFLU_RS02510 0.43 +0.4
578,328 - PFLU_RS02510 0.43 +0.8
578,328 - PFLU_RS02510 0.43 +0.9
578,328 - PFLU_RS02510 0.43 +0.6
578,328 - PFLU_RS02510 0.43 +0.9
578,328 - PFLU_RS02510 0.43 -0.3
578,328 - PFLU_RS02510 0.43 +1.3
578,328 - PFLU_RS02510 0.43 +1.2
578,328 - PFLU_RS02510 0.43 -0.3
578,329 + PFLU_RS02510 0.44 +2.3
578,329 + PFLU_RS02510 0.44 +1.1
578,329 + PFLU_RS02510 0.44 +0.8
578,329 + PFLU_RS02510 0.44 +0.2
578,329 + PFLU_RS02510 0.44 +0.3
578,329 + PFLU_RS02510 0.44 +0.3
578,329 + PFLU_RS02510 0.44 +0.8
578,329 + PFLU_RS02510 0.44 +0.7
578,329 + PFLU_RS02510 0.44 +0.5
578,329 + PFLU_RS02510 0.44 +0.7
578,329 + PFLU_RS02510 0.44 +2.7
578,330 - PFLU_RS02510 0.44 +1.1
578,330 - PFLU_RS02510 0.44 -0.2
578,330 - PFLU_RS02510 0.44 +0.7
578,330 - PFLU_RS02510 0.44 +1.3
578,330 - PFLU_RS02510 0.44 +0.8
578,330 - PFLU_RS02510 0.44 +0.5
578,330 - PFLU_RS02510 0.44 -0.6
578,330 - PFLU_RS02510 0.44 +0.4
578,330 - PFLU_RS02510 0.44 -0.4
578,330 - PFLU_RS02510 0.44 +0.1
578,330 - PFLU_RS02510 0.44 -0.5
578,330 - PFLU_RS02510 0.44 +0.2
578,330 - PFLU_RS02510 0.44 +0.4
578,330 - PFLU_RS02510 0.44 +0.4
578,330 - PFLU_RS02510 0.44 -0.2
578,339 + PFLU_RS02510 0.45 +0.3
578,339 + PFLU_RS02510 0.45 -0.2
578,339 + PFLU_RS02510 0.45 +2.4
578,339 + PFLU_RS02510 0.45 +1.0
578,339 + PFLU_RS02510 0.45 +0.8
578,339 + PFLU_RS02510 0.45 +0.8
578,339 + PFLU_RS02510 0.45 -0.6
578,340 - PFLU_RS02510 0.45 +1.2
578,340 - PFLU_RS02510 0.45 +0.5
578,340 - PFLU_RS02510 0.45 +0.1
578,340 - PFLU_RS02510 0.45 +0.2
578,340 - PFLU_RS02510 0.45 +0.0
578,340 - PFLU_RS02510 0.45 +0.4
578,340 - PFLU_RS02510 0.45 +1.2
578,340 - PFLU_RS02510 0.45 -1.8
578,340 - PFLU_RS02510 0.45 -0.0
578,417 - PFLU_RS02510 0.54 +0.9
578,467 + PFLU_RS02510 0.60 +0.5
578,467 + PFLU_RS02510 0.60 +0.4
578,467 + PFLU_RS02510 0.60 +1.2
578,468 - PFLU_RS02510 0.60 +0.5
578,468 - PFLU_RS02510 0.60 +1.1
578,468 - PFLU_RS02510 0.60 -2.0
578,554 + PFLU_RS02510 0.70 -0.8
578,555 - PFLU_RS02510 0.70 +0.1
578,555 - PFLU_RS02510 0.70 +1.5
578,581 + PFLU_RS02510 0.73 +1.0
578,606 + PFLU_RS02510 0.76 -0.5
578,670 - PFLU_RS02510 0.84 +1.5
578,670 - PFLU_RS02510 0.84 +0.3
578,743 + +0.2
578,743 + +0.4
578,743 + +1.4
578,987 + PFLU_RS02515 0.17 +0.8
578,987 + PFLU_RS02515 0.17 +0.7
578,987 + PFLU_RS02515 0.17 +0.5
578,987 + PFLU_RS02515 0.17 +1.2
578,988 - PFLU_RS02515 0.17 +2.5
578,988 - PFLU_RS02515 0.17 +0.5
579,076 + PFLU_RS02515 0.26 +0.3
579,076 + PFLU_RS02515 0.26 -1.3
579,077 - PFLU_RS02515 0.26 +1.4
579,077 - PFLU_RS02515 0.26 -0.2
579,077 - PFLU_RS02515 0.26 +1.0
579,342 - PFLU_RS02515 0.52 +1.0
579,432 - PFLU_RS02515 0.61 +0.5
579,432 - PFLU_RS02515 0.61 -0.2
579,432 - PFLU_RS02515 0.61 -0.8
579,515 + PFLU_RS02515 0.69 +0.7
579,808 + -0.3
579,808 + -0.7
579,808 + +0.1
579,808 + -1.0
579,808 + -1.6
579,808 + +0.3
579,808 + +0.3
579,808 + -1.3
579,809 - +0.1
579,809 - +0.5
579,809 - -0.6
579,809 - -0.6

Or see this region's nucleotide sequence